Wall clock time and date at job start Mon Mar 30 2020 19:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47209 * 2 1 4 4 N 1.46503 * 109.46641 * 119.99436 * 2 1 3 5 5 C 1.36881 * 126.40274 * 300.02347 * 4 2 1 6 6 C 1.34666 * 106.82349 * 179.97438 * 5 4 2 7 7 N 1.34132 * 108.01652 * 359.77564 * 6 5 4 8 8 C 1.30506 * 109.25663 * 0.37415 * 7 6 5 9 9 C 1.50693 * 125.64640 * 179.88866 * 8 7 6 10 10 O 1.45198 * 109.47402 * 269.69160 * 9 8 7 11 11 C 1.34230 * 117.00173 * 180.02562 * 10 9 8 12 12 O 1.20822 * 120.00010 * 0.02562 * 11 10 9 13 13 C 1.50706 * 119.99763 * 179.97438 * 11 10 9 14 14 H 1.08996 * 109.46822 * 60.00506 * 13 11 10 15 15 C 1.52997 * 109.47238 * 299.99723 * 13 11 10 16 16 C 1.50708 * 109.46685 * 179.97438 * 13 11 10 17 17 H 1.07995 * 119.99755 * 0.02562 * 16 13 11 18 18 C 1.37873 * 119.99729 * 179.97438 * 16 13 11 19 19 N 1.31516 * 119.99909 * 0.02562 * 18 16 13 20 20 Si 1.86803 * 119.99980 * 179.97438 * 18 16 13 21 21 H 1.48500 * 109.46755 * 90.00221 * 20 18 16 22 22 H 1.48498 * 109.46866 * 210.00208 * 20 18 16 23 23 H 1.48496 * 109.47178 * 330.00271 * 20 18 16 24 24 H 1.09007 * 109.46709 * 60.00384 * 1 2 3 25 25 H 1.08994 * 109.47213 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47303 * 300.00760 * 1 2 3 27 27 H 1.08993 * 109.47479 * 239.99357 * 2 1 3 28 28 H 1.09003 * 109.46820 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.46884 * 299.99306 * 3 2 1 30 30 H 1.09002 * 109.47342 * 59.99908 * 3 2 1 31 31 H 1.08005 * 126.58664 * 0.02562 * 5 4 2 32 32 H 1.08002 * 125.99227 * 180.02562 * 6 5 4 33 33 H 1.09007 * 109.47172 * 149.69522 * 9 8 7 34 34 H 1.09003 * 109.47604 * 29.69628 * 9 8 7 35 35 H 1.09002 * 109.47153 * 180.02562 * 15 13 11 36 36 H 1.09001 * 109.46832 * 60.00314 * 15 13 11 37 37 H 1.09004 * 109.47261 * 300.00295 * 15 13 11 38 38 H 0.97002 * 119.99804 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6905 1.1963 5 6 1.7692 -0.3391 2.4956 6 6 2.4045 -1.2383 3.2711 7 7 3.0204 -2.1178 2.4673 8 6 2.7976 -1.7931 1.2231 9 6 3.3183 -2.5302 0.0163 10 8 4.6034 -1.9768 -0.3717 11 6 5.2066 -2.5258 -1.4377 12 8 4.6780 -3.4384 -2.0274 13 6 6.5425 -2.0033 -1.8997 14 1 7.2727 -2.1138 -1.0981 15 6 6.4114 -0.5247 -2.2701 16 6 6.9982 -2.7851 -3.1049 17 1 6.3818 -3.5804 -3.4972 18 6 8.2014 -2.4843 -3.7071 19 7 8.9516 -1.5155 -3.2296 20 14 8.7665 -3.4538 -5.2005 21 1 8.2678 -2.7964 -6.4351 22 1 10.2506 -3.4991 -5.2286 23 1 8.2305 -4.8366 -5.1248 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5140 0.8899 27 1 1.8934 -0.5139 -0.8898 28 1 3.1300 1.4424 0.0005 29 1 1.6768 1.9562 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.1764 0.4980 2.8338 32 1 2.4128 -1.2515 4.3510 33 1 2.6127 -2.4225 -0.8077 34 1 3.4357 -3.5865 0.2583 35 1 7.3776 -0.1468 -2.6047 36 1 6.0820 0.0405 -1.3982 37 1 5.6811 -0.4142 -3.0718 38 1 9.7980 -1.3036 -3.6535 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001518390208.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:26:16 Heat of formation + Delta-G solvation = -35.284220 kcal Electronic energy + Delta-G solvation = -20371.095366 eV Core-core repulsion = 17214.747216 eV Total energy + Delta-G solvation = -3156.348151 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -42.19839 -39.56091 -36.19587 -35.83292 -33.90686 -31.15295 -30.84387 -30.33202 -27.62872 -26.49618 -25.22425 -23.12763 -22.89918 -20.98080 -19.87429 -19.52045 -17.39413 -16.76569 -16.09537 -15.86271 -15.49919 -15.18893 -14.84516 -14.33106 -14.12629 -13.87194 -13.29940 -13.21207 -12.88805 -12.63594 -12.54201 -12.43968 -11.97838 -11.71768 -11.55804 -11.36395 -11.07448 -10.80812 -10.71203 -10.39185 -10.15874 -10.06999 -9.94348 -9.64380 -9.25021 -9.06274 -8.48679 -8.39891 -6.11362 -4.17094 1.87313 2.62818 2.98485 3.25293 3.30173 3.35816 3.42156 3.74842 4.27851 4.38709 4.51360 4.60225 4.62611 4.77794 5.14284 5.16876 5.22045 5.24010 5.36904 5.39090 5.45524 5.54719 5.65908 5.77617 5.87160 6.08397 6.28417 6.63130 6.74015 6.82235 6.84614 7.07661 7.17182 7.41320 7.71677 7.92717 8.10763 8.11859 8.79279 8.91921 9.48548 10.96035 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.030132 B = 0.004381 C = 0.004237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.036046 B = 6389.156470 C = 6607.249815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.120 3.880 3 C -0.161 4.161 4 N -0.439 5.439 5 C -0.049 4.049 6 C -0.030 4.030 7 N -0.472 5.472 8 C 0.209 3.791 9 C 0.148 3.852 10 O -0.360 6.360 11 C 0.468 3.532 12 O -0.515 6.515 13 C 0.059 3.941 14 H 0.066 0.934 15 C -0.132 4.132 16 C -0.513 4.513 17 H 0.076 0.924 18 C 0.062 3.938 19 N -0.892 5.892 20 Si 0.905 3.095 21 H -0.279 1.279 22 H -0.285 1.285 23 H -0.272 1.272 24 H 0.078 0.922 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.104 0.896 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.063 0.937 31 H 0.172 0.828 32 H 0.170 0.830 33 H 0.077 0.923 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.022 0.978 37 H 0.030 0.970 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.766 6.971 7.910 18.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.017 3.983 3 C -0.219 4.219 4 N -0.123 5.123 5 C -0.183 4.183 6 C -0.179 4.179 7 N -0.192 5.192 8 C -0.053 4.053 9 C 0.072 3.928 10 O -0.278 6.278 11 C 0.312 3.688 12 O -0.402 6.402 13 C 0.040 3.960 14 H 0.084 0.916 15 C -0.190 4.190 16 C -0.551 4.551 17 H 0.094 0.906 18 C -0.140 4.140 19 N -0.530 5.530 20 Si 0.733 3.267 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.196 1.196 24 H 0.097 0.903 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.122 0.878 28 H 0.090 0.910 29 H 0.096 0.904 30 H 0.082 0.918 31 H 0.189 0.811 32 H 0.188 0.812 33 H 0.095 0.905 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.041 0.959 37 H 0.050 0.950 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.353 6.172 7.808 18.297 hybrid contribution -0.311 0.233 -0.911 0.991 sum -15.664 6.405 6.896 18.274 Atomic orbital electron populations 1.22168 0.93138 1.03199 1.03327 1.21570 0.95398 0.94664 0.86631 1.22150 1.02989 0.93677 1.03061 1.45601 1.37901 1.21955 1.06827 1.22580 1.08373 1.04309 0.83046 1.22302 1.01392 0.94556 0.99654 1.70247 1.21991 1.27494 0.99440 1.22669 0.98073 0.89933 0.94603 1.20747 0.84742 0.96872 0.90429 1.86711 1.32669 1.60380 1.47999 1.25438 0.88264 0.79878 0.75195 1.90506 1.65593 1.28983 1.55125 1.18787 0.84205 0.94987 0.98067 0.91642 1.21728 1.03703 0.95493 0.98087 1.21128 1.04692 1.17819 1.11427 0.90579 1.24938 0.96098 0.95281 0.97658 1.69882 1.12707 1.29580 1.40861 0.86369 0.77555 0.80517 0.82305 1.20553 1.21116 1.19629 0.90301 0.91735 0.91685 0.87810 0.91028 0.90361 0.91825 0.81063 0.81240 0.90463 0.88503 0.88499 0.95929 0.95046 0.92673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.19 9.25 37.16 0.34 -0.85 16 2 C 0.12 1.21 3.52 -67.93 -0.24 0.97 16 3 C -0.16 -1.44 9.25 37.16 0.34 -1.10 16 4 N -0.44 -5.61 2.61 -106.83 -0.28 -5.89 16 5 C -0.05 -0.56 10.60 -16.56 -0.18 -0.73 16 6 C -0.03 -0.40 11.87 -17.81 -0.21 -0.61 16 7 N -0.47 -8.02 11.25 -10.82 -0.12 -8.14 16 8 C 0.21 3.36 7.54 -155.41 -1.17 2.19 16 9 C 0.15 2.54 5.60 36.00 0.20 2.74 16 10 O -0.36 -7.43 10.11 -39.26 -0.40 -7.83 16 11 C 0.47 11.01 7.25 36.01 0.26 11.27 16 12 O -0.52 -12.96 15.21 -18.75 -0.29 -13.25 16 13 C 0.06 1.49 2.74 -92.92 -0.25 1.24 16 14 H 0.07 1.75 8.14 -51.93 -0.42 1.33 16 15 C -0.13 -3.10 8.90 37.16 0.33 -2.77 16 16 C -0.51 -14.34 8.38 -34.44 -0.29 -14.62 16 17 H 0.08 2.21 6.76 -52.49 -0.35 1.85 16 18 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 19 N -0.89 -24.78 11.32 55.43 0.63 -24.16 16 20 Si 0.91 21.38 29.54 -169.99 -5.02 16.36 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 23 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 24 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.43 7.95 -51.93 -0.41 0.01 16 27 H 0.10 1.14 6.67 -51.93 -0.35 0.80 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.49 7.95 -51.93 -0.41 0.08 16 31 H 0.17 1.30 8.06 -52.48 -0.42 0.88 16 32 H 0.17 1.74 8.06 -52.49 -0.42 1.31 16 33 H 0.08 1.18 7.07 -51.92 -0.37 0.81 16 34 H 0.10 1.68 8.13 -51.93 -0.42 1.25 16 35 H 0.10 2.46 6.07 -51.93 -0.32 2.14 16 36 H 0.02 0.46 8.11 -51.93 -0.42 0.04 16 37 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 323.56 15.07 4.88 4.88 Total: -1.00 -31.89 323.56 -7.12 -39.01 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -5.57 Total: -0.30 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: -0.96 Total: -0.68 kcal Atomic # 7 Polarization: -38.42 SS G_CDS: 0.23 Total: -38.19 kcal Atomic # 8 Polarization: -20.40 SS G_CDS: -0.68 Total: -21.08 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.89 -7.12 -39.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001518390208.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.728 kcal (2) G-P(sol) polarization free energy of solvation -31.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds