Wall clock time and date at job start Mon Mar 30 2020 19:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 H 1.08998 * 109.47041 * 88.28554 * 3 2 1 5 5 C 1.53001 * 109.46906 * 208.28268 * 3 2 1 6 6 C 1.53003 * 109.46980 * 185.00187 * 5 3 2 7 7 N 1.46503 * 109.47436 * 328.28277 * 3 2 1 8 8 C 1.34774 * 120.00180 * 84.99730 * 7 3 2 9 9 O 1.21593 * 119.99656 * 0.02562 * 8 7 3 10 10 N 1.34769 * 120.00431 * 179.97438 * 8 7 3 11 11 C 1.47025 * 125.64602 * 359.69604 * 10 8 7 12 12 C 1.54330 * 107.26699 * 178.84444 * 11 10 8 13 13 C 1.55160 * 103.02053 * 338.14358 * 12 11 10 14 14 O 1.42897 * 111.00271 * 277.22948 * 13 12 11 15 15 C 1.50706 * 111.03719 * 153.39210 * 13 12 11 16 16 H 1.08001 * 120.00010 * 272.61201 * 15 13 12 17 17 C 1.37881 * 119.99718 * 92.60785 * 15 13 12 18 18 N 1.31515 * 119.99751 * 173.51928 * 17 15 13 19 19 Si 1.86797 * 120.00258 * 353.52146 * 17 15 13 20 20 H 1.48495 * 109.46928 * 87.31840 * 19 17 15 21 21 H 1.48496 * 109.46990 * 207.32434 * 19 17 15 22 22 H 1.48505 * 109.47088 * 327.31862 * 19 17 15 23 23 C 1.47420 * 125.65052 * 179.97438 * 10 8 7 24 24 H 4.18731 * 15.03927 * 0.02562 * 4 2 1 25 25 H 1.08999 * 109.47097 * 304.99997 * 5 3 2 26 26 H 1.09000 * 109.47093 * 65.00247 * 5 3 2 27 27 H 1.08999 * 109.47051 * 299.99838 * 6 5 3 28 28 H 1.09000 * 109.47159 * 60.00100 * 6 5 3 29 29 H 1.09005 * 109.47078 * 179.97438 * 6 5 3 30 30 H 0.96999 * 120.00005 * 265.00414 * 7 3 2 31 31 H 1.08997 * 109.88251 * 298.39522 * 11 10 8 32 32 H 1.09008 * 109.87837 * 59.55741 * 11 10 8 33 33 H 1.09001 * 110.85350 * 219.67480 * 12 11 10 34 34 H 1.09005 * 110.51294 * 96.45219 * 12 11 10 35 35 H 0.96696 * 113.99812 * 168.40212 * 14 13 12 36 36 H 0.96992 * 119.99954 * 180.02562 * 18 17 15 37 37 H 1.08991 * 110.36938 * 322.93418 * 23 10 8 38 38 H 1.09002 * 110.36523 * 85.15240 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0093 -0.0299 -1.0272 5 6 3.1553 1.2712 0.6835 6 6 4.6802 1.3331 0.5736 7 7 3.1349 -1.1741 0.7261 8 6 3.2642 -2.3546 0.0889 9 8 2.9754 -2.4445 -1.0888 10 7 3.7144 -3.4351 0.7567 11 6 4.1048 -3.4653 2.1739 12 6 4.5238 -4.9137 2.5029 13 6 3.8163 -5.7418 1.3978 14 8 2.4558 -6.0048 1.7468 15 6 4.5585 -7.0247 1.1245 16 1 5.3633 -7.0400 0.4044 17 6 4.2100 -8.1787 1.7937 18 7 4.7686 -9.3233 1.4656 19 14 2.9445 -8.1166 3.1663 20 1 1.5835 -8.2667 2.5918 21 1 3.2012 -9.2200 4.1264 22 1 3.0431 -6.8136 3.8719 23 6 3.9025 -4.7812 0.1859 24 1 -1.0500 0.0005 0.0000 25 1 2.7203 2.1445 0.1976 26 1 2.8670 1.2589 1.7346 27 1 5.1152 0.4598 1.0595 28 1 4.9685 1.3454 -0.4775 29 1 5.0431 2.2385 1.0602 30 1 3.3655 -1.1022 1.6656 31 1 4.9419 -2.7878 2.3423 32 1 3.2592 -3.1752 2.7976 33 1 4.1679 -5.2056 3.4910 34 1 5.6061 -5.0234 2.4337 35 1 1.9253 -6.3605 1.0208 36 1 4.5232 -10.1351 1.9361 37 1 3.1121 -5.0031 -0.5310 38 1 4.8793 -4.8576 -0.2918 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000854078607.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:21:45 Heat of formation + Delta-G solvation = -21.663494 kcal Electronic energy + Delta-G solvation = -20629.923565 eV Core-core repulsion = 17474.166053 eV Total energy + Delta-G solvation = -3155.757512 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.06171 -38.11622 -36.39578 -34.72391 -32.50272 -32.35732 -32.21476 -30.15940 -28.37006 -26.85342 -24.94344 -22.64955 -21.95727 -20.03358 -19.77350 -18.57667 -17.79693 -17.37737 -16.24901 -15.63233 -15.14197 -14.97266 -14.74852 -14.45496 -14.11736 -13.62835 -13.47920 -13.15607 -12.68703 -12.39072 -12.19346 -11.96061 -11.74138 -11.60592 -11.55541 -11.30019 -11.03544 -10.65475 -10.49028 -10.39262 -10.21581 -10.18611 -9.81676 -9.24369 -9.22490 -8.67842 -8.53283 -8.02917 -6.19813 -4.31916 2.42832 2.79998 3.23920 3.45455 3.47410 3.51666 3.68567 4.21312 4.29780 4.49346 4.71967 4.80495 5.00385 5.06023 5.13692 5.32743 5.40869 5.48834 5.55872 5.66281 5.73820 5.80984 5.87739 5.91614 6.01723 6.08738 6.48154 6.52048 6.53896 6.64541 6.71710 7.04431 7.30125 7.47400 7.58338 8.12020 8.25199 8.61740 8.81086 8.86465 9.41700 10.89060 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.032160 B = 0.004847 C = 0.004685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.435108 B = 5775.564534 C = 5974.475850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.195 4.195 3 C 0.273 3.727 4 H 0.109 0.891 5 C -0.123 4.123 6 C -0.152 4.152 7 N -0.739 5.739 8 C 0.720 3.280 9 O -0.594 6.594 10 N -0.627 5.627 11 C 0.101 3.899 12 C -0.120 4.120 13 C 0.219 3.781 14 O -0.559 6.559 15 C -0.552 4.552 16 H 0.082 0.918 17 C 0.075 3.925 18 N -0.888 5.888 19 Si 0.951 3.049 20 H -0.293 1.293 21 H -0.326 1.326 22 H -0.270 1.270 23 C 0.108 3.892 24 H 0.216 0.784 25 H 0.081 0.919 26 H 0.071 0.929 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.397 0.603 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.371 0.629 36 H 0.267 0.733 37 H 0.069 0.931 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.984 19.256 1.968 19.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.196 4.196 3 C 0.167 3.833 4 H 0.126 0.874 5 C -0.161 4.161 6 C -0.210 4.210 7 N -0.395 5.395 8 C 0.422 3.578 9 O -0.473 6.473 10 N -0.364 5.364 11 C -0.022 4.022 12 C -0.158 4.158 13 C 0.179 3.821 14 O -0.367 6.367 15 C -0.590 4.590 16 H 0.100 0.900 17 C -0.130 4.130 18 N -0.523 5.523 19 Si 0.787 3.213 20 H -0.221 1.221 21 H -0.258 1.258 22 H -0.196 1.196 23 C -0.014 4.014 24 H 0.233 0.767 25 H 0.100 0.900 26 H 0.089 0.911 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.231 0.769 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.219 0.781 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.942 19.277 1.632 19.569 hybrid contribution -0.962 -0.306 0.629 1.190 sum -3.904 18.971 2.261 19.500 Atomic orbital electron populations 1.24920 0.95907 0.99609 1.00739 1.23648 0.94900 1.00751 1.00343 1.17639 0.82870 0.84663 0.98116 0.87375 1.21768 0.96924 0.96064 1.01392 1.21776 0.94569 1.02102 1.02520 1.45151 1.71874 1.08441 1.14064 1.15465 0.78198 0.79579 0.84512 1.90898 1.57858 1.84040 1.14502 1.47705 1.67683 1.09530 1.11462 1.22063 0.98362 0.99827 0.81996 1.22949 1.01181 0.90824 1.00826 1.20250 0.79882 0.92950 0.89033 1.86104 1.23897 1.85322 1.41385 1.21111 1.19955 0.91320 1.26591 0.90021 1.25107 0.96218 0.94708 0.96962 1.69967 1.42845 0.98850 1.40590 0.85642 0.79987 0.75352 0.80317 1.22083 1.25802 1.19615 1.22994 1.01402 0.79061 0.97989 0.76734 0.89997 0.91060 0.92169 0.92237 0.92233 0.76874 0.92662 0.92528 0.90183 0.89584 0.78056 0.92392 0.91236 0.91162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.36 19.25 29.55 0.57 -1.79 16 2 C -0.19 -2.63 12.84 -37.12 -0.48 -3.10 16 3 C 0.27 3.33 2.41 -70.72 -0.17 3.16 16 4 H 0.11 1.46 7.58 -51.93 -0.39 1.07 16 5 C -0.12 -1.03 5.43 -26.73 -0.15 -1.17 16 6 C -0.15 -1.18 9.80 37.16 0.36 -0.81 16 7 N -0.74 -10.13 4.46 -61.44 -0.27 -10.40 16 8 C 0.72 13.12 8.43 -86.93 -0.73 12.39 16 9 O -0.59 -12.98 16.26 5.28 0.09 -12.90 16 10 N -0.63 -11.43 3.33 -176.25 -0.59 -12.02 16 11 C 0.10 1.60 6.15 -3.06 -0.02 1.58 16 12 C -0.12 -2.27 5.90 -24.89 -0.15 -2.42 16 13 C 0.22 4.80 0.70 -89.63 -0.06 4.73 16 14 O -0.56 -12.22 8.52 -35.23 -0.30 -12.52 16 15 C -0.55 -14.47 8.89 -34.44 -0.31 -14.77 16 16 H 0.08 2.32 8.00 -52.49 -0.42 1.90 16 17 C 0.08 2.07 5.46 -17.82 -0.10 1.97 16 18 N -0.89 -26.11 13.96 55.43 0.77 -25.34 16 19 Si 0.95 23.20 24.93 -169.99 -4.24 18.97 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 21 H -0.33 -8.17 7.11 56.52 0.40 -7.77 16 22 H -0.27 -6.41 5.42 56.52 0.31 -6.11 16 23 C 0.11 2.21 6.07 -2.54 -0.02 2.20 16 24 H 0.22 1.84 7.80 -54.09 -0.42 1.42 16 25 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.51 7.75 -51.93 -0.40 0.11 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.40 4.53 7.59 -40.82 -0.31 4.22 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.85 8.14 -51.92 -0.42 0.42 16 33 H 0.08 1.56 6.65 -51.93 -0.35 1.22 16 34 H 0.09 1.59 8.03 -51.93 -0.42 1.18 16 35 H 0.37 7.36 8.98 45.56 0.41 7.77 16 36 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.07 1.47 8.02 -51.93 -0.42 1.06 16 38 H 0.07 1.46 7.99 -51.93 -0.41 1.05 16 LS Contribution 317.96 15.07 4.79 4.79 Total: -1.00 -33.08 317.96 -5.88 -38.97 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -4.90 Total: 8.50 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: -1.24 Total: 1.95 kcal Atomic # 7 Polarization: -47.67 SS G_CDS: -0.09 Total: -47.76 kcal Atomic # 8 Polarization: -25.21 SS G_CDS: -0.21 Total: -25.42 kcal Atomic # 14 Polarization: 23.20 SS G_CDS: -4.24 Total: 18.97 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -33.08 -5.88 -38.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854078607.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.303 kcal (2) G-P(sol) polarization free energy of solvation -33.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds