Wall clock time and date at job start Mon Mar 30 2020 19:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30858 * 125.41899 * 2 1 4 4 C 1.33314 * 109.68397 * 179.86687 * 3 2 1 5 5 C 1.50701 * 126.10462 * 180.14213 * 4 3 2 6 6 C 1.36657 * 107.78768 * 0.39373 * 4 3 2 7 7 C 1.46763 * 126.84575 * 179.80041 * 6 4 3 8 8 O 1.21682 * 120.00133 * 359.97438 * 7 6 4 9 9 N 1.34782 * 120.00343 * 179.97438 * 7 6 4 10 10 C 1.46492 * 120.00341 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.47358 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.47356 * 180.02562 * 11 10 9 13 13 N 1.46501 * 109.47384 * 180.02562 * 12 11 10 14 14 C 1.36940 * 120.00661 * 180.02562 * 13 12 11 15 15 H 1.08004 * 119.98999 * 359.97438 * 14 13 12 16 16 C 1.38806 * 120.00169 * 180.02562 * 14 13 12 17 17 N 1.31621 * 120.00402 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99799 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46596 * 89.99669 * 18 16 14 20 20 H 1.48496 * 109.47184 * 209.99693 * 18 16 14 21 21 H 1.48500 * 109.47189 * 330.00099 * 18 16 14 22 22 N 1.34497 * 125.41767 * 180.31164 * 2 1 3 23 23 H 0.97005 * 126.46977 * 359.97438 * 22 2 1 24 24 H 1.09002 * 109.47152 * 269.69073 * 1 2 3 25 25 H 1.09001 * 109.46980 * 149.69173 * 1 2 3 26 26 H 1.09004 * 109.47113 * 29.69154 * 1 2 3 27 27 H 1.08999 * 109.46957 * 270.29896 * 5 4 3 28 28 H 1.08999 * 109.47418 * 30.29959 * 5 4 3 29 29 H 1.09004 * 109.47031 * 150.30251 * 5 4 3 30 30 H 0.97005 * 119.99550 * 359.97438 * 9 7 6 31 31 H 1.09003 * 109.47479 * 299.99917 * 10 9 7 32 32 H 1.09001 * 109.47374 * 60.00321 * 10 9 7 33 33 H 1.09005 * 109.47304 * 300.00547 * 11 10 9 34 34 H 1.09000 * 109.47238 * 60.00199 * 11 10 9 35 35 H 1.09003 * 109.47349 * 299.99916 * 12 11 10 36 36 H 1.09001 * 109.47505 * 60.00321 * 12 11 10 37 37 H 0.97010 * 119.99765 * 359.97438 * 13 12 11 38 38 H 0.96995 * 120.00162 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5486 0.7049 0.0029 5 6 4.7335 1.6360 0.0069 6 6 3.5976 -0.6608 -0.0041 7 6 4.8028 -1.4982 -0.0081 8 8 5.9038 -0.9800 -0.0056 9 7 4.6903 -2.8413 -0.0145 10 6 5.8934 -3.6772 -0.0190 11 6 5.4892 -5.1528 -0.0253 12 6 6.7456 -6.0258 -0.0294 13 7 6.3586 -7.4387 -0.0360 14 6 7.3214 -8.4125 -0.0401 15 1 8.3661 -8.1387 -0.0388 16 6 6.9546 -9.7512 -0.0469 17 7 5.6813 -10.0848 -0.0490 18 14 8.2681 -11.0795 -0.0531 19 1 8.6156 -11.4384 1.3454 20 1 7.7542 -12.2805 -0.7593 21 1 9.4785 -10.5754 -0.7502 22 7 2.2865 -1.0961 -0.0060 23 1 1.9849 -2.0180 -0.0106 24 1 -0.3633 -0.0055 1.0277 25 1 -0.3633 -0.8872 -0.5186 26 1 -0.3633 0.8928 -0.5091 27 1 5.0185 1.8658 -1.0198 28 1 4.4697 2.5576 0.5257 29 1 5.5695 1.1580 0.5177 30 1 3.8126 -3.2544 -0.0161 31 1 6.4846 -3.4583 -0.9082 32 1 6.4853 -3.4669 0.8718 33 1 4.8981 -5.3715 0.8641 34 1 4.8970 -5.3636 -0.9158 35 1 7.3370 -5.8073 -0.9186 36 1 7.3374 -5.8151 0.8614 37 1 5.4201 -7.6846 -0.0368 38 1 5.4250 -11.0203 -0.0534 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166886750.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:22:19 Heat of formation + Delta-G solvation = -11.909983 kcal Electronic energy + Delta-G solvation = -19103.113112 eV Core-core repulsion = 15980.071295 eV Total energy + Delta-G solvation = -3123.041817 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.148 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.34367 -40.47364 -37.56802 -36.06953 -34.50895 -33.80728 -33.09977 -31.27480 -30.08314 -28.01323 -26.59244 -24.54682 -22.80753 -22.67414 -21.99109 -20.91583 -19.56661 -19.02728 -17.25893 -17.13127 -16.92890 -16.52920 -16.51537 -15.42726 -15.41193 -15.30531 -14.87940 -14.71362 -14.10652 -13.97788 -13.84667 -13.33096 -13.30167 -13.23714 -13.05593 -12.83253 -12.62355 -12.46323 -12.10567 -12.08085 -11.81677 -11.57150 -11.07091 -10.98602 -10.96129 -10.30930 -9.42527 -9.03568 -7.98410 -5.27481 0.16641 1.47318 1.48617 1.57233 1.71023 1.77016 2.05038 2.17499 2.54986 3.29305 3.35829 3.69589 3.73723 3.96104 4.04935 4.10930 4.24245 4.41303 4.53787 4.68181 4.69485 4.70235 4.74265 4.79693 4.85501 4.97035 5.03299 5.13670 5.21648 5.28610 5.31023 5.47703 5.53157 6.23000 6.25029 6.37215 6.86453 7.00777 7.31241 8.05558 8.29205 9.25104 Molecular weight = 266.15amu Principal moments of inertia in cm(-1) A = 0.037539 B = 0.002796 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.703840 B =10012.431758 C =10721.781620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.253 3.747 3 N -0.529 5.529 4 C 0.081 3.919 5 C -0.075 4.075 6 C -0.110 4.110 7 C 0.594 3.406 8 O -0.558 6.558 9 N -0.714 5.714 10 C 0.134 3.866 11 C -0.118 4.118 12 C 0.152 3.848 13 N -0.747 5.747 14 C -0.250 4.250 15 H 0.075 0.925 16 C -0.074 4.074 17 N -0.968 5.968 18 Si 0.974 3.026 19 H -0.286 1.286 20 H -0.293 1.293 21 H -0.270 1.270 22 N -0.540 5.540 23 H 0.438 0.562 24 H 0.102 0.898 25 H 0.105 0.895 26 H 0.098 0.902 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.409 0.591 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.023 0.977 36 H 0.023 0.977 37 H 0.376 0.624 38 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.070 20.652 0.092 23.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.012 4.012 3 N -0.251 5.251 4 C -0.054 4.054 5 C -0.132 4.132 6 C -0.225 4.225 7 C 0.381 3.619 8 O -0.437 6.437 9 N -0.365 5.365 10 C 0.010 3.990 11 C -0.157 4.157 12 C 0.025 3.975 13 N -0.390 5.390 14 C -0.381 4.381 15 H 0.093 0.907 16 C -0.267 4.267 17 N -0.619 5.619 18 Si 0.803 3.197 19 H -0.213 1.213 20 H -0.220 1.220 21 H -0.195 1.195 22 N -0.147 5.147 23 H 0.280 0.720 24 H 0.121 0.879 25 H 0.124 0.876 26 H 0.117 0.883 27 H 0.096 0.904 28 H 0.099 0.901 29 H 0.096 0.904 30 H 0.245 0.755 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.041 0.959 36 H 0.041 0.959 37 H 0.208 0.792 38 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -11.331 21.725 0.080 24.503 hybrid contribution 0.182 -2.491 0.000 2.497 sum -11.149 19.235 0.080 22.232 Atomic orbital electron populations 1.20559 0.80854 1.06115 1.05577 1.24269 0.97410 0.80806 0.98691 1.70115 1.01676 1.29888 1.23435 1.21373 0.93823 0.90988 0.99198 1.20264 0.92481 0.97263 1.03225 1.20660 0.84507 0.95148 1.22223 1.16965 0.86968 0.81788 0.76151 1.90807 1.27230 1.73697 1.51987 1.45752 1.10764 1.05095 1.74930 1.21164 0.86715 0.88588 1.02494 1.21704 0.98317 0.92330 1.03306 1.20677 0.95469 0.83272 0.98108 1.42541 1.05905 1.01001 1.89581 1.19643 0.89623 0.87362 1.41499 0.90722 1.25572 0.98232 0.99364 1.03498 1.69796 1.16019 1.16734 1.59355 0.85137 0.78487 0.78619 0.77504 1.21303 1.21988 1.19521 1.43104 1.04708 1.11147 1.55710 0.72032 0.87931 0.87642 0.88304 0.90418 0.90130 0.90439 0.75518 0.91425 0.91428 0.90667 0.90662 0.95915 0.95899 0.79215 0.93872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.43 10.51 71.24 0.75 0.32 16 2 C 0.25 3.98 8.12 138.20 1.12 5.10 16 3 N -0.53 -12.18 11.20 -175.57 -1.97 -14.14 16 4 C 0.08 2.00 7.15 41.96 0.30 2.30 16 5 C -0.07 -1.68 9.88 71.24 0.70 -0.98 16 6 C -0.11 -2.47 7.07 40.01 0.28 -2.19 16 7 C 0.59 15.18 7.79 86.47 0.67 15.85 16 8 O -0.56 -18.03 14.82 -4.29 -0.06 -18.09 16 9 N -0.71 -15.00 5.55 -467.01 -2.59 -17.59 16 10 C 0.13 3.34 5.67 86.38 0.49 3.83 16 11 C -0.12 -3.28 5.44 30.59 0.17 -3.11 16 12 C 0.15 5.78 6.26 86.38 0.54 6.32 16 13 N -0.75 -37.22 5.60 -343.45 -1.92 -39.15 16 14 C -0.25 -13.88 9.99 84.03 0.84 -13.04 16 15 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16 16 C -0.07 -4.23 5.50 84.86 0.47 -3.76 16 17 N -0.97 -58.30 13.06 21.65 0.28 -58.01 16 18 Si 0.97 45.67 29.55 68.60 2.03 47.70 16 19 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 20 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 21 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 22 N -0.54 -7.89 6.07 -176.11 -1.07 -8.96 16 23 H 0.44 3.18 8.32 -92.70 -0.77 2.41 16 24 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 25 H 0.10 0.11 8.14 -2.39 -0.02 0.09 16 26 H 0.10 0.59 8.14 -2.38 -0.02 0.57 16 27 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.08 1.93 6.48 -2.39 -0.02 1.91 16 30 H 0.41 6.02 7.72 -92.70 -0.72 5.31 16 31 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 34 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.38 19.52 7.67 -92.70 -0.71 18.81 16 38 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 Total: -1.00 -74.67 326.45 -0.07 -74.74 By element: Atomic # 1 Polarization: 23.98 SS G_CDS: -1.10 Total: 22.89 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: 6.33 Total: 10.63 kcal Atomic # 7 Polarization: -130.59 SS G_CDS: -7.27 Total: -137.86 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: -0.06 Total: -18.09 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -74.67 -0.07 -74.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166886750.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.830 kcal (2) G-P(sol) polarization free energy of solvation -74.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds