Wall clock time and date at job start Mon Mar 30 2020 19:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47209 * 2 1 4 4 N 1.46503 * 109.46641 * 119.99436 * 2 1 3 5 5 C 1.36881 * 126.40274 * 300.02347 * 4 2 1 6 6 C 1.34666 * 106.82349 * 179.97438 * 5 4 2 7 7 N 1.34132 * 108.01652 * 359.77564 * 6 5 4 8 8 C 1.30506 * 109.25663 * 0.37415 * 7 6 5 9 9 C 1.50693 * 125.64640 * 179.88866 * 8 7 6 10 10 O 1.45198 * 109.47402 * 269.69160 * 9 8 7 11 11 C 1.34230 * 117.00173 * 180.02562 * 10 9 8 12 12 O 1.20822 * 120.00010 * 0.02562 * 11 10 9 13 13 C 1.50706 * 119.99763 * 179.97438 * 11 10 9 14 14 H 1.08996 * 109.46822 * 60.00506 * 13 11 10 15 15 C 1.52997 * 109.47238 * 299.99723 * 13 11 10 16 16 C 1.50708 * 109.46685 * 179.97438 * 13 11 10 17 17 H 1.07995 * 119.99755 * 0.02562 * 16 13 11 18 18 C 1.37873 * 119.99729 * 179.97438 * 16 13 11 19 19 N 1.31516 * 119.99909 * 0.02562 * 18 16 13 20 20 Si 1.86803 * 119.99980 * 179.97438 * 18 16 13 21 21 H 1.48500 * 109.46755 * 90.00221 * 20 18 16 22 22 H 1.48498 * 109.46866 * 210.00208 * 20 18 16 23 23 H 1.48496 * 109.47178 * 330.00271 * 20 18 16 24 24 H 1.09007 * 109.46709 * 60.00384 * 1 2 3 25 25 H 1.08994 * 109.47213 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47303 * 300.00760 * 1 2 3 27 27 H 1.08993 * 109.47479 * 239.99357 * 2 1 3 28 28 H 1.09003 * 109.46820 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.46884 * 299.99306 * 3 2 1 30 30 H 1.09002 * 109.47342 * 59.99908 * 3 2 1 31 31 H 1.08005 * 126.58664 * 0.02562 * 5 4 2 32 32 H 1.08002 * 125.99227 * 180.02562 * 6 5 4 33 33 H 1.09007 * 109.47172 * 149.69522 * 9 8 7 34 34 H 1.09003 * 109.47604 * 29.69628 * 9 8 7 35 35 H 1.09002 * 109.47153 * 180.02562 * 15 13 11 36 36 H 1.09001 * 109.46832 * 60.00314 * 15 13 11 37 37 H 1.09004 * 109.47261 * 300.00295 * 15 13 11 38 38 H 0.97002 * 119.99804 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6905 1.1963 5 6 1.7692 -0.3391 2.4956 6 6 2.4045 -1.2383 3.2711 7 7 3.0204 -2.1178 2.4673 8 6 2.7976 -1.7931 1.2231 9 6 3.3183 -2.5302 0.0163 10 8 4.6034 -1.9768 -0.3717 11 6 5.2066 -2.5258 -1.4377 12 8 4.6780 -3.4384 -2.0274 13 6 6.5425 -2.0033 -1.8997 14 1 7.2727 -2.1138 -1.0981 15 6 6.4114 -0.5247 -2.2701 16 6 6.9982 -2.7851 -3.1049 17 1 6.3818 -3.5804 -3.4972 18 6 8.2014 -2.4843 -3.7071 19 7 8.9516 -1.5155 -3.2296 20 14 8.7665 -3.4538 -5.2005 21 1 8.2678 -2.7964 -6.4351 22 1 10.2506 -3.4991 -5.2286 23 1 8.2305 -4.8366 -5.1248 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5140 0.8899 27 1 1.8934 -0.5139 -0.8898 28 1 3.1300 1.4424 0.0005 29 1 1.6768 1.9562 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.1764 0.4980 2.8338 32 1 2.4128 -1.2515 4.3510 33 1 2.6127 -2.4225 -0.8077 34 1 3.4357 -3.5865 0.2583 35 1 7.3776 -0.1468 -2.6047 36 1 6.0820 0.0405 -1.3982 37 1 5.6811 -0.4142 -3.0718 38 1 9.7980 -1.3036 -3.6535 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001518390208.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:26:14 Heat of formation + Delta-G solvation = -52.963123 kcal Electronic energy + Delta-G solvation = -20371.861981 eV Core-core repulsion = 17214.747216 eV Total energy + Delta-G solvation = -3157.114765 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -43.23701 -41.36585 -37.60809 -37.03350 -35.94992 -32.88261 -31.86516 -31.77463 -28.25255 -27.77524 -27.28853 -24.88342 -23.89337 -22.02446 -21.70958 -20.57151 -18.72530 -18.35733 -18.05874 -17.54413 -17.12994 -16.34459 -16.09153 -15.71562 -15.23328 -14.90057 -14.73646 -14.59732 -14.12651 -14.04808 -13.66563 -13.37500 -13.19146 -13.16362 -12.98872 -12.77329 -12.62378 -12.44732 -12.32889 -12.13710 -12.06443 -11.78708 -11.16457 -11.13279 -11.03597 -10.66452 -10.54877 -9.47072 -8.20670 -6.34548 0.74804 1.36089 1.43070 1.43938 1.54980 1.64559 1.83384 2.32150 2.47591 3.09486 3.24633 3.52234 3.61901 3.89122 3.94693 4.06096 4.13611 4.32711 4.47928 4.58313 4.62603 4.65660 4.73689 4.76361 4.85608 4.86655 4.94241 5.07488 5.19507 5.29295 5.34222 5.40698 5.66687 5.77865 5.85966 6.07301 6.11042 6.71914 6.95626 7.04594 7.34509 8.85915 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.030132 B = 0.004381 C = 0.004237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.036046 B = 6389.156470 C = 6607.249815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.111 3.889 3 C -0.157 4.157 4 N -0.433 5.433 5 C -0.023 4.023 6 C -0.055 4.055 7 N -0.509 5.509 8 C 0.173 3.827 9 C 0.150 3.850 10 O -0.361 6.361 11 C 0.477 3.523 12 O -0.536 6.536 13 C 0.051 3.949 14 H 0.047 0.953 15 C -0.117 4.117 16 C -0.538 4.538 17 H 0.059 0.941 18 C 0.023 3.977 19 N -0.910 5.910 20 Si 0.966 3.034 21 H -0.270 1.270 22 H -0.275 1.275 23 H -0.276 1.276 24 H 0.098 0.902 25 H 0.054 0.946 26 H 0.080 0.920 27 H 0.088 0.912 28 H 0.043 0.957 29 H 0.098 0.902 30 H 0.082 0.918 31 H 0.217 0.783 32 H 0.194 0.806 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.043 0.957 37 H 0.034 0.966 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.359 8.516 8.094 20.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.009 3.991 3 C -0.214 4.214 4 N -0.116 5.116 5 C -0.158 4.158 6 C -0.203 4.203 7 N -0.231 5.231 8 C -0.088 4.088 9 C 0.074 3.926 10 O -0.277 6.277 11 C 0.322 3.678 12 O -0.425 6.425 13 C 0.032 3.968 14 H 0.064 0.936 15 C -0.175 4.175 16 C -0.576 4.576 17 H 0.077 0.923 18 C -0.177 4.177 19 N -0.548 5.548 20 Si 0.790 3.210 21 H -0.195 1.195 22 H -0.200 1.200 23 H -0.200 1.200 24 H 0.116 0.884 25 H 0.073 0.927 26 H 0.099 0.901 27 H 0.106 0.894 28 H 0.062 0.938 29 H 0.116 0.884 30 H 0.101 0.899 31 H 0.234 0.766 32 H 0.211 0.789 33 H 0.111 0.889 34 H 0.106 0.894 35 H 0.097 0.903 36 H 0.062 0.938 37 H 0.053 0.947 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -16.955 7.737 7.992 20.278 hybrid contribution 0.109 -0.184 -0.842 0.869 sum -16.846 7.553 7.150 19.798 Atomic orbital electron populations 1.22140 0.90580 1.03176 1.05112 1.21851 0.97341 0.94806 0.85071 1.22143 1.01154 0.93083 1.05030 1.45816 1.36658 1.20846 1.08285 1.23278 1.06562 1.04083 0.81863 1.22854 1.01900 0.94639 1.00914 1.70150 1.23219 1.29290 1.00401 1.22270 1.00584 0.92069 0.93853 1.20870 0.83164 0.96658 0.91863 1.86648 1.34500 1.60049 1.46507 1.24895 0.87852 0.79409 0.75626 1.90483 1.66181 1.29803 1.56071 1.18708 0.85042 0.96161 0.96923 0.93570 1.21534 1.02746 0.94259 0.98965 1.21241 1.05365 1.18252 1.12757 0.92312 1.25658 0.95888 0.96080 1.00112 1.69968 1.12924 1.30168 1.41744 0.85438 0.77459 0.78861 0.79215 1.19511 1.20035 1.20048 0.88357 0.92656 0.90058 0.89423 0.93807 0.88371 0.89946 0.76623 0.78875 0.88861 0.89393 0.90338 0.93824 0.94699 0.92229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.25 71.98 0.67 -1.11 16 2 C 0.11 2.01 3.52 44.99 0.16 2.17 16 3 C -0.16 -2.39 9.25 71.98 0.67 -1.73 16 4 N -0.43 -10.33 2.61 -491.91 -1.28 -11.62 16 5 C -0.02 -0.46 10.60 83.09 0.88 0.42 16 6 C -0.05 -1.36 11.87 83.52 0.99 -0.37 16 7 N -0.51 -17.26 11.25 -188.13 -2.12 -19.38 16 8 C 0.17 5.54 7.54 138.12 1.04 6.58 16 9 C 0.15 5.25 5.60 71.23 0.40 5.65 16 10 O -0.36 -15.20 10.11 -51.41 -0.52 -15.72 16 11 C 0.48 23.03 7.25 71.24 0.52 23.55 16 12 O -0.54 -27.71 15.21 21.98 0.33 -27.37 16 13 C 0.05 2.66 2.74 -12.28 -0.03 2.62 16 14 H 0.05 2.57 8.14 -2.39 -0.02 2.55 16 15 C -0.12 -5.54 8.90 71.98 0.64 -4.90 16 16 C -0.54 -30.75 8.38 25.60 0.21 -30.53 16 17 H 0.06 3.50 6.76 -2.91 -0.02 3.48 16 18 C 0.02 1.24 5.30 84.65 0.45 1.69 16 19 N -0.91 -50.77 11.32 21.45 0.24 -50.52 16 20 Si 0.97 43.83 29.54 68.60 2.03 45.86 16 21 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 22 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 23 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 24 H 0.10 0.79 8.14 -2.38 -0.02 0.77 16 25 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.08 0.70 7.95 -2.39 -0.02 0.69 16 27 H 0.09 1.86 6.67 -2.39 -0.02 1.85 16 28 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.08 0.95 7.95 -2.39 -0.02 0.93 16 31 H 0.22 2.14 8.06 -2.91 -0.02 2.12 16 32 H 0.19 3.55 8.06 -2.91 -0.02 3.53 16 33 H 0.09 2.90 7.07 -2.38 -0.02 2.88 16 34 H 0.09 3.19 8.13 -2.39 -0.02 3.17 16 35 H 0.08 4.02 6.07 -2.39 -0.01 4.00 16 36 H 0.04 1.82 8.11 -2.39 -0.02 1.80 16 37 H 0.03 1.57 8.14 -2.38 -0.02 1.55 16 38 H 0.27 14.08 8.31 -92.71 -0.77 13.31 16 Total: -1.00 -69.87 323.56 6.32 -63.55 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: 1.04 Total: 11.14 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: 6.59 Total: 4.06 kcal Atomic # 7 Polarization: -78.36 SS G_CDS: -3.16 Total: -81.52 kcal Atomic # 8 Polarization: -42.90 SS G_CDS: -0.19 Total: -43.09 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -69.87 6.32 -63.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001518390208.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.591 kcal (2) G-P(sol) polarization free energy of solvation -69.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds