Wall clock time and date at job start Mon Mar 30 2020 19:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47142 * 2 1 4 4 C 1.50710 * 109.46940 * 240.00783 * 2 1 3 5 5 H 1.08000 * 119.99949 * 239.99871 * 4 2 1 6 6 C 1.37878 * 119.99836 * 60.00027 * 4 2 1 7 7 N 1.31516 * 119.99920 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99965 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.47064 * 59.99682 * 8 6 4 10 10 H 1.48493 * 109.47246 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.46941 * 299.99865 * 8 6 4 12 12 C 1.50697 * 109.47530 * 120.00782 * 2 1 3 13 13 O 1.21278 * 120.00124 * 94.78016 * 12 2 1 14 14 N 1.34773 * 119.99809 * 274.78117 * 12 2 1 15 15 C 1.46889 * 120.49085 * 4.95027 * 14 12 2 16 16 C 1.53766 * 108.52765 * 124.44209 * 15 14 12 17 17 C 1.52718 * 109.07243 * 52.69115 * 16 15 14 18 18 C 1.53325 * 113.61116 * 170.83133 * 17 16 15 19 19 C 1.51591 * 86.42687 * 245.58744 * 18 17 16 20 20 O 1.21277 * 134.17461 * 180.02562 * 19 18 17 21 21 N 1.35946 * 91.65381 * 0.02562 * 19 18 17 22 22 C 1.52710 * 113.09139 * 302.25856 * 17 16 15 23 23 C 1.46890 * 120.48320 * 185.23186 * 14 12 2 24 24 H 1.09003 * 109.47400 * 54.85389 * 1 2 3 25 25 H 1.08999 * 109.47283 * 174.85974 * 1 2 3 26 26 H 1.09003 * 109.47066 * 294.85560 * 1 2 3 27 27 H 0.97007 * 119.99718 * 180.02562 * 7 6 4 28 28 H 1.08993 * 109.58893 * 244.27030 * 15 14 12 29 29 H 1.09007 * 109.58440 * 4.70107 * 15 14 12 30 30 H 1.09003 * 109.65924 * 292.74970 * 16 15 14 31 31 H 1.09003 * 109.45381 * 172.51171 * 16 15 14 32 32 H 1.09005 * 113.71764 * 359.96805 * 18 17 16 33 33 H 1.08999 * 113.71984 * 131.10242 * 18 17 16 34 34 H 0.96998 * 132.47780 * 180.02562 * 21 19 18 35 35 H 1.09007 * 109.52733 * 297.71619 * 22 17 16 36 36 H 1.08995 * 109.52756 * 177.51959 * 22 17 16 37 37 H 1.08997 * 109.59216 * 355.30438 * 23 14 12 38 38 H 1.09005 * 109.58707 * 115.58937 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2307 5 1 2.6532 -1.5884 -1.1317 6 6 1.6991 -0.2390 -2.4828 7 7 0.9426 0.8300 -2.6033 8 14 2.3211 -1.1198 -4.0082 9 1 1.8255 -2.5197 -4.0081 10 1 1.8257 -0.4199 -5.2205 11 1 3.8061 -1.1204 -4.0085 12 6 2.0324 -0.7105 1.2303 13 8 2.3171 -1.8882 1.1767 14 7 2.1653 -0.0373 2.3902 15 6 1.7225 1.3593 2.4963 16 6 0.7246 1.4683 3.6611 17 6 1.3543 0.8670 4.9157 18 6 0.5419 1.1184 6.1915 19 6 1.7133 1.9598 6.6582 20 8 1.9467 2.6015 7.6604 21 7 2.3993 1.7117 5.5110 22 6 1.7749 -0.5899 4.7353 23 6 2.7607 -0.6874 3.5651 24 1 -0.3634 0.5916 -0.8403 25 1 -0.3634 -1.0235 -0.0921 26 1 -0.3633 0.4320 0.9325 27 1 0.7079 1.1613 -3.4843 28 1 2.5822 2.0017 2.6867 29 1 1.2372 1.6603 1.5678 30 1 -0.1874 0.9246 3.4147 31 1 0.4877 2.5173 3.8391 32 1 -0.3705 1.6911 6.0246 33 1 0.3773 0.2225 6.7901 34 1 3.2726 1.9930 5.1961 35 1 0.8963 -1.1992 4.5232 36 1 2.2549 -0.9461 5.6468 37 1 2.9599 -1.7354 3.3413 38 1 3.6927 -0.1862 3.8270 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001542506746.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:26:34 Heat of formation + Delta-G solvation = -73.220861 kcal Electronic energy + Delta-G solvation = -20878.953218 eV Core-core repulsion = 17720.960011 eV Total energy + Delta-G solvation = -3157.993207 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 3.00 seconds Orbital eigenvalues (eV) -42.22273 -40.64057 -38.45805 -36.53622 -35.82884 -33.06519 -31.87931 -31.55026 -29.28077 -27.23975 -25.64742 -24.62615 -23.52833 -21.82718 -20.57872 -19.76617 -18.42231 -18.07434 -17.55349 -17.02710 -16.85096 -16.73010 -16.16606 -15.88113 -15.04390 -14.83410 -14.62561 -14.39739 -14.18458 -14.13288 -13.60828 -13.30405 -12.99286 -12.83428 -12.69591 -12.56802 -12.42909 -12.28538 -12.21364 -12.03958 -11.91558 -11.69241 -11.04548 -11.03705 -10.58515 -10.27649 -10.12433 -9.52751 -8.15125 -6.24664 1.41555 1.42759 1.49782 1.50898 1.91707 2.17631 2.31516 2.46632 3.10511 3.15049 3.49282 3.67217 3.72219 4.03892 4.15926 4.30018 4.42710 4.48015 4.64712 4.72620 4.76829 4.84804 4.85992 4.93849 4.97698 5.03888 5.06414 5.13891 5.19168 5.47203 5.48338 5.69598 5.78346 5.95080 5.97418 6.20627 6.59166 6.81023 7.36315 7.39940 7.51831 8.90453 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.043457 B = 0.004483 C = 0.004302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.159796 B = 6244.256642 C = 6507.186930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.029 3.971 3 H 0.043 0.957 4 C -0.531 4.531 5 H 0.041 0.959 6 C 0.024 3.976 7 N -0.907 5.907 8 Si 0.951 3.049 9 H -0.279 1.279 10 H -0.274 1.274 11 H -0.276 1.276 12 C 0.523 3.477 13 O -0.590 6.590 14 N -0.617 5.617 15 C 0.102 3.898 16 C -0.123 4.123 17 C 0.168 3.832 18 C -0.154 4.154 19 C 0.523 3.477 20 O -0.563 6.563 21 N -0.730 5.730 22 C -0.119 4.119 23 C 0.107 3.893 24 H 0.070 0.930 25 H 0.017 0.983 26 H 0.052 0.948 27 H 0.265 0.735 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.095 0.905 31 H 0.103 0.897 32 H 0.136 0.864 33 H 0.135 0.865 34 H 0.402 0.598 35 H 0.089 0.911 36 H 0.099 0.901 37 H 0.070 0.930 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.503 3.020 14.981 15.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.008 3.992 3 H 0.061 0.939 4 C -0.570 4.570 5 H 0.060 0.940 6 C -0.175 4.175 7 N -0.546 5.546 8 Si 0.777 3.223 9 H -0.204 1.204 10 H -0.199 1.199 11 H -0.201 1.201 12 C 0.314 3.686 13 O -0.470 6.470 14 N -0.350 5.350 15 C -0.020 4.020 16 C -0.162 4.162 17 C 0.082 3.918 18 C -0.194 4.194 19 C 0.310 3.690 20 O -0.440 6.440 21 N -0.388 5.388 22 C -0.158 4.158 23 C -0.016 4.016 24 H 0.089 0.911 25 H 0.036 0.964 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.092 0.908 29 H 0.106 0.894 30 H 0.113 0.887 31 H 0.121 0.879 32 H 0.154 0.846 33 H 0.153 0.847 34 H 0.243 0.757 35 H 0.108 0.892 36 H 0.117 0.883 37 H 0.088 0.912 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.291 2.871 15.341 15.775 hybrid contribution 1.109 -0.345 -1.357 1.786 sum -1.182 2.526 13.984 14.260 Atomic orbital electron populations 1.21515 0.95026 0.99635 1.01040 1.18795 0.95224 0.95911 0.89318 0.93927 1.21209 1.31972 1.12394 0.91377 0.94042 1.25517 0.95154 0.95681 1.01173 1.69929 1.36918 1.23375 1.24386 0.85724 0.78711 0.78746 0.79141 1.20441 1.19888 1.20117 1.21628 0.75211 0.86628 0.85144 1.90498 1.52467 1.18455 1.85582 1.48241 1.62238 1.13936 1.10629 1.21979 0.98518 0.80945 1.00563 1.22173 0.98666 1.03332 0.92053 1.21396 0.85492 0.90604 0.94328 1.24024 0.98734 1.02006 0.94593 1.22625 0.86609 0.78780 0.80967 1.90734 1.78440 1.45202 1.29664 1.48924 1.19951 1.51100 1.18870 1.22018 1.00630 0.94669 0.98450 1.21566 0.96238 0.98918 0.84862 0.91105 0.96393 0.92944 0.92549 0.90783 0.89407 0.88700 0.87893 0.84568 0.84736 0.75668 0.89220 0.88288 0.91162 0.91016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.04 8.58 71.98 0.62 -4.42 16 2 C 0.03 1.38 1.77 -12.29 -0.02 1.36 16 3 H 0.04 2.07 6.69 -2.39 -0.02 2.05 16 4 C -0.53 -30.06 8.33 25.60 0.21 -29.84 16 5 H 0.04 2.52 7.03 -2.91 -0.02 2.50 16 6 C 0.02 1.34 5.30 84.65 0.45 1.79 16 7 N -0.91 -49.36 11.38 21.45 0.24 -49.12 16 8 Si 0.95 43.98 29.54 68.60 2.03 46.01 16 9 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 10 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 11 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 12 C 0.52 22.94 6.79 87.66 0.59 23.54 16 13 O -0.59 -30.46 15.22 -3.02 -0.05 -30.51 16 14 N -0.62 -19.30 2.93 -817.73 -2.40 -21.70 16 15 C 0.10 2.47 5.94 86.56 0.51 2.99 16 16 C -0.12 -2.01 5.47 30.76 0.17 -1.84 16 17 C 0.17 2.46 1.05 3.22 0.00 2.46 16 18 C -0.15 -1.79 7.54 30.25 0.23 -1.56 16 19 C 0.52 10.35 9.85 87.54 0.86 11.22 16 20 O -0.56 -16.47 18.03 -3.02 -0.05 -16.53 16 21 N -0.73 -11.86 7.00 -437.35 -3.06 -14.92 16 22 C -0.12 -2.00 5.46 30.61 0.17 -1.83 16 23 C 0.11 2.68 6.44 86.41 0.56 3.24 16 24 H 0.07 3.42 6.22 -2.39 -0.01 3.41 16 25 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.05 1.84 7.22 -2.39 -0.02 1.82 16 27 H 0.27 13.73 8.31 -92.70 -0.77 12.96 16 28 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.09 2.48 4.88 -2.38 -0.01 2.47 16 30 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.14 1.09 8.00 -2.38 -0.02 1.07 16 33 H 0.13 1.09 8.00 -2.39 -0.02 1.07 16 34 H 0.40 6.19 8.96 -92.71 -0.83 5.36 16 35 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 36 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.07 2.15 6.98 -2.39 -0.02 2.13 16 38 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 Total: -1.00 -72.03 307.21 1.31 -70.73 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: 0.25 Total: 8.96 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: 4.35 Total: 7.08 kcal Atomic # 7 Polarization: -80.52 SS G_CDS: -5.22 Total: -85.74 kcal Atomic # 8 Polarization: -46.93 SS G_CDS: -0.10 Total: -47.03 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -72.03 1.31 -70.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001542506746.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.495 kcal (2) G-P(sol) polarization free energy of solvation -72.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.00 seconds