Wall clock time and date at job start Mon Mar 30 2020 19:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00404 * 2 1 4 4 H 1.48500 * 109.47454 * 240.00105 * 3 2 1 5 5 H 1.48496 * 109.46966 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46926 * 119.99896 * 3 2 1 7 7 C 1.37884 * 119.99896 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00191 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99709 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47130 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47131 * 179.97438 * 10 9 7 12 12 N 1.46506 * 109.47289 * 180.02562 * 11 10 9 13 13 C 1.34774 * 120.00072 * 180.02562 * 12 11 10 14 14 O 1.21284 * 120.00066 * 0.02562 * 13 12 11 15 15 C 1.50696 * 119.99838 * 180.02562 * 13 12 11 16 16 H 1.09005 * 109.47547 * 40.00029 * 15 13 12 17 17 N 1.46900 * 109.47499 * 160.00079 * 15 13 12 18 18 C 1.53006 * 109.46981 * 279.99795 * 15 13 12 19 19 C 1.50698 * 109.46884 * 174.99839 * 18 15 13 20 20 C 1.34670 * 126.58903 * 85.03170 * 19 18 15 21 21 N 1.34138 * 108.01962 * 179.97438 * 20 19 18 22 22 C 1.30500 * 109.25392 * 359.97438 * 21 20 19 23 23 N 1.35036 * 108.69983 * 359.76795 * 22 21 20 24 24 H 0.97005 * 126.39633 * 180.26774 * 23 22 21 25 25 H 0.97007 * 119.99539 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46980 * 59.99845 * 9 7 2 27 27 H 1.09004 * 109.47113 * 299.99826 * 9 7 2 28 28 H 1.09001 * 109.46997 * 60.00245 * 10 9 7 29 29 H 1.08996 * 109.47452 * 299.99818 * 10 9 7 30 30 H 1.09001 * 109.47289 * 60.00050 * 11 10 9 31 31 H 1.09004 * 109.47261 * 300.00306 * 11 10 9 32 32 H 0.97001 * 119.99251 * 0.02562 * 12 11 10 33 33 H 1.00899 * 110.99745 * 59.99578 * 17 15 13 34 34 H 1.00898 * 111.00333 * 183.95423 * 17 15 13 35 35 H 1.08997 * 109.47323 * 295.00167 * 18 15 13 36 36 H 1.09000 * 109.47010 * 55.00181 * 18 15 13 37 37 H 1.07999 * 125.99369 * 359.95365 * 20 19 18 38 38 H 1.07998 * 125.64533 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4800 -4.9871 0.0012 12 7 2.4319 -6.1008 0.0018 13 6 1.9825 -7.3714 0.0019 14 8 0.7901 -7.5929 0.0010 15 6 2.9617 -8.5168 0.0031 16 1 3.7957 -8.2813 0.6643 17 7 2.2903 -9.7346 0.4767 18 6 3.4846 -8.7423 -1.4170 19 6 4.5535 -9.8044 -1.3960 20 6 4.3626 -11.1365 -1.4480 21 7 5.5648 -11.7299 -1.4059 22 6 6.4934 -10.8161 -1.3303 23 7 5.9053 -9.6005 -1.3271 24 1 6.3565 -8.7430 -1.2823 25 1 -0.4850 0.8401 0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6239 -2.5567 0.8903 28 1 2.8717 -3.6045 0.8906 29 1 2.8717 -3.6045 -0.8894 30 1 0.8530 -5.0451 -0.8886 31 1 0.8535 -5.0445 0.8914 32 1 3.3856 -5.9235 0.0021 33 1 1.5129 -9.9742 -0.1201 34 1 2.9414 -10.5021 0.5480 35 1 2.6649 -9.0643 -2.0592 36 1 3.9038 -7.8126 -1.8017 37 1 3.4087 -11.6390 -1.5120 38 1 7.5563 -11.0013 -1.2829 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001220191151.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:23:27 Heat of formation + Delta-G solvation = -27.163724 kcal Electronic energy + Delta-G solvation = -19230.383251 eV Core-core repulsion = 16106.679983 eV Total energy + Delta-G solvation = -3123.703268 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.148 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.02345 -40.88014 -37.18538 -36.44262 -35.19398 -33.48245 -33.02054 -31.47808 -29.32495 -28.06057 -25.68865 -24.11461 -22.44821 -22.31389 -21.78385 -21.02335 -19.00739 -18.56274 -18.35082 -17.03366 -16.70442 -16.47713 -16.09999 -16.03902 -15.51534 -15.38516 -14.92528 -14.54983 -14.40572 -14.20689 -14.02061 -13.76304 -13.71426 -13.39820 -12.72590 -12.66409 -12.54984 -12.40962 -11.66428 -11.58555 -11.25938 -11.03580 -10.99499 -10.79118 -10.54959 -10.10105 -9.81847 -9.31214 -8.19556 -6.31263 1.01858 1.41736 1.44572 1.52473 1.61156 2.07237 2.20164 2.31865 2.42655 3.14307 3.54256 3.62903 3.88405 3.93500 3.97607 4.14190 4.21758 4.22964 4.32583 4.55515 4.58154 4.65934 4.80112 4.94925 5.00312 5.17442 5.24151 5.43254 5.52775 5.70993 5.73738 5.84303 6.04411 6.21867 6.48485 6.55829 6.59357 6.86683 7.11902 7.26260 7.38564 8.92379 Molecular weight = 266.15amu Principal moments of inertia in cm(-1) A = 0.032854 B = 0.002910 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.049561 B = 9619.450226 C =10320.478925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.967 3.033 4 H -0.264 1.264 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.542 4.542 8 H 0.068 0.932 9 C 0.023 3.977 10 C -0.100 4.100 11 C 0.129 3.871 12 N -0.712 5.712 13 C 0.512 3.488 14 O -0.577 6.577 15 C 0.097 3.903 16 H 0.118 0.882 17 N -0.835 5.835 18 C -0.066 4.066 19 C -0.020 4.020 20 C -0.043 4.043 21 N -0.537 5.537 22 C 0.192 3.808 23 N -0.553 5.553 24 H 0.436 0.564 25 H 0.263 0.737 26 H -0.008 1.008 27 H -0.010 1.010 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.050 0.950 31 H 0.045 0.955 32 H 0.416 0.584 33 H 0.350 0.650 34 H 0.357 0.643 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.169 0.831 38 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.988 -19.167 -3.092 25.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.791 3.209 4 H -0.189 1.189 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.580 4.580 8 H 0.086 0.914 9 C -0.015 4.015 10 C -0.138 4.138 11 C 0.005 3.995 12 N -0.364 5.364 13 C 0.298 3.702 14 O -0.455 6.455 15 C -0.019 4.019 16 H 0.136 0.864 17 N -0.369 5.369 18 C -0.107 4.107 19 C -0.137 4.137 20 C -0.191 4.191 21 N -0.257 5.257 22 C -0.092 4.092 23 N -0.158 5.158 24 H 0.277 0.723 25 H 0.072 0.928 26 H 0.010 0.990 27 H 0.008 0.992 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.252 0.748 33 H 0.164 0.836 34 H 0.174 0.826 35 H 0.108 0.892 36 H 0.117 0.883 37 H 0.186 0.814 38 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 14.953 -19.685 -2.443 24.841 hybrid contribution 0.461 1.874 -0.847 2.107 sum 15.414 -17.811 -3.290 23.784 Atomic orbital electron populations 1.70109 1.07998 1.27859 1.51650 1.26034 0.95725 1.03597 0.94802 0.85475 0.78191 0.77927 0.79300 1.18900 1.21319 1.19022 1.21667 0.93789 0.91989 1.50509 0.91387 1.18949 0.94505 0.93088 0.94977 1.21583 0.98367 0.91662 1.02211 1.21219 0.92040 0.85642 1.00574 1.45934 1.11104 1.04906 1.74479 1.21054 0.89535 0.84462 0.75104 1.90691 1.18981 1.85199 1.50664 1.21246 0.94798 0.89669 0.96189 0.86416 1.58512 1.13940 1.06239 1.58222 1.20700 0.95693 0.97490 0.96848 1.20970 0.84841 0.96409 1.11506 1.22313 0.97178 0.90789 1.08817 1.70293 0.99973 1.34345 1.21041 1.25707 1.01135 0.79156 1.03193 1.43284 1.05957 1.11112 1.55424 0.72274 0.92828 0.98991 0.99190 0.91394 0.91034 0.93121 0.93658 0.74757 0.83554 0.82640 0.89151 0.88261 0.81412 0.74148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.75 13.29 21.45 0.28 -56.47 16 2 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 3 Si 0.97 42.99 29.54 68.60 2.03 45.01 16 4 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 5 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 7 C -0.54 -29.57 9.11 25.60 0.23 -29.34 16 8 H 0.07 3.45 7.74 -2.91 -0.02 3.42 16 9 C 0.02 1.14 4.97 29.85 0.15 1.29 16 10 C -0.10 -3.65 5.27 30.59 0.16 -3.49 16 11 C 0.13 4.33 5.67 86.38 0.49 4.82 16 12 N -0.71 -17.24 5.56 -463.05 -2.57 -19.81 16 13 C 0.51 13.28 7.08 87.66 0.62 13.91 16 14 O -0.58 -20.76 16.25 -3.04 -0.05 -20.81 16 15 C 0.10 1.62 3.20 44.17 0.14 1.76 16 16 H 0.12 1.56 8.14 -2.38 -0.02 1.54 16 17 N -0.84 -15.64 8.93 -171.79 -1.53 -17.17 16 18 C -0.07 -0.83 5.40 29.85 0.16 -0.67 16 19 C -0.02 -0.26 6.10 40.95 0.25 -0.01 16 20 C -0.04 -0.72 10.49 83.52 0.88 0.16 16 21 N -0.54 -9.95 11.25 -200.31 -2.25 -12.20 16 22 C 0.19 2.08 13.04 180.26 2.35 4.44 16 23 N -0.55 -4.58 6.15 -186.50 -1.15 -5.72 16 24 H 0.44 0.82 8.96 -92.70 -0.83 -0.01 16 25 H 0.26 15.05 8.31 -92.70 -0.77 14.28 16 26 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 27 H -0.01 -0.58 8.14 -2.38 -0.02 -0.60 16 28 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.07 2.36 8.14 -2.39 -0.02 2.35 16 30 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 32 H 0.42 6.86 8.47 -92.71 -0.79 6.08 16 33 H 0.35 6.90 8.58 -89.69 -0.77 6.13 16 34 H 0.36 5.59 7.29 -89.70 -0.65 4.93 16 35 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.17 2.51 8.06 -2.91 -0.02 2.49 16 38 H 0.24 0.59 8.06 -2.91 -0.02 0.56 16 Total: -1.00 -77.08 326.82 -1.28 -78.36 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: -1.93 Total: 15.71 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: 5.89 Total: -6.89 kcal Atomic # 7 Polarization: -104.16 SS G_CDS: -7.22 Total: -111.38 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: -0.05 Total: -20.81 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.01 kcal Total: -77.08 -1.28 -78.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220191151.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.201 kcal (2) G-P(sol) polarization free energy of solvation -77.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds