Wall clock time and date at job start Mon Mar 30 2020 19:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46504 * 120.00068 * 2 1 4 4 C 1.53001 * 109.47009 * 270.00002 * 3 2 1 5 5 N 1.46501 * 109.46632 * 180.02562 * 4 3 2 6 6 C 1.36937 * 119.99562 * 179.97438 * 5 4 3 7 7 H 1.08001 * 120.00247 * 0.02562 * 6 5 4 8 8 C 1.38810 * 120.00145 * 179.97438 * 6 5 4 9 9 N 1.31621 * 119.99916 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00147 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47153 * 90.00557 * 10 8 6 12 12 H 1.48504 * 109.47091 * 210.00492 * 10 8 6 13 13 H 1.48503 * 109.47262 * 330.00490 * 10 8 6 14 14 C 1.34783 * 120.00251 * 179.97438 * 2 1 3 15 15 O 1.21505 * 120.00542 * 184.79174 * 14 2 1 16 16 C 1.48156 * 119.99378 * 4.79178 * 14 2 1 17 17 C 1.39899 * 121.11746 * 142.65707 * 16 14 2 18 18 N 1.31767 * 119.78379 * 180.27802 * 17 16 14 19 19 N 1.28276 * 122.41770 * 359.75103 * 18 17 16 20 20 C 1.32272 * 122.43999 * 359.97438 * 19 18 17 21 21 O 1.35703 * 120.08653 * 180.02562 * 20 19 18 22 22 C 1.39242 * 119.83712 * 359.97438 * 20 19 18 23 23 H 1.08998 * 109.46970 * 264.70793 * 1 2 3 24 24 H 1.09001 * 109.46750 * 24.70665 * 1 2 3 25 25 H 1.08996 * 109.47091 * 144.71120 * 1 2 3 26 26 H 1.08993 * 109.46954 * 30.00507 * 3 2 1 27 27 H 1.09002 * 109.46676 * 150.00028 * 3 2 1 28 28 H 1.09003 * 109.47005 * 299.99811 * 4 3 2 29 29 H 1.08998 * 109.46901 * 59.99912 * 4 3 2 30 30 H 0.96998 * 120.00397 * 359.97438 * 5 4 3 31 31 H 0.96994 * 119.99794 * 179.97438 * 9 8 6 32 32 H 1.07996 * 120.10988 * 0.05409 * 17 16 14 33 33 H 0.96696 * 113.99822 * 269.97588 * 21 20 19 34 34 H 1.07997 * 121.11650 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 -1.4425 5 7 3.1856 2.9788 -1.4424 6 6 3.5285 3.5714 -2.6283 7 1 3.2582 3.1040 -3.5637 8 6 4.2226 4.7735 -2.6284 9 7 4.5516 5.3435 -1.4885 10 14 4.6897 5.5823 -4.2461 11 1 3.6011 6.4968 -4.6748 12 1 5.9448 6.3559 -4.0685 13 1 4.8946 4.5372 -5.2810 14 6 2.1389 -1.1672 0.0005 15 8 3.3508 -1.1691 0.0884 16 6 1.4020 -2.4480 -0.1061 17 6 1.9180 -3.5200 -0.8421 18 7 1.2378 -4.6455 -0.9239 19 7 0.1047 -4.8079 -0.3449 20 6 -0.4652 -3.8580 0.3780 21 8 -1.6655 -4.0817 0.9704 22 6 0.1699 -2.6283 0.5305 23 1 -0.3633 -0.0948 1.0233 24 1 -0.3633 0.9336 -0.4295 25 1 -0.3633 -0.8388 -0.5937 26 1 1.6085 2.0283 0.5139 27 1 3.1499 1.1383 0.5139 28 1 3.0416 0.9507 -1.9563 29 1 1.5001 1.8407 -1.9563 30 1 3.4280 3.3989 -0.6024 31 1 5.0369 6.1833 -1.4886 32 1 2.8692 -3.4242 -1.3446 33 1 -2.4253 -3.8447 0.4213 34 1 -0.2769 -1.8382 1.1157 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663995563.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:21:19 Heat of formation + Delta-G solvation = -13.915228 kcal Electronic energy + Delta-G solvation = -19459.698367 eV Core-core repulsion = 16200.736502 eV Total energy + Delta-G solvation = -3258.961865 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.59784 -40.88474 -38.65381 -37.53619 -36.32805 -34.71168 -33.23299 -32.55385 -29.98438 -28.16164 -26.65160 -25.78659 -25.12762 -23.33634 -21.39841 -19.99696 -19.23075 -18.92721 -18.17199 -17.95772 -17.32516 -17.06716 -16.53272 -16.27327 -15.48992 -15.30071 -15.12776 -14.96203 -14.87557 -14.47007 -14.00961 -13.31689 -13.17168 -13.06481 -12.87397 -12.79582 -12.55705 -12.36920 -12.14008 -11.90410 -11.71931 -11.37836 -10.98591 -10.92922 -10.58687 -9.89243 -9.07414 -7.98798 -5.29384 -0.86355 -0.41002 1.30692 1.46949 1.48996 1.57217 1.63777 2.22365 2.28748 2.54618 2.93088 3.10379 3.28904 3.35133 3.60599 3.97229 4.00398 4.06231 4.16224 4.24076 4.24626 4.52773 4.56534 4.66354 4.80204 4.84152 4.95455 5.05823 5.32792 5.46409 6.10680 6.22979 6.47921 6.79503 7.29669 7.39873 8.01097 8.25622 9.24399 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.038757 B = 0.003516 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.271337 B = 7962.811605 C = 8165.717041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.594 5.594 3 C 0.120 3.880 4 C 0.146 3.854 5 N -0.743 5.743 6 C -0.251 4.251 7 H 0.074 0.926 8 C -0.071 4.071 9 N -0.967 5.967 10 Si 0.975 3.025 11 H -0.282 1.282 12 H -0.294 1.294 13 H -0.272 1.272 14 C 0.556 3.444 15 O -0.561 6.561 16 C -0.108 4.108 17 C 0.076 3.924 18 N -0.235 5.235 19 N -0.276 5.276 20 C 0.267 3.733 21 O -0.471 6.471 22 C -0.086 4.086 23 H 0.098 0.902 24 H 0.092 0.908 25 H 0.087 0.913 26 H 0.107 0.893 27 H 0.067 0.933 28 H 0.001 0.999 29 H 0.034 0.966 30 H 0.377 0.623 31 H 0.253 0.747 32 H 0.188 0.812 33 H 0.432 0.568 34 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.494 -15.363 5.236 23.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.325 5.325 3 C -0.003 4.003 4 C 0.018 3.982 5 N -0.387 5.387 6 C -0.383 4.383 7 H 0.091 0.909 8 C -0.264 4.264 9 N -0.617 5.617 10 Si 0.804 3.196 11 H -0.208 1.208 12 H -0.221 1.221 13 H -0.197 1.197 14 C 0.343 3.657 15 O -0.439 6.439 16 C -0.123 4.123 17 C -0.090 4.090 18 N -0.077 5.077 19 N -0.128 5.128 20 C 0.080 3.920 21 O -0.281 6.281 22 C -0.116 4.116 23 H 0.116 0.884 24 H 0.110 0.890 25 H 0.105 0.895 26 H 0.125 0.875 27 H 0.085 0.915 28 H 0.019 0.981 29 H 0.052 0.948 30 H 0.209 0.791 31 H 0.062 0.938 32 H 0.205 0.795 33 H 0.296 0.704 34 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -15.746 -17.060 5.015 23.751 hybrid contribution 0.565 2.294 -0.344 2.388 sum -15.180 -14.766 4.671 21.686 Atomic orbital electron populations 1.22628 0.76328 1.05473 1.04142 1.47736 1.08982 1.04559 1.71208 1.21497 0.97877 0.84352 0.96565 1.20987 0.94570 0.86944 0.95684 1.42373 1.67617 1.23049 1.05618 1.19574 1.29130 1.02596 0.86990 0.90850 1.25589 1.01620 0.98857 1.00296 1.69804 1.45922 1.19897 1.26042 0.85120 0.77115 0.78264 0.79116 1.20826 1.22074 1.19706 1.18314 0.86582 0.83896 0.76884 1.90850 1.15185 1.87317 1.50548 1.21020 0.95802 0.95429 1.00014 1.24668 1.00827 0.88484 0.94984 1.73119 1.00430 1.20136 1.14021 1.72669 1.05401 1.28909 1.05799 1.20779 0.90634 0.89012 0.91567 1.84797 1.12782 1.88089 1.42412 1.23478 0.92922 0.98627 0.96586 0.88370 0.88958 0.89502 0.87496 0.91455 0.98050 0.94844 0.79107 0.93773 0.79458 0.70420 0.78014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.62 8.88 127.77 1.13 1.75 16 2 N -0.59 -13.46 2.87 -849.85 -2.44 -15.90 16 3 C 0.12 3.63 5.53 86.38 0.48 4.10 16 4 C 0.15 5.73 6.58 86.38 0.57 6.30 16 5 N -0.74 -37.60 5.60 -343.45 -1.92 -39.53 16 6 C -0.25 -14.07 9.99 84.03 0.84 -13.23 16 7 H 0.07 3.97 7.83 -2.91 -0.02 3.95 16 8 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 9 N -0.97 -58.60 13.06 21.65 0.28 -58.32 16 10 Si 0.98 45.78 29.55 68.60 2.03 47.80 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 12 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 13 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 14 C 0.56 14.71 7.43 86.88 0.65 15.35 16 15 O -0.56 -20.36 16.49 -3.73 -0.06 -20.42 16 16 C -0.11 -2.18 5.30 -19.85 -0.11 -2.28 16 17 C 0.08 1.69 10.96 85.10 0.93 2.62 16 18 N -0.23 -5.65 11.48 -56.51 -0.65 -6.30 16 19 N -0.28 -6.12 11.50 -170.30 -1.96 -8.08 16 20 C 0.27 4.08 7.85 84.87 0.67 4.75 16 21 O -0.47 -4.56 13.57 -90.23 -1.22 -5.79 16 22 C -0.09 -1.13 7.72 22.90 0.18 -0.95 16 23 H 0.10 0.48 6.89 -2.39 -0.02 0.47 16 24 H 0.09 1.02 8.03 -2.39 -0.02 1.00 16 25 H 0.09 0.70 5.83 -2.39 -0.01 0.69 16 26 H 0.11 2.75 8.07 -2.39 -0.02 2.73 16 27 H 0.07 2.38 7.36 -2.39 -0.02 2.37 16 28 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 29 H 0.03 1.23 8.14 -2.39 -0.02 1.22 16 30 H 0.38 19.96 7.67 -92.71 -0.71 19.25 16 31 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 32 H 0.19 3.94 8.06 -2.91 -0.02 3.92 16 33 H 0.43 -0.70 9.06 -74.06 -0.67 -1.37 16 34 H 0.20 1.19 5.32 -2.91 -0.02 1.18 16 Total: -1.00 -78.62 299.91 -0.37 -78.98 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -0.22 Total: 12.73 kcal Atomic # 6 Polarization: 9.01 SS G_CDS: 5.80 Total: 14.82 kcal Atomic # 7 Polarization: -121.43 SS G_CDS: -6.69 Total: -128.13 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: -1.29 Total: -26.21 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.80 kcal Total: -78.62 -0.37 -78.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663995563.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.068 kcal (2) G-P(sol) polarization free energy of solvation -78.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds