Wall clock time and date at job start Mon Mar 30 2020 19:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46504 * 120.00068 * 2 1 4 4 C 1.53001 * 109.47009 * 270.00002 * 3 2 1 5 5 N 1.46501 * 109.46632 * 180.02562 * 4 3 2 6 6 C 1.36937 * 119.99562 * 179.97438 * 5 4 3 7 7 H 1.08001 * 120.00247 * 0.02562 * 6 5 4 8 8 C 1.38810 * 120.00145 * 179.97438 * 6 5 4 9 9 N 1.31621 * 119.99916 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00147 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47153 * 90.00557 * 10 8 6 12 12 H 1.48504 * 109.47091 * 210.00492 * 10 8 6 13 13 H 1.48503 * 109.47262 * 330.00490 * 10 8 6 14 14 C 1.34783 * 120.00251 * 179.97438 * 2 1 3 15 15 O 1.21505 * 120.00542 * 184.79174 * 14 2 1 16 16 C 1.48156 * 119.99378 * 4.79178 * 14 2 1 17 17 C 1.39899 * 121.11746 * 142.65707 * 16 14 2 18 18 N 1.31767 * 119.78379 * 180.27802 * 17 16 14 19 19 N 1.28276 * 122.41770 * 359.75103 * 18 17 16 20 20 C 1.32272 * 122.43999 * 359.97438 * 19 18 17 21 21 O 1.35703 * 120.08653 * 180.02562 * 20 19 18 22 22 C 1.39242 * 119.83712 * 359.97438 * 20 19 18 23 23 H 1.08998 * 109.46970 * 264.70793 * 1 2 3 24 24 H 1.09001 * 109.46750 * 24.70665 * 1 2 3 25 25 H 1.08996 * 109.47091 * 144.71120 * 1 2 3 26 26 H 1.08993 * 109.46954 * 30.00507 * 3 2 1 27 27 H 1.09002 * 109.46676 * 150.00028 * 3 2 1 28 28 H 1.09003 * 109.47005 * 299.99811 * 4 3 2 29 29 H 1.08998 * 109.46901 * 59.99912 * 4 3 2 30 30 H 0.96998 * 120.00397 * 359.97438 * 5 4 3 31 31 H 0.96994 * 119.99794 * 179.97438 * 9 8 6 32 32 H 1.07996 * 120.10988 * 0.05409 * 17 16 14 33 33 H 0.96696 * 113.99822 * 269.97588 * 21 20 19 34 34 H 1.07997 * 121.11650 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 -1.4425 5 7 3.1856 2.9788 -1.4424 6 6 3.5285 3.5714 -2.6283 7 1 3.2582 3.1040 -3.5637 8 6 4.2226 4.7735 -2.6284 9 7 4.5516 5.3435 -1.4885 10 14 4.6897 5.5823 -4.2461 11 1 3.6011 6.4968 -4.6748 12 1 5.9448 6.3559 -4.0685 13 1 4.8946 4.5372 -5.2810 14 6 2.1389 -1.1672 0.0005 15 8 3.3508 -1.1691 0.0884 16 6 1.4020 -2.4480 -0.1061 17 6 1.9180 -3.5200 -0.8421 18 7 1.2378 -4.6455 -0.9239 19 7 0.1047 -4.8079 -0.3449 20 6 -0.4652 -3.8580 0.3780 21 8 -1.6655 -4.0817 0.9704 22 6 0.1699 -2.6283 0.5305 23 1 -0.3633 -0.0948 1.0233 24 1 -0.3633 0.9336 -0.4295 25 1 -0.3633 -0.8388 -0.5937 26 1 1.6085 2.0283 0.5139 27 1 3.1499 1.1383 0.5139 28 1 3.0416 0.9507 -1.9563 29 1 1.5001 1.8407 -1.9563 30 1 3.4280 3.3989 -0.6024 31 1 5.0369 6.1833 -1.4886 32 1 2.8692 -3.4242 -1.3446 33 1 -2.4253 -3.8447 0.4213 34 1 -0.2769 -1.8382 1.1157 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663995563.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:21:20 Heat of formation + Delta-G solvation = 17.351451 kcal Electronic energy + Delta-G solvation = -19458.342542 eV Core-core repulsion = 16200.736502 eV Total energy + Delta-G solvation = -3257.606040 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.78044 -39.86283 -38.04124 -36.25638 -34.77320 -33.61775 -31.83252 -31.36020 -28.50396 -27.29969 -25.43328 -24.93643 -23.59106 -21.78593 -20.42832 -19.17936 -18.13888 -17.29457 -17.25296 -17.18687 -16.42212 -15.78193 -15.53279 -14.60700 -14.41597 -14.15506 -13.99535 -13.59451 -13.36726 -13.20800 -12.91449 -12.70057 -12.42335 -11.75420 -11.47528 -11.12338 -10.96774 -10.77773 -10.71745 -10.53027 -10.17754 -10.15268 -9.83500 -9.71626 -8.93898 -8.82550 -7.00966 -5.81930 -3.12043 -0.05768 0.30988 2.28902 2.60088 2.94063 3.08207 3.40817 3.46256 3.48201 3.73665 3.91692 4.03236 4.27514 4.56118 4.65900 4.75693 4.95210 5.00660 5.29161 5.32525 5.40400 5.53082 5.57638 5.64510 5.86874 5.94460 6.32016 6.57087 6.72470 6.79998 7.10596 7.64689 7.82232 8.18478 8.36110 9.47425 10.01712 10.36666 11.40803 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.038757 B = 0.003516 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.271337 B = 7962.811605 C = 8165.717041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.598 5.598 3 C 0.105 3.895 4 C 0.142 3.858 5 N -0.730 5.730 6 C -0.242 4.242 7 H 0.070 0.930 8 C -0.012 4.012 9 N -0.932 5.932 10 Si 0.909 3.091 11 H -0.289 1.289 12 H -0.290 1.290 13 H -0.281 1.281 14 C 0.557 3.443 15 O -0.508 6.508 16 C -0.101 4.101 17 C 0.082 3.918 18 N -0.213 5.213 19 N -0.248 5.248 20 C 0.255 3.745 21 O -0.471 6.471 22 C -0.112 4.112 23 H 0.063 0.937 24 H 0.086 0.914 25 H 0.069 0.931 26 H 0.084 0.916 27 H 0.091 0.909 28 H 0.023 0.977 29 H 0.019 0.981 30 H 0.385 0.615 31 H 0.256 0.744 32 H 0.189 0.811 33 H 0.407 0.593 34 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.066 -15.167 5.102 21.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.331 5.331 3 C -0.016 4.016 4 C 0.014 3.986 5 N -0.375 5.375 6 C -0.373 4.373 7 H 0.088 0.912 8 C -0.208 4.208 9 N -0.581 5.581 10 Si 0.740 3.260 11 H -0.217 1.217 12 H -0.217 1.217 13 H -0.207 1.207 14 C 0.342 3.658 15 O -0.383 6.383 16 C -0.116 4.116 17 C -0.083 4.083 18 N -0.056 5.056 19 N -0.100 5.100 20 C 0.069 3.931 21 O -0.277 6.277 22 C -0.142 4.142 23 H 0.081 0.919 24 H 0.105 0.895 25 H 0.087 0.913 26 H 0.102 0.898 27 H 0.109 0.891 28 H 0.041 0.959 29 H 0.037 0.963 30 H 0.218 0.782 31 H 0.066 0.934 32 H 0.206 0.794 33 H 0.266 0.734 34 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -13.224 -16.822 4.906 21.953 hybrid contribution -0.050 2.300 -0.345 2.326 sum -13.274 -14.522 4.561 20.196 Atomic orbital electron populations 1.22218 0.79675 1.04261 1.01432 1.47704 1.07064 1.06179 1.72169 1.21872 0.97776 0.82313 0.99672 1.20908 0.95303 0.89682 0.92742 1.42190 1.67073 1.21519 1.06704 1.19191 1.29740 1.02469 0.85888 0.91153 1.24757 1.01061 0.97989 0.96999 1.69657 1.44830 1.19572 1.24008 0.86157 0.77714 0.79253 0.82862 1.21653 1.21650 1.20685 1.17943 0.87064 0.82860 0.77968 1.90876 1.12803 1.86506 1.48101 1.21326 0.94756 0.96985 0.98494 1.24629 1.00686 0.88377 0.94633 1.73145 0.99820 1.19709 1.12973 1.72774 1.05186 1.27427 1.04629 1.20758 0.89976 0.89539 0.92868 1.84824 1.12771 1.88068 1.42006 1.23226 0.94612 0.98253 0.98155 0.91884 0.89521 0.91292 0.89786 0.89074 0.95916 0.96301 0.78178 0.93393 0.79444 0.73404 0.81339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.51 8.88 59.85 0.53 1.04 16 2 N -0.60 -7.35 2.87 -182.58 -0.52 -7.88 16 3 C 0.11 1.63 5.53 -4.04 -0.02 1.61 16 4 C 0.14 2.81 6.58 -4.04 -0.03 2.78 16 5 N -0.73 -18.34 5.60 -59.91 -0.34 -18.67 16 6 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 7 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 8 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 9 N -0.93 -27.97 13.06 55.49 0.72 -27.24 16 10 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 13 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 14 C 0.56 7.55 7.43 -12.18 -0.09 7.46 16 15 O -0.51 -8.96 16.49 5.36 0.09 -8.88 16 16 C -0.10 -1.09 5.30 -104.60 -0.55 -1.64 16 17 C 0.08 0.91 10.96 -16.96 -0.19 0.73 16 18 N -0.21 -2.61 11.48 30.79 0.35 -2.25 16 19 N -0.25 -2.93 11.50 30.49 0.35 -2.58 16 20 C 0.25 2.32 7.85 -16.99 -0.13 2.18 16 21 O -0.47 -3.18 13.57 -18.81 -0.26 -3.43 16 22 C -0.11 -0.92 7.72 -38.61 -0.30 -1.22 16 23 H 0.06 0.33 6.89 -51.93 -0.36 -0.03 16 24 H 0.09 0.65 8.03 -51.93 -0.42 0.24 16 25 H 0.07 0.43 5.83 -51.93 -0.30 0.13 16 26 H 0.08 1.16 8.07 -51.93 -0.42 0.74 16 27 H 0.09 1.58 7.36 -51.93 -0.38 1.20 16 28 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.38 10.02 7.67 -40.82 -0.31 9.71 16 31 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.19 1.86 8.06 -52.49 -0.42 1.44 16 33 H 0.41 0.53 9.06 45.56 0.41 0.94 16 34 H 0.17 0.94 5.32 -52.49 -0.28 0.66 16 LS Contribution 299.91 15.07 4.52 4.52 Total: -1.00 -35.61 299.91 -4.00 -39.61 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -2.87 Total: 3.95 kcal Atomic # 6 Polarization: 6.62 SS G_CDS: -1.03 Total: 5.59 kcal Atomic # 7 Polarization: -59.19 SS G_CDS: 0.57 Total: -58.62 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: -0.17 Total: -12.31 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -35.61 -4.00 -39.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663995563.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.966 kcal (2) G-P(sol) polarization free energy of solvation -35.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds