Wall clock time and date at job start Mon Mar 30 2020 19:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34170 * 127.02383 * 2 1 4 4 O 1.34222 * 109.12675 * 179.83573 * 3 2 1 5 5 C 1.33654 * 110.90333 * 0.44769 * 4 3 2 6 6 C 1.36410 * 108.39863 * 359.73144 * 5 4 3 7 7 C 1.47385 * 127.19311 * 179.97438 * 6 5 4 8 8 O 1.21616 * 119.99705 * 149.45419 * 7 6 5 9 9 N 1.34770 * 120.00063 * 329.45624 * 7 6 5 10 10 C 1.46505 * 120.00098 * 4.29189 * 9 7 6 11 11 C 1.46501 * 120.00280 * 184.29046 * 9 7 6 12 12 C 1.52997 * 109.47264 * 90.00040 * 11 9 7 13 13 C 1.52998 * 109.47395 * 180.02562 * 12 11 9 14 14 N 1.46495 * 109.47644 * 179.97438 * 13 12 11 15 15 C 1.36932 * 120.00430 * 179.97438 * 14 13 12 16 16 H 1.08006 * 119.99847 * 359.97438 * 15 14 13 17 17 C 1.38810 * 120.00463 * 180.02562 * 15 14 13 18 18 N 1.31619 * 120.00665 * 180.02562 * 17 15 14 19 19 Si 1.86809 * 119.99815 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.46869 * 90.00084 * 19 17 15 21 21 H 1.48493 * 109.47393 * 210.00434 * 19 17 15 22 22 H 1.48507 * 109.46942 * 330.00632 * 19 17 15 23 23 H 1.08992 * 109.47304 * 269.68648 * 1 2 3 24 24 H 1.09000 * 109.46933 * 149.68420 * 1 2 3 25 25 H 1.09005 * 109.46682 * 29.68981 * 1 2 3 26 26 H 1.08002 * 125.44074 * 0.02562 * 3 2 1 27 27 H 1.08007 * 125.79960 * 179.73460 * 5 4 3 28 28 H 1.08991 * 109.47273 * 95.67375 * 10 9 7 29 29 H 1.08997 * 109.47091 * 215.67875 * 10 9 7 30 30 H 1.09007 * 109.46645 * 335.67192 * 10 9 7 31 31 H 1.09001 * 109.47138 * 210.00381 * 11 9 7 32 32 H 1.09001 * 109.47017 * 329.99917 * 11 9 7 33 33 H 1.09000 * 109.46862 * 299.99972 * 12 11 9 34 34 H 1.09001 * 109.47204 * 59.99991 * 12 11 9 35 35 H 1.09001 * 109.46784 * 300.00204 * 13 12 11 36 36 H 1.09001 * 109.47240 * 59.99660 * 13 12 11 37 37 H 0.97002 * 119.99561 * 0.02562 * 14 13 12 38 38 H 0.96992 * 119.99953 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0712 0.0000 4 8 3.5922 0.6587 0.0036 5 6 3.6623 -0.6760 -0.0037 6 6 2.3923 -1.1738 -0.0064 7 6 1.9913 -2.5920 -0.0147 8 8 0.9531 -2.9335 0.5188 9 7 2.7752 -3.5105 -0.6133 10 6 4.0700 -3.1153 -1.1733 11 6 2.3325 -4.9040 -0.7041 12 6 1.5450 -5.1056 -2.0002 13 6 1.0821 -6.5608 -2.0948 14 7 0.3275 -6.7537 -3.3355 15 6 -0.1892 -7.9851 -3.6383 16 1 -0.0401 -8.8143 -2.9625 17 6 -0.9038 -8.1681 -4.8142 18 7 -1.4010 -9.3515 -5.1050 19 14 -1.1612 -6.7340 -5.9834 20 1 -0.0447 -6.6863 -6.9614 21 1 -2.4460 -6.9096 -6.7069 22 1 -1.1972 -5.4661 -5.2112 23 1 -0.3633 -0.0056 1.0276 24 1 -0.3633 -0.8871 -0.5187 25 1 -0.3633 0.8928 -0.5090 26 1 1.9895 2.1010 0.0004 27 1 4.5703 -1.2609 -0.0068 28 1 4.8566 -3.3141 -0.4455 29 1 4.2626 -3.6863 -2.0816 30 1 4.0541 -2.0512 -1.4097 31 1 3.2014 -5.5622 -0.7008 32 1 1.6954 -5.1392 0.1485 33 1 0.6761 -4.4474 -2.0035 34 1 2.1821 -4.8705 -2.8528 35 1 1.9508 -7.2193 -2.0913 36 1 0.4449 -6.7956 -1.2422 37 1 0.1945 -6.0093 -3.9430 38 1 -1.9006 -9.4792 -5.9264 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483484708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:23:06 Heat of formation + Delta-G solvation = -26.235355 kcal Electronic energy + Delta-G solvation = -19791.910353 eV Core-core repulsion = 16635.954590 eV Total energy + Delta-G solvation = -3155.955762 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.56004 -40.74126 -37.66434 -36.56091 -34.90132 -34.20868 -32.60961 -31.09445 -28.34950 -27.97840 -27.19131 -24.84284 -23.32004 -22.55429 -21.61474 -20.31787 -19.68863 -18.48014 -17.56802 -17.16525 -17.04899 -16.58284 -16.17622 -16.00293 -15.69624 -15.32004 -14.88543 -14.52059 -14.33900 -14.10477 -13.94312 -13.77286 -13.61312 -13.45658 -12.96835 -12.83451 -12.79883 -12.54029 -12.45921 -12.09185 -11.87193 -11.83442 -11.12854 -11.01426 -10.52821 -9.74477 -9.59302 -9.35346 -8.06864 -5.41251 0.41158 1.06628 1.34144 1.38022 1.45417 1.78102 2.07619 2.23513 2.44728 3.24051 3.48563 3.57181 3.64472 3.87355 4.06166 4.14224 4.25021 4.29483 4.36461 4.47337 4.55954 4.63662 4.68665 4.72933 4.85606 4.88023 4.90829 4.99546 5.03044 5.21174 5.23768 5.43858 5.48723 5.70924 6.00070 6.17397 6.32188 7.02788 7.09504 7.78739 7.97952 9.14697 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.026947 B = 0.003779 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.845418 B = 7406.665728 C = 7784.885992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.173 4.173 3 C -0.026 4.026 4 O -0.172 6.172 5 C 0.037 3.963 6 C -0.266 4.266 7 C 0.574 3.426 8 O -0.582 6.582 9 N -0.608 5.608 10 C 0.049 3.951 11 C 0.126 3.874 12 C -0.126 4.126 13 C 0.157 3.843 14 N -0.762 5.762 15 C -0.241 4.241 16 H 0.058 0.942 17 C -0.063 4.063 18 N -0.982 5.982 19 Si 0.958 3.042 20 H -0.271 1.271 21 H -0.292 1.292 22 H -0.260 1.260 23 H 0.067 0.933 24 H 0.039 0.961 25 H 0.092 0.908 26 H 0.244 0.756 27 H 0.255 0.745 28 H 0.093 0.907 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.113 0.887 32 H 0.067 0.933 33 H 0.039 0.961 34 H 0.077 0.923 35 H 0.041 0.959 36 H 0.016 0.984 37 H 0.365 0.635 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.376 25.363 10.472 31.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.175 4.175 3 C -0.091 4.091 4 O -0.067 6.067 5 C -0.033 4.033 6 C -0.271 4.271 7 C 0.365 3.635 8 O -0.463 6.463 9 N -0.339 5.339 10 C -0.092 4.092 11 C 0.003 3.997 12 C -0.165 4.165 13 C 0.031 3.969 14 N -0.407 5.407 15 C -0.372 4.372 16 H 0.076 0.924 17 C -0.255 4.255 18 N -0.633 5.633 19 Si 0.785 3.215 20 H -0.196 1.196 21 H -0.219 1.219 22 H -0.185 1.185 23 H 0.086 0.914 24 H 0.058 0.942 25 H 0.110 0.890 26 H 0.260 0.740 27 H 0.270 0.730 28 H 0.111 0.889 29 H 0.104 0.896 30 H 0.111 0.889 31 H 0.131 0.869 32 H 0.085 0.915 33 H 0.058 0.942 34 H 0.096 0.904 35 H 0.059 0.941 36 H 0.035 0.965 37 H 0.198 0.802 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 16.065 25.147 10.797 31.734 hybrid contribution -1.058 -0.189 -0.824 1.354 sum 15.007 24.958 9.973 30.783 Atomic orbital electron populations 1.20112 0.88902 1.02398 1.02297 1.21652 0.97536 0.91342 1.06954 1.24300 0.78912 1.00481 1.05429 1.83849 1.29735 1.22470 1.70614 1.25434 0.98836 0.80833 0.98182 1.21424 0.95435 0.93196 1.17006 1.17849 0.82916 0.85137 0.77619 1.90771 1.26548 1.81836 1.47181 1.47806 1.20654 1.08529 1.56947 1.22620 0.82837 1.03121 1.00653 1.21340 1.00139 0.81474 0.96780 1.21924 0.99781 0.95583 0.99218 1.20683 0.94118 0.94912 0.87235 1.42748 1.65933 1.08509 1.23554 1.19082 1.26445 0.88087 1.03586 0.92400 1.25539 1.00341 0.99434 1.00155 1.69881 1.42553 1.23871 1.26977 0.85370 0.77479 0.79621 0.79072 1.19622 1.21872 1.18524 0.91412 0.94156 0.88970 0.73953 0.72980 0.88853 0.89604 0.88875 0.86868 0.91473 0.94186 0.90439 0.94095 0.96549 0.80245 0.93148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.70 10.04 71.24 0.72 -0.99 16 2 C -0.17 -3.56 6.37 -18.49 -0.12 -3.68 16 3 C -0.03 -0.34 11.96 66.89 0.80 0.46 16 4 O -0.17 -2.30 10.52 4.39 0.05 -2.25 16 5 C 0.04 0.48 9.73 67.39 0.66 1.14 16 6 C -0.27 -5.83 5.78 -18.99 -0.11 -5.94 16 7 C 0.57 16.25 7.61 86.65 0.66 16.91 16 8 O -0.58 -22.14 16.00 -4.08 -0.07 -22.20 16 9 N -0.61 -13.47 2.87 -850.71 -2.44 -15.91 16 10 C 0.05 0.54 9.11 127.77 1.16 1.70 16 11 C 0.13 3.18 5.47 86.38 0.47 3.65 16 12 C -0.13 -3.98 5.65 30.59 0.17 -3.80 16 13 C 0.16 6.27 6.26 86.38 0.54 6.81 16 14 N -0.76 -37.93 5.41 -343.46 -1.86 -39.79 16 15 C -0.24 -14.44 10.47 84.03 0.88 -13.56 16 16 H 0.06 3.76 8.06 -2.91 -0.02 3.74 16 17 C -0.06 -3.85 5.50 84.86 0.47 -3.39 16 18 N -0.98 -64.56 13.97 21.65 0.30 -64.26 16 19 Si 0.96 47.03 27.74 68.60 1.90 48.94 16 20 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 21 H -0.29 -14.38 7.11 99.48 0.71 -13.68 16 22 H -0.26 -11.89 6.52 99.48 0.65 -11.25 16 23 H 0.07 1.43 8.14 -2.39 -0.02 1.42 16 24 H 0.04 1.10 7.86 -2.39 -0.02 1.09 16 25 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 26 H 0.24 1.11 8.06 -2.91 -0.02 1.09 16 27 H 0.25 1.06 5.95 -2.91 -0.02 1.04 16 28 H 0.09 0.48 7.92 -2.39 -0.02 0.46 16 29 H 0.09 0.87 8.11 -2.39 -0.02 0.85 16 30 H 0.09 0.82 4.62 -2.38 -0.01 0.81 16 31 H 0.11 2.14 8.07 -2.39 -0.02 2.12 16 32 H 0.07 2.01 7.37 -2.39 -0.02 1.99 16 33 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.36 17.38 5.53 -92.71 -0.51 16.87 16 38 H 0.26 16.14 8.31 -92.71 -0.77 15.37 16 Total: -1.00 -83.72 319.91 4.68 -79.04 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: 0.49 Total: 17.13 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: 6.30 Total: -0.70 kcal Atomic # 7 Polarization: -115.96 SS G_CDS: -4.00 Total: -119.95 kcal Atomic # 8 Polarization: -24.43 SS G_CDS: -0.02 Total: -24.45 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 1.90 Total: 48.94 kcal Total: -83.72 4.68 -79.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483484708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.804 kcal (2) G-P(sol) polarization free energy of solvation -83.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds