Wall clock time and date at job start Mon Mar 30 2020 19:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47025 * 2 1 4 4 N 1.46499 * 109.47084 * 180.02562 * 3 2 1 5 5 C 1.46505 * 120.00230 * 269.99853 * 4 3 2 6 6 C 1.50693 * 109.47160 * 270.00512 * 5 4 3 7 7 H 1.08005 * 120.00138 * 359.97438 * 6 5 4 8 8 C 1.37882 * 119.99887 * 179.97438 * 6 5 4 9 9 N 1.31509 * 120.00076 * 0.02562 * 8 6 5 10 10 Si 1.86807 * 119.99799 * 179.97438 * 8 6 5 11 11 H 1.48488 * 109.47128 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.46887 * 120.00260 * 10 8 6 13 13 H 1.48504 * 109.46907 * 239.99984 * 10 8 6 14 14 C 1.34781 * 120.00259 * 90.00100 * 4 3 2 15 15 O 1.21584 * 119.99970 * 179.97438 * 14 4 3 16 16 N 1.34771 * 119.99489 * 0.02562 * 14 4 3 17 17 C 1.46505 * 119.99622 * 180.02562 * 16 14 4 18 18 C 1.50703 * 109.47064 * 179.97438 * 17 16 14 19 19 C 1.34515 * 125.79060 * 89.99944 * 18 17 16 20 20 C 1.41380 * 106.83832 * 179.97438 * 19 18 17 21 21 C 1.34506 * 106.84493 * 359.97438 * 20 19 18 22 22 O 1.34306 * 125.78568 * 269.69282 * 18 17 16 23 23 H 1.08996 * 109.46833 * 299.99745 * 1 2 3 24 24 H 1.08999 * 109.47231 * 60.00423 * 1 2 3 25 25 H 1.08997 * 109.46834 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47177 * 240.00005 * 2 1 3 27 27 H 1.09004 * 109.47601 * 119.99874 * 2 1 3 28 28 H 1.09002 * 109.47139 * 59.99982 * 3 2 1 29 29 H 1.09001 * 109.47263 * 299.99719 * 3 2 1 30 30 H 1.09002 * 109.46764 * 30.00200 * 5 4 3 31 31 H 1.08993 * 109.47395 * 149.99993 * 5 4 3 32 32 H 0.97002 * 120.00054 * 179.97438 * 9 8 6 33 33 H 0.96996 * 120.00772 * 359.97438 * 16 14 4 34 34 H 1.09002 * 109.47068 * 299.99729 * 17 16 14 35 35 H 1.09001 * 109.47372 * 59.99816 * 17 16 14 36 36 H 1.07996 * 126.58016 * 0.03378 * 19 18 17 37 37 H 1.08006 * 126.57610 * 179.97438 * 20 19 18 38 38 H 1.08005 * 125.79499 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2381 1.4424 1.2678 6 6 4.4893 2.8631 1.7030 7 1 4.1384 3.6841 1.0953 8 6 5.1672 3.1149 2.8769 9 7 5.5949 2.1152 3.6167 10 14 5.4792 4.8760 3.4160 11 1 4.9027 5.8094 2.4153 12 1 4.8418 5.1097 4.7367 13 1 6.9419 5.1087 3.5242 14 6 4.1784 1.4427 -1.1681 15 8 5.3943 1.4432 -1.1686 16 7 3.5040 1.4434 -2.3349 17 6 4.2360 1.4431 -3.6040 18 6 3.2563 1.4434 -4.7491 19 6 2.7452 2.5347 -5.3468 20 6 1.8762 2.0758 -6.3632 21 6 1.9085 0.7316 -6.3261 22 8 2.7497 0.3541 -5.3495 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.6767 1.9564 -0.8900 30 1 3.6493 0.9284 2.0276 31 1 5.1904 0.9286 1.1370 32 1 6.0721 2.2923 4.4424 33 1 2.5341 1.4434 -2.3346 34 1 4.8633 2.3326 -3.6619 35 1 4.8620 0.5527 -3.6622 36 1 2.9586 3.5639 -5.0987 37 1 1.2973 2.6873 -7.0396 38 1 1.3550 0.0683 -6.9743 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188157696.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:22:24 Heat of formation + Delta-G solvation = -37.913372 kcal Electronic energy + Delta-G solvation = -20185.525014 eV Core-core repulsion = 17029.062854 eV Total energy + Delta-G solvation = -3156.462159 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.52836 -41.09674 -37.35334 -36.18240 -34.97507 -33.89023 -33.53376 -31.44087 -29.32248 -27.17948 -26.56025 -24.54521 -22.69802 -22.66221 -21.57999 -20.90632 -19.27325 -18.55051 -18.09122 -17.58734 -16.90534 -16.50181 -16.33053 -15.72722 -15.52818 -15.15229 -14.97053 -14.55144 -14.16511 -14.01599 -13.74644 -13.52184 -13.41348 -13.07541 -12.94079 -12.92509 -12.76004 -12.46095 -12.23278 -12.10588 -11.67979 -11.62099 -11.13321 -10.86538 -10.61947 -10.23375 -9.52564 -9.33142 -8.18872 -6.33598 0.61533 1.37844 1.40509 1.52112 1.61264 1.90022 2.16000 2.26273 2.42958 3.09046 3.15952 3.64274 3.98320 4.12510 4.13043 4.16041 4.35463 4.40075 4.49732 4.59782 4.72584 4.89798 4.96353 4.98863 5.02752 5.14558 5.18710 5.20386 5.27258 5.42302 5.44853 5.59091 5.60617 5.81862 6.09872 6.12957 6.18700 6.75624 7.13936 7.33430 7.71075 8.87938 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.021177 B = 0.004748 C = 0.004261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.897657 B = 5895.912589 C = 6569.751448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.137 4.137 3 C 0.111 3.889 4 N -0.617 5.617 5 C 0.279 3.721 6 C -0.540 4.540 7 H 0.052 0.948 8 C 0.008 3.992 9 N -0.929 5.929 10 Si 0.968 3.032 11 H -0.268 1.268 12 H -0.269 1.269 13 H -0.282 1.282 14 C 0.698 3.302 15 O -0.638 6.638 16 N -0.734 5.734 17 C 0.223 3.777 18 C -0.051 4.051 19 C -0.185 4.185 20 C -0.227 4.227 21 C -0.026 4.026 22 O -0.189 6.189 23 H 0.058 0.942 24 H 0.070 0.930 25 H 0.065 0.935 26 H 0.058 0.942 27 H 0.047 0.953 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.025 0.975 31 H -0.002 1.002 32 H 0.267 0.733 33 H 0.406 0.594 34 H 0.092 0.908 35 H 0.069 0.931 36 H 0.157 0.843 37 H 0.174 0.826 38 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.028 -1.835 -18.226 23.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.176 4.176 3 C -0.012 4.012 4 N -0.351 5.351 5 C 0.157 3.843 6 C -0.579 4.579 7 H 0.070 0.930 8 C -0.191 4.191 9 N -0.569 5.569 10 Si 0.793 3.207 11 H -0.192 1.192 12 H -0.194 1.194 13 H -0.208 1.208 14 C 0.400 3.600 15 O -0.520 6.520 16 N -0.394 5.394 17 C 0.099 3.901 18 C -0.100 4.100 19 C -0.205 4.205 20 C -0.245 4.245 21 C -0.093 4.093 22 O -0.086 6.086 23 H 0.077 0.923 24 H 0.089 0.911 25 H 0.084 0.916 26 H 0.077 0.923 27 H 0.066 0.934 28 H 0.095 0.905 29 H 0.104 0.896 30 H 0.043 0.957 31 H 0.016 0.984 32 H 0.076 0.924 33 H 0.244 0.756 34 H 0.110 0.890 35 H 0.088 0.912 36 H 0.175 0.825 37 H 0.191 0.809 38 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -12.984 -2.173 -17.955 22.264 hybrid contribution 0.200 0.827 0.577 1.027 sum -12.784 -1.347 -17.378 21.616 Atomic orbital electron populations 1.21652 0.92688 1.02678 1.02743 1.21922 0.97925 0.96060 1.01661 1.21689 0.78452 0.97669 1.03353 1.47403 1.07157 1.75608 1.04914 1.18628 0.90655 0.95904 0.79123 1.21757 1.36645 0.93105 1.06410 0.92991 1.25842 0.94926 1.01918 0.96404 1.70059 1.39021 1.32930 1.14856 0.85359 0.77838 0.79185 0.78341 1.19226 1.19385 1.20791 1.16056 0.84879 0.77940 0.81176 1.90847 1.14054 1.60163 1.86925 1.45125 1.10027 1.81040 1.03207 1.19265 0.90302 1.03544 0.76945 1.22049 1.03179 0.85071 0.99737 1.21983 1.00247 0.99717 0.98544 1.22197 1.04295 0.95356 1.02692 1.24953 0.94897 0.97018 0.92464 1.84047 1.48688 1.35216 1.40611 0.92267 0.91131 0.91576 0.92289 0.93363 0.90481 0.89570 0.95740 0.98431 0.92434 0.75600 0.88991 0.91220 0.82501 0.80864 0.74211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 9.91 71.98 0.71 -2.04 16 2 C -0.14 -3.77 6.26 30.59 0.19 -3.58 16 3 C 0.11 3.62 5.17 86.38 0.45 4.07 16 4 N -0.62 -27.51 2.46 -844.21 -2.07 -29.58 16 5 C 0.28 15.50 5.16 85.63 0.44 15.95 16 6 C -0.54 -31.85 9.39 25.60 0.24 -31.61 16 7 H 0.05 3.05 7.81 -2.91 -0.02 3.02 16 8 C 0.01 0.46 5.46 84.66 0.46 0.92 16 9 N -0.93 -56.95 13.29 21.45 0.28 -56.66 16 10 Si 0.97 45.61 29.54 68.60 2.03 47.63 16 11 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 12 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 13 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 14 C 0.70 31.27 8.28 179.05 1.48 32.75 16 15 O -0.64 -35.13 15.92 -3.98 -0.06 -35.19 16 16 N -0.73 -24.03 5.41 -482.29 -2.61 -26.64 16 17 C 0.22 6.46 6.20 85.63 0.53 6.99 16 18 C -0.05 -1.20 6.69 24.83 0.17 -1.03 16 19 C -0.18 -3.72 10.81 22.19 0.24 -3.48 16 20 C -0.23 -3.51 10.91 22.19 0.24 -3.26 16 21 C -0.03 -0.38 12.09 66.97 0.81 0.43 16 22 O -0.19 -4.20 10.65 -2.58 -0.03 -4.23 16 23 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 24 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.07 1.15 8.14 -2.39 -0.02 1.14 16 26 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.08 2.63 8.07 -2.39 -0.02 2.61 16 29 H 0.09 2.28 6.36 -2.39 -0.02 2.26 16 30 H 0.02 1.38 8.07 -2.39 -0.02 1.36 16 31 H 0.00 -0.16 7.42 -2.39 -0.02 -0.17 16 32 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 33 H 0.41 11.04 6.19 -92.71 -0.57 10.46 16 34 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 35 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.16 2.86 8.06 -2.91 -0.02 2.84 16 37 H 0.17 1.73 8.06 -2.91 -0.02 1.70 16 38 H 0.24 1.32 8.06 -2.91 -0.02 1.30 16 Total: -1.00 -76.59 328.32 3.98 -72.61 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: 0.48 Total: 15.96 kcal Atomic # 6 Polarization: 10.14 SS G_CDS: 5.97 Total: 16.11 kcal Atomic # 7 Polarization: -108.49 SS G_CDS: -4.40 Total: -112.89 kcal Atomic # 8 Polarization: -39.33 SS G_CDS: -0.09 Total: -39.42 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.63 kcal Total: -76.59 3.98 -72.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188157696.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.699 kcal (2) G-P(sol) polarization free energy of solvation -76.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds