Wall clock time and date at job start Mon Mar 30 2020 19:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35132 * 126.44186 * 2 1 4 4 O 1.33931 * 108.76486 * 179.75567 * 3 2 1 5 5 C 1.34917 * 109.38430 * 0.40582 * 4 3 2 6 6 C 1.46661 * 125.98755 * 179.85735 * 5 4 3 7 7 O 1.21693 * 119.99963 * 179.68780 * 6 5 4 8 8 N 1.34784 * 119.99807 * 359.69935 * 6 5 4 9 9 C 1.46505 * 119.99673 * 179.97438 * 8 6 5 10 10 C 1.53003 * 109.46763 * 179.97438 * 9 8 6 11 11 H 1.08999 * 109.46894 * 64.99759 * 10 9 8 12 12 C 1.52999 * 109.46768 * 185.00196 * 10 9 8 13 13 N 1.46497 * 109.47137 * 305.00028 * 10 9 8 14 14 C 1.46501 * 119.99968 * 299.99808 * 13 10 9 15 15 C 1.36938 * 120.00336 * 120.00086 * 13 10 9 16 16 H 1.08005 * 119.99600 * 336.48608 * 15 13 10 17 17 C 1.38810 * 120.00421 * 156.47985 * 15 13 10 18 18 N 1.31617 * 119.99900 * 330.38323 * 17 15 13 19 19 Si 1.86805 * 120.00046 * 150.09913 * 17 15 13 20 20 H 1.48503 * 109.46840 * 90.00167 * 19 17 15 21 21 H 1.48500 * 109.47253 * 210.00529 * 19 17 15 22 22 H 1.48498 * 109.46846 * 330.00465 * 19 17 15 23 23 C 1.36536 * 108.02500 * 359.60076 * 5 4 3 24 24 H 1.08996 * 109.47251 * 270.00081 * 1 2 3 25 25 H 1.09004 * 109.46986 * 29.99483 * 1 2 3 26 26 H 1.08995 * 109.47128 * 149.99382 * 1 2 3 27 27 H 1.07993 * 125.61489 * 359.96598 * 3 2 1 28 28 H 0.96992 * 119.99849 * 359.97438 * 8 6 5 29 29 H 1.08999 * 109.46759 * 59.99433 * 9 8 6 30 30 H 1.08996 * 109.46756 * 299.99390 * 9 8 6 31 31 H 1.09003 * 109.46828 * 299.99617 * 12 10 9 32 32 H 1.08998 * 109.47296 * 59.99865 * 12 10 9 33 33 H 1.09001 * 109.46840 * 180.02562 * 12 10 9 34 34 H 1.08999 * 109.47628 * 274.79385 * 14 13 10 35 35 H 1.08996 * 109.47262 * 34.80200 * 14 13 10 36 36 H 1.09007 * 109.46742 * 154.79664 * 14 13 10 37 37 H 0.96994 * 120.00150 * 353.94765 * 18 17 15 38 38 H 1.08006 * 126.64468 * 180.22022 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0871 0.0000 4 8 3.5858 0.6804 0.0054 5 6 3.6260 -0.6681 -0.0001 6 6 4.8379 -1.4942 0.0003 7 8 4.7470 -2.7077 0.0007 8 7 6.0521 -0.9092 0.0003 9 6 7.2627 -1.7344 0.0012 10 6 8.4965 -0.8296 0.0004 11 1 8.5326 -0.2636 0.9313 12 6 9.7575 -1.6871 -0.1244 13 7 8.4220 0.0969 -1.1319 14 6 8.3630 -0.4223 -2.5005 15 6 8.4074 1.4483 -0.9110 16 1 8.0742 1.8364 0.0402 17 6 8.8211 2.3193 -1.9096 18 7 9.7274 1.9357 -2.7835 19 14 8.0856 4.0330 -2.0178 20 1 8.8989 4.9729 -1.2052 21 1 8.0793 4.4805 -3.4338 22 1 6.6938 4.0079 -1.5005 23 6 2.3408 -1.1292 -0.0001 24 1 -0.3633 0.0000 1.0276 25 1 -0.3633 0.8901 -0.5138 26 1 -0.3633 -0.8899 -0.5139 27 1 1.9770 2.1145 -0.0005 28 1 6.1244 0.0580 -0.0002 29 1 7.2737 -2.3642 -0.8883 30 1 7.2732 -2.3629 0.8916 31 1 9.8130 -2.3764 0.7181 32 1 9.7214 -2.2531 -1.0552 33 1 10.6366 -1.0426 -0.1245 34 1 9.3739 -0.6119 -2.8611 35 1 7.7927 -1.3510 -2.5125 36 1 7.8783 0.3101 -3.1463 37 1 10.1701 1.0791 -2.6789 38 1 2.0266 -2.1625 -0.0005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755314708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:23:06 Heat of formation + Delta-G solvation = -8.481512 kcal Electronic energy + Delta-G solvation = -20483.768106 eV Core-core repulsion = 17328.582208 eV Total energy + Delta-G solvation = -3155.185898 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.63013 -39.18079 -36.91960 -34.40696 -33.86506 -32.14024 -30.51061 -29.25199 -27.51609 -26.19341 -25.91336 -23.08654 -22.47848 -21.05819 -19.76344 -19.30833 -17.77393 -17.45640 -16.29957 -16.16190 -15.67309 -15.21110 -14.22631 -14.09344 -13.79625 -13.58135 -13.52604 -13.29572 -13.01002 -12.85782 -12.61926 -12.27014 -12.17072 -11.80345 -11.60585 -11.26473 -10.81943 -10.70900 -10.57922 -10.24759 -10.04827 -10.01337 -9.70586 -9.50010 -8.81495 -8.45554 -8.37379 -7.01178 -6.12377 -3.24794 1.18420 2.31150 2.83055 3.40064 3.46797 3.51474 3.57347 3.66187 4.54440 4.72815 4.78109 4.92114 5.18413 5.30402 5.33954 5.45290 5.47830 5.60869 5.70094 5.79650 5.88485 5.93934 5.98697 6.05775 6.17007 6.30077 6.38430 6.53164 6.64626 6.71409 6.81567 6.89807 6.98748 7.11062 7.88571 7.92092 8.40203 8.52642 9.06388 9.80297 10.19743 11.15966 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.016758 B = 0.006260 C = 0.004799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.418075 B = 4472.005020 C = 5833.538595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.199 4.199 3 C -0.011 4.011 4 O -0.154 6.154 5 C -0.064 4.064 6 C 0.594 3.406 7 O -0.539 6.539 8 N -0.692 5.692 9 C 0.106 3.894 10 C 0.157 3.843 11 H 0.071 0.929 12 C -0.158 4.158 13 N -0.596 5.596 14 C 0.136 3.864 15 C -0.364 4.364 16 H 0.059 0.941 17 C -0.017 4.017 18 N -0.908 5.908 19 Si 1.058 2.942 20 H -0.295 1.295 21 H -0.287 1.287 22 H -0.291 1.291 23 C -0.129 4.129 24 H 0.067 0.933 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.207 0.793 28 H 0.417 0.583 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.045 0.955 32 H 0.049 0.951 33 H 0.058 0.942 34 H 0.009 0.991 35 H 0.015 0.985 36 H 0.052 0.948 37 H 0.271 0.729 38 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.470 -3.397 6.001 15.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.201 4.201 3 C -0.081 4.081 4 O -0.048 6.048 5 C -0.117 4.117 6 C 0.379 3.621 7 O -0.419 6.419 8 N -0.342 5.342 9 C -0.020 4.020 10 C 0.049 3.951 11 H 0.089 0.911 12 C -0.218 4.218 13 N -0.319 5.319 14 C -0.009 4.009 15 C -0.493 4.493 16 H 0.077 0.923 17 C -0.220 4.220 18 N -0.547 5.547 19 Si 0.888 3.112 20 H -0.222 1.222 21 H -0.213 1.213 22 H -0.218 1.218 23 C -0.149 4.149 24 H 0.085 0.915 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.224 0.776 28 H 0.254 0.746 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.027 0.973 35 H 0.033 0.967 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -13.235 -2.646 5.079 14.421 hybrid contribution 0.028 -0.932 0.850 1.262 sum -13.208 -3.577 5.929 14.913 Atomic orbital electron populations 1.20147 0.88822 1.02691 1.02083 1.20443 0.97531 0.92467 1.09629 1.24199 0.80123 1.00010 1.03780 1.84155 1.29090 1.21690 1.69892 1.22214 0.96302 0.80603 1.12533 1.16614 0.81581 0.86280 0.77619 1.90829 1.86277 1.12335 1.52492 1.45866 1.04668 1.12126 1.71500 1.22007 0.84812 0.94039 1.01125 1.20647 0.90693 0.90788 0.93007 0.91059 1.22192 0.99488 0.99608 1.00473 1.44038 1.85750 1.02257 0.99881 1.20905 0.97392 0.96127 0.86488 1.19919 1.44099 0.81548 1.03709 0.92339 1.25712 0.96235 1.03579 0.96482 1.70745 1.20419 1.23173 1.40384 0.83662 0.75782 0.75608 0.76170 1.22247 1.21257 1.21777 1.21763 0.90571 1.00338 1.02256 0.91471 0.91554 0.91444 0.77637 0.74564 0.91840 0.91957 0.93641 0.93214 0.92254 0.97341 0.96695 0.92912 0.91792 0.82544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.66 10.39 36.01 0.37 -0.29 16 2 C -0.20 -2.36 6.14 -104.93 -0.64 -3.00 16 3 C -0.01 -0.13 12.00 29.63 0.36 0.22 16 4 O -0.15 -2.41 10.40 4.99 0.05 -2.36 16 5 C -0.06 -1.05 7.13 -36.80 -0.26 -1.32 16 6 C 0.59 10.96 7.79 -12.86 -0.10 10.86 16 7 O -0.54 -10.98 16.86 5.20 0.09 -10.90 16 8 N -0.69 -12.78 5.38 -61.62 -0.33 -13.12 16 9 C 0.11 1.90 4.90 -4.04 -0.02 1.88 16 10 C 0.16 3.05 2.88 -67.93 -0.20 2.86 16 11 H 0.07 1.40 7.87 -51.93 -0.41 1.00 16 12 C -0.16 -2.77 9.19 37.16 0.34 -2.42 16 13 N -0.60 -13.90 2.16 -173.48 -0.38 -14.28 16 14 C 0.14 3.18 8.05 59.85 0.48 3.66 16 15 C -0.36 -9.52 9.12 -15.06 -0.14 -9.66 16 16 H 0.06 1.52 7.95 -52.48 -0.42 1.10 16 17 C -0.02 -0.45 4.59 -17.43 -0.08 -0.53 16 18 N -0.91 -26.54 12.68 55.49 0.70 -25.84 16 19 Si 1.06 24.53 30.01 -169.99 -5.10 19.43 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 23 C -0.13 -1.83 10.57 -39.40 -0.42 -2.25 16 24 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.21 1.62 8.06 -52.49 -0.42 1.20 16 28 H 0.42 8.06 7.65 -40.82 -0.31 7.75 16 29 H 0.06 1.19 6.92 -51.93 -0.36 0.84 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.87 7.67 -51.93 -0.40 0.47 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.01 0.21 6.98 -51.93 -0.36 -0.16 16 35 H 0.01 0.31 6.56 -51.93 -0.34 -0.03 16 36 H 0.05 1.35 7.15 -51.93 -0.37 0.98 16 37 H 0.27 7.98 6.45 -40.82 -0.26 7.72 16 38 H 0.16 2.05 8.06 -52.48 -0.42 1.63 16 LS Contribution 321.73 15.07 4.85 4.85 Total: -1.00 -30.82 321.73 -5.83 -36.65 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -5.41 Total: 5.54 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: -0.30 Total: 0.02 kcal Atomic # 7 Polarization: -53.22 SS G_CDS: 0.00 Total: -53.23 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: 0.14 Total: -13.25 kcal Atomic # 14 Polarization: 24.53 SS G_CDS: -5.10 Total: 19.43 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.82 -5.83 -36.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755314708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.171 kcal (2) G-P(sol) polarization free energy of solvation -30.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds