Wall clock time and date at job start Mon Mar 30 2020 19:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38399 * 119.84940 * 2 1 4 4 C 1.37922 * 120.15112 * 179.97438 * 3 2 1 5 5 C 1.50705 * 120.07755 * 179.97438 * 4 3 2 6 6 C 1.39644 * 119.84922 * 0.02562 * 4 3 2 7 7 C 1.47880 * 120.15135 * 179.97438 * 6 4 3 8 8 C 1.39156 * 120.33277 * 269.74105 * 7 6 4 9 9 C 1.38092 * 119.98326 * 179.76925 * 8 7 6 10 10 C 1.38923 * 120.67082 * 0.50670 * 9 8 7 11 11 C 1.36438 * 120.68899 * 359.74913 * 10 9 8 12 12 C 1.40757 * 119.98408 * 359.97438 * 11 10 9 13 13 C 1.40877 * 120.32824 * 179.97438 * 12 11 10 14 14 H 1.08001 * 120.00150 * 204.95678 * 13 12 11 15 15 C 1.40076 * 120.00286 * 24.96695 * 13 12 11 16 16 N 1.30770 * 119.99765 * 17.48319 * 15 13 12 17 17 Si 1.86794 * 120.00042 * 197.48756 * 15 13 12 18 18 H 1.48502 * 109.47092 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47177 * 119.99420 * 17 15 13 20 20 H 1.48503 * 109.47200 * 239.99769 * 17 15 13 21 21 C 1.39654 * 119.70538 * 359.97438 * 6 4 3 22 22 C 1.50690 * 120.07760 * 180.02562 * 21 6 4 23 23 C 1.37929 * 119.84065 * 0.02562 * 21 6 4 24 24 H 1.09003 * 109.47434 * 89.99751 * 1 2 3 25 25 H 1.09002 * 109.46435 * 209.99251 * 1 2 3 26 26 H 1.08997 * 109.47093 * 329.99148 * 1 2 3 27 27 H 1.07999 * 119.92463 * 359.70869 * 3 2 1 28 28 H 1.08998 * 109.46838 * 90.00421 * 5 4 3 29 29 H 1.08999 * 109.46984 * 210.00891 * 5 4 3 30 30 H 1.09003 * 109.46875 * 330.00552 * 5 4 3 31 31 H 1.08003 * 120.01136 * 359.97438 * 8 7 6 32 32 H 1.07997 * 119.66326 * 180.25780 * 9 8 7 33 33 H 1.08000 * 119.65500 * 179.77047 * 10 9 8 34 34 H 1.07991 * 120.01331 * 180.02562 * 11 10 9 35 35 H 0.96999 * 119.99719 * 180.02562 * 16 15 13 36 36 H 1.08998 * 109.47482 * 269.98127 * 22 21 6 37 37 H 1.09004 * 109.47386 * 29.97872 * 22 21 6 38 38 H 1.09003 * 109.46888 * 149.97690 * 22 21 6 39 39 H 1.07999 * 119.91694 * 179.97438 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2004 0.0000 4 6 3.5750 1.2076 0.0005 5 6 4.3235 2.5157 -0.0001 6 6 4.2764 0.0001 0.0005 7 6 5.7553 0.0001 0.0005 8 6 6.4580 -0.0053 -1.2005 9 6 7.8389 -0.0005 -1.1921 10 6 8.5403 -0.0007 0.0070 11 6 7.8791 -0.0007 1.2005 12 6 6.4717 0.0002 1.2250 13 6 5.7816 -0.0002 2.4531 14 1 4.7775 -0.3942 2.5082 15 6 6.3975 0.5106 3.6028 16 7 7.4453 1.2854 3.4939 17 14 5.7223 0.0848 5.2916 18 1 4.5399 -0.8013 5.1430 19 1 6.7683 -0.6133 6.0814 20 1 5.3214 1.3309 5.9930 21 6 3.5751 -1.2075 0.0005 22 6 4.3236 -2.5155 0.0011 23 6 2.1959 -1.2003 0.0000 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3632 -0.8901 0.5137 26 1 -0.3633 0.8899 0.5139 27 1 1.6522 2.1335 -0.0048 28 1 4.5035 2.8317 1.0275 29 1 5.2765 2.3888 -0.5136 30 1 3.7315 3.2727 -0.5146 31 1 5.9236 -0.0100 -2.1391 32 1 8.3791 -0.0005 -2.1273 33 1 9.6202 -0.0007 -0.0055 34 1 8.4352 -0.0005 2.1262 35 1 7.8720 1.6388 4.2901 36 1 4.5041 -2.8313 -1.0264 37 1 5.2765 -2.3886 0.5150 38 1 3.7315 -3.2726 0.5153 39 1 1.6523 -2.1335 -0.0004 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239550300.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:24:07 Heat of formation + Delta-G solvation = 16.128803 kcal Electronic energy + Delta-G solvation = -19987.680264 eV Core-core repulsion = 17244.410813 eV Total energy + Delta-G solvation = -2743.269452 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.137 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.22196 -37.18884 -33.69356 -33.20138 -32.80557 -29.78595 -29.32259 -27.31995 -26.03691 -25.99563 -24.76528 -21.06947 -20.79618 -19.99006 -19.11273 -17.24587 -15.78811 -15.22440 -15.08770 -14.29160 -13.85745 -13.76749 -13.26255 -13.23381 -12.65729 -12.55455 -12.42656 -12.38055 -12.19825 -12.03406 -11.84163 -11.60112 -11.22355 -11.10518 -11.00052 -10.81996 -10.60772 -10.45427 -10.32723 -10.23273 -9.64654 -9.36034 -9.18144 -7.87362 -7.54863 -7.40819 -7.34111 -6.78967 -4.35693 2.06481 2.09203 2.74330 2.97269 3.06464 3.12735 3.22758 3.92197 4.38573 4.61732 5.31430 5.33618 5.55426 5.60156 5.74459 5.80093 5.82957 5.91642 6.08930 6.11749 6.23409 6.25555 6.28787 6.30078 6.43361 6.47031 6.53379 6.62276 6.78568 6.90601 7.04833 7.06200 7.16536 7.17949 7.26515 7.36700 7.54828 7.60549 7.71746 7.92618 8.06455 8.11837 8.27474 8.62485 8.87247 8.96867 10.14028 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.014379 B = 0.008770 C = 0.006774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.823996 B = 3191.914604 C = 4132.461452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.106 4.106 3 C -0.132 4.132 4 C -0.067 4.067 5 C -0.105 4.105 6 C 0.019 3.981 7 C -0.174 4.174 8 C -0.075 4.075 9 C -0.245 4.245 10 C -0.103 4.103 11 C -0.163 4.163 12 C 0.130 3.870 13 C -0.447 4.447 14 H 0.079 0.921 15 C 0.078 3.922 16 N -0.789 5.789 17 Si 0.900 3.100 18 H -0.259 1.259 19 H -0.272 1.272 20 H -0.274 1.274 21 C -0.077 4.077 22 C -0.107 4.107 23 C -0.133 4.133 24 H 0.060 0.940 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.110 0.890 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.048 0.952 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.117 0.883 35 H 0.280 0.720 36 H 0.059 0.941 37 H 0.078 0.922 38 H 0.052 0.948 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.058 -1.619 -3.334 7.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.106 4.106 3 C -0.150 4.150 4 C -0.067 4.067 5 C -0.161 4.161 6 C 0.019 3.981 7 C -0.176 4.176 8 C -0.093 4.093 9 C -0.264 4.264 10 C -0.122 4.122 11 C -0.182 4.182 12 C 0.128 3.872 13 C -0.476 4.476 14 H 0.097 0.903 15 C -0.140 4.140 16 N -0.414 5.414 17 Si 0.725 3.275 18 H -0.183 1.183 19 H -0.197 1.197 20 H -0.200 1.200 21 C -0.077 4.077 22 C -0.163 4.163 23 C -0.151 4.151 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.128 0.872 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.067 0.933 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.135 0.865 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.097 0.903 38 H 0.071 0.929 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -6.899 -1.471 -3.179 7.737 hybrid contribution -0.211 -0.038 0.869 0.895 sum -7.111 -1.509 -2.310 7.627 Atomic orbital electron populations 1.20679 0.92223 1.01921 1.01349 1.19689 0.95102 0.93259 1.02574 1.20667 0.93582 0.96756 1.04044 1.20030 0.92821 0.95295 0.98568 1.20670 0.99943 0.93060 1.02455 1.18545 0.93076 0.90826 0.95618 1.18426 0.89593 1.16386 0.93155 1.20472 0.93601 0.99912 0.95329 1.20224 0.93688 1.16393 0.96126 1.20437 0.97345 1.00971 0.93426 1.21042 0.94623 1.05907 0.96604 1.17469 0.91365 0.87351 0.91064 1.19529 1.01337 1.34733 0.92034 0.90275 1.25921 0.94082 0.92651 1.01382 1.69811 1.17829 1.22051 1.31682 0.86370 0.80174 0.79437 0.81539 1.18259 1.19686 1.19976 1.20042 0.92945 0.95190 0.99558 1.20694 1.00911 0.93419 1.01319 1.20643 0.93538 0.96734 1.04176 0.92083 0.92250 0.92221 0.87226 0.91104 0.90976 0.93341 0.89643 0.89685 0.89742 0.86507 0.90920 0.92239 0.90335 0.92865 0.87273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.34 10.01 36.01 0.36 -0.97 16 2 C -0.11 -1.78 5.89 -104.51 -0.62 -2.39 16 3 C -0.13 -2.36 9.34 -39.64 -0.37 -2.73 16 4 C -0.07 -1.36 5.91 -104.21 -0.62 -1.98 16 5 C -0.10 -2.03 9.62 36.01 0.35 -1.68 16 6 C 0.02 0.42 4.04 -104.90 -0.42 -0.01 16 7 C -0.17 -4.05 2.49 -104.22 -0.26 -4.31 16 8 C -0.07 -1.67 9.50 -39.29 -0.37 -2.04 16 9 C -0.24 -5.42 10.03 -39.38 -0.40 -5.82 16 10 C -0.10 -2.39 9.96 -39.98 -0.40 -2.79 16 11 C -0.16 -4.11 8.64 -39.28 -0.34 -4.45 16 12 C 0.13 3.31 5.32 -106.56 -0.57 2.74 16 13 C -0.45 -11.50 8.50 -37.89 -0.32 -11.82 16 14 H 0.08 2.07 7.27 -52.49 -0.38 1.69 16 15 C 0.08 1.92 5.14 -17.31 -0.09 1.83 16 16 N -0.79 -19.86 10.96 55.55 0.61 -19.25 16 17 Si 0.90 18.72 29.59 -169.99 -5.03 13.69 16 18 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 19 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 20 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 21 C -0.08 -1.53 5.91 -104.21 -0.62 -2.14 16 22 C -0.11 -1.93 9.62 36.00 0.35 -1.59 16 23 C -0.13 -2.33 9.34 -39.64 -0.37 -2.70 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.06 0.69 8.08 -51.93 -0.42 0.27 16 26 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 27 H 0.11 1.70 8.06 -52.49 -0.42 1.27 16 28 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 29 H 0.07 1.50 6.86 -51.93 -0.36 1.14 16 30 H 0.05 0.78 8.09 -51.93 -0.42 0.36 16 31 H 0.09 1.76 8.06 -52.48 -0.42 1.34 16 32 H 0.08 1.69 8.06 -52.49 -0.42 1.26 16 33 H 0.08 1.76 8.06 -52.49 -0.42 1.34 16 34 H 0.12 3.06 6.17 -52.49 -0.32 2.73 16 35 H 0.28 6.43 8.29 -40.82 -0.34 6.09 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.08 1.61 6.87 -51.93 -0.36 1.25 16 38 H 0.05 0.84 8.09 -51.93 -0.42 0.42 16 39 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 LS Contribution 323.65 15.07 4.88 4.88 Total: -1.00 -26.53 323.65 -9.86 -36.39 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -5.61 Total: 7.14 kcal Atomic # 6 Polarization: -38.15 SS G_CDS: -4.70 Total: -42.85 kcal Atomic # 7 Polarization: -19.86 SS G_CDS: 0.61 Total: -19.25 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.03 Total: 13.69 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -26.53 -9.86 -36.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239550300.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.515 kcal (2) G-P(sol) polarization free energy of solvation -26.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds