Wall clock time and date at job start Mon Mar 30 2020 19:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38340 * 119.93654 * 2 1 4 4 C 1.38300 * 120.24409 * 179.97438 * 3 2 1 5 5 C 1.38043 * 120.11958 * 359.76961 * 4 3 2 6 6 C 1.50699 * 120.06137 * 180.27705 * 5 4 3 7 7 C 1.39316 * 119.87585 * 0.50433 * 5 4 3 8 8 C 1.48400 * 120.12299 * 179.74593 * 7 5 4 9 9 C 1.39327 * 120.12198 * 129.72641 * 8 7 5 10 10 C 1.38022 * 119.87973 * 179.97438 * 9 8 7 11 11 C 1.38316 * 120.11627 * 0.27933 * 10 9 8 12 12 C 1.50703 * 119.87525 * 179.69883 * 11 10 9 13 13 C 1.50696 * 109.47121 * 90.00191 * 12 11 10 14 14 H 1.08001 * 119.99823 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00010 * 179.97438 * 13 12 11 16 16 N 1.31508 * 120.00277 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99909 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47236 * 90.00087 * 17 15 13 19 19 H 1.48495 * 109.47296 * 210.00375 * 17 15 13 20 20 H 1.48502 * 109.47105 * 330.00170 * 17 15 13 21 21 C 1.38321 * 120.24650 * 359.44564 * 11 10 9 22 22 C 1.38022 * 120.11910 * 0.55009 * 21 11 10 23 23 C 1.37995 * 119.93929 * 179.97438 * 2 1 3 24 24 H 1.09001 * 109.46898 * 270.01722 * 1 2 3 25 25 H 1.08995 * 109.46974 * 30.02065 * 1 2 3 26 26 H 1.08999 * 109.46926 * 150.02249 * 1 2 3 27 27 H 1.08004 * 119.88193 * 359.97438 * 3 2 1 28 28 H 1.07996 * 119.94155 * 180.02562 * 4 3 2 29 29 H 1.08998 * 109.46903 * 270.22527 * 6 5 4 30 30 H 1.08992 * 109.47543 * 30.23432 * 6 5 4 31 31 H 1.09003 * 109.47050 * 150.23029 * 6 5 4 32 32 H 1.07999 * 120.06152 * 0.02562 * 9 8 7 33 33 H 1.08002 * 119.93878 * 179.97438 * 10 9 8 34 34 H 1.09004 * 109.47337 * 210.00044 * 12 11 10 35 35 H 1.09000 * 109.47278 * 329.99845 * 12 11 10 36 36 H 0.97004 * 120.00503 * 179.97438 * 16 15 13 37 37 H 1.07997 * 119.94246 * 180.27566 * 21 11 10 38 38 H 1.08003 * 120.06203 * 179.74403 * 22 21 11 39 39 H 1.08002 * 120.06616 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1988 0.0000 4 6 3.5804 1.2062 0.0005 5 6 4.2795 0.0160 0.0059 6 6 5.7864 0.0256 0.0128 7 6 3.5893 -1.1942 0.0001 8 6 4.3354 -2.4771 0.0001 9 6 4.0173 -3.4709 0.9233 10 6 4.7141 -4.6623 0.9184 11 6 5.7304 -4.8683 0.0031 12 6 6.4922 -6.1686 0.0071 13 6 5.8099 -7.1533 -0.9071 14 1 4.9139 -6.8664 -1.4376 15 6 6.3294 -8.4205 -1.0662 16 7 7.4200 -8.7701 -0.4199 17 14 5.4832 -9.6414 -2.1989 18 1 6.0379 -9.5110 -3.5702 19 1 5.7140 -11.0210 -1.7006 20 1 4.0248 -9.3625 -2.2263 21 6 6.0466 -3.8873 -0.9193 22 6 5.3563 -2.6921 -0.9235 23 6 2.1957 -1.1958 0.0005 24 1 -0.3633 0.0003 1.0277 25 1 -0.3633 0.8898 -0.5141 26 1 -0.3633 -0.8902 -0.5135 27 1 1.6544 2.1325 -0.0004 28 1 4.1144 2.1450 0.0010 29 1 6.1544 0.0301 -1.0132 30 1 6.1418 0.9166 0.5302 31 1 6.1531 -0.8632 0.5263 32 1 3.2264 -3.3097 1.6408 33 1 4.4685 -5.4333 1.6339 34 1 7.5102 -5.9944 -0.3414 35 1 6.5187 -6.5710 1.0198 36 1 7.7853 -9.6617 -0.5315 37 1 6.8381 -4.0550 -1.6347 38 1 5.6068 -1.9251 -1.6415 39 1 1.6558 -2.1312 0.0014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241191392.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:25:04 Heat of formation + Delta-G solvation = 19.388755 kcal Electronic energy + Delta-G solvation = -18683.874362 eV Core-core repulsion = 15940.746272 eV Total energy + Delta-G solvation = -2743.128090 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.86628 -38.17523 -34.31513 -33.33416 -32.06623 -30.41139 -29.89180 -29.17102 -26.78938 -24.88807 -23.64972 -22.35946 -21.68912 -20.69735 -19.70653 -16.39511 -16.22070 -15.61064 -15.46943 -14.93704 -14.50536 -14.24779 -14.03605 -13.83371 -13.30466 -12.92184 -12.83698 -12.68743 -12.61652 -12.43207 -11.97168 -11.87773 -11.56111 -11.29556 -11.25298 -11.02752 -10.85911 -10.71239 -10.47398 -10.22807 -9.58149 -9.46950 -8.86628 -8.45257 -8.44151 -8.30364 -7.55379 -6.05948 -4.10054 1.17823 1.39897 2.04724 2.17375 3.29460 3.35727 3.40015 3.75333 4.35832 4.52475 4.77936 4.81228 4.89813 5.04114 5.16641 5.28408 5.40394 5.46921 5.48061 5.51573 5.53217 5.68851 5.71146 5.77212 5.94316 5.97154 6.04935 6.13042 6.24450 6.28516 6.40992 6.54068 6.61799 6.68263 6.75751 7.03057 7.10100 7.16171 7.19005 7.48199 7.69570 7.82771 7.89775 8.29690 8.95257 9.53935 11.03799 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.029251 B = 0.003888 C = 0.003611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.990828 B = 7199.466654 C = 7752.248483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.094 4.094 3 C -0.127 4.127 4 C -0.118 4.118 5 C -0.083 4.083 6 C -0.116 4.116 7 C -0.023 4.023 8 C -0.088 4.088 9 C -0.105 4.105 10 C -0.126 4.126 11 C -0.026 4.026 12 C 0.046 3.954 13 C -0.512 4.512 14 H 0.057 0.943 15 C 0.058 3.942 16 N -0.894 5.894 17 Si 0.895 3.105 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.273 1.273 21 C -0.126 4.126 22 C -0.103 4.103 23 C -0.108 4.108 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.117 0.883 28 H 0.119 0.881 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.075 0.925 32 H 0.112 0.888 33 H 0.119 0.881 34 H 0.029 0.971 35 H 0.029 0.971 36 H 0.262 0.738 37 H 0.119 0.881 38 H 0.113 0.887 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.699 18.665 1.558 20.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.094 4.094 3 C -0.145 4.145 4 C -0.136 4.136 5 C -0.083 4.083 6 C -0.172 4.172 7 C -0.023 4.023 8 C -0.088 4.088 9 C -0.123 4.123 10 C -0.144 4.144 11 C -0.026 4.026 12 C 0.009 3.991 13 C -0.550 4.550 14 H 0.075 0.925 15 C -0.143 4.143 16 N -0.533 5.533 17 Si 0.723 3.277 18 H -0.206 1.206 19 H -0.211 1.211 20 H -0.198 1.198 21 C -0.144 4.144 22 C -0.121 4.121 23 C -0.126 4.126 24 H 0.086 0.914 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.135 0.865 28 H 0.137 0.863 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.130 0.870 33 H 0.137 0.863 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.072 0.928 37 H 0.137 0.863 38 H 0.131 0.869 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -8.578 18.511 1.589 20.464 hybrid contribution -0.447 -0.760 -0.651 1.096 sum -9.025 17.751 0.938 19.935 Atomic orbital electron populations 1.20766 0.91400 1.02589 1.02130 1.19801 0.95884 0.93078 1.00653 1.20958 0.94128 0.97221 1.02154 1.20905 0.94040 0.97269 1.01386 1.19960 0.96123 0.92183 1.00038 1.20892 0.91172 1.02909 1.02274 1.18773 0.92618 0.92077 0.98789 1.18470 0.98323 0.93144 0.98847 1.21053 0.99573 0.93347 0.98328 1.21026 0.96701 0.96502 1.00125 1.20780 0.93998 0.96301 0.91494 1.18391 0.94886 0.87678 0.98161 1.21051 1.11028 0.96632 1.26310 0.92457 1.25009 0.95027 0.98260 0.96009 1.69952 1.21070 1.20133 1.42139 0.86534 0.79986 0.80338 0.80849 1.20563 1.21137 1.19792 1.21030 1.00805 0.93115 0.99467 1.21086 0.95574 0.97326 0.98108 1.21129 0.93198 0.97597 1.00722 0.91377 0.91793 0.91577 0.86496 0.86279 0.91245 0.92094 0.90623 0.87040 0.86263 0.95266 0.95272 0.92814 0.86253 0.86918 0.85961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.99 10.01 36.01 0.36 -0.63 16 2 C -0.09 -1.09 5.87 -104.67 -0.61 -1.71 16 3 C -0.13 -1.39 9.69 -39.52 -0.38 -1.77 16 4 C -0.12 -1.35 9.69 -39.63 -0.38 -1.73 16 5 C -0.08 -1.09 5.87 -104.29 -0.61 -1.70 16 6 C -0.12 -1.35 8.46 36.01 0.30 -1.05 16 7 C -0.02 -0.33 5.47 -104.89 -0.57 -0.90 16 8 C -0.09 -1.45 4.71 -104.90 -0.49 -1.94 16 9 C -0.10 -1.79 9.51 -39.26 -0.37 -2.17 16 10 C -0.13 -2.45 9.68 -39.63 -0.38 -2.84 16 11 C -0.03 -0.56 5.07 -104.56 -0.53 -1.09 16 12 C 0.05 1.17 5.10 -29.04 -0.15 1.02 16 13 C -0.51 -14.32 9.09 -34.44 -0.31 -14.63 16 14 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.89 -26.33 13.29 55.43 0.74 -25.59 16 17 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 21 C -0.13 -2.45 9.68 -39.63 -0.38 -2.83 16 22 C -0.10 -1.74 7.92 -39.25 -0.31 -2.05 16 23 C -0.11 -1.46 9.16 -39.25 -0.36 -1.82 16 24 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 26 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 27 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 28 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 29 H 0.07 0.75 7.51 -51.93 -0.39 0.36 16 30 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 31 H 0.07 0.99 6.47 -51.93 -0.34 0.66 16 32 H 0.11 1.66 8.04 -52.49 -0.42 1.24 16 33 H 0.12 2.26 8.06 -52.49 -0.42 1.84 16 34 H 0.03 0.78 8.09 -51.93 -0.42 0.36 16 35 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 36 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 37 H 0.12 2.24 8.06 -52.49 -0.42 1.82 16 38 H 0.11 1.66 6.88 -52.48 -0.36 1.30 16 39 H 0.12 1.58 8.04 -52.49 -0.42 1.16 16 LS Contribution 328.40 15.07 4.95 4.95 Total: -1.00 -29.80 328.40 -10.32 -40.12 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -5.69 Total: 0.30 kcal Atomic # 6 Polarization: -30.98 SS G_CDS: -5.30 Total: -36.28 kcal Atomic # 7 Polarization: -26.33 SS G_CDS: 0.74 Total: -25.59 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.80 -10.32 -40.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241191392.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.510 kcal (2) G-P(sol) polarization free energy of solvation -29.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds