Wall clock time and date at job start Mon Mar 30 2020 19:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38402 * 119.92851 * 2 1 4 4 C 1.38367 * 120.29380 * 179.97438 * 3 2 1 5 5 C 1.37960 * 120.14144 * 359.76701 * 4 3 2 6 6 C 1.50702 * 120.07742 * 180.27849 * 5 4 3 7 7 C 1.39589 * 119.85470 * 0.52941 * 5 4 3 8 8 C 1.47977 * 120.14412 * 179.72307 * 7 5 4 9 9 C 1.39953 * 119.88525 * 309.72356 * 8 7 5 10 10 C 1.36238 * 120.12441 * 179.97438 * 9 8 7 11 11 C 1.40942 * 119.87543 * 359.97438 * 10 9 8 12 12 C 1.41027 * 120.11553 * 179.72603 * 11 10 9 13 13 H 1.08008 * 120.00085 * 153.61239 * 12 11 10 14 14 C 1.40015 * 120.00403 * 333.61225 * 12 11 10 15 15 N 1.30798 * 119.99720 * 343.92648 * 14 12 11 16 16 Si 1.86797 * 120.00531 * 163.92536 * 14 12 11 17 17 H 1.48508 * 109.46988 * 89.99934 * 16 14 12 18 18 H 1.48497 * 109.47247 * 209.99782 * 16 14 12 19 19 H 1.48494 * 109.46912 * 330.00503 * 16 14 12 20 20 C 1.40915 * 119.76822 * 0.02562 * 11 10 9 21 21 C 1.50697 * 120.06355 * 179.97438 * 20 11 10 22 22 C 1.36266 * 119.87355 * 359.97438 * 20 11 10 23 23 C 1.37917 * 119.92509 * 180.02562 * 2 1 3 24 24 H 1.09001 * 109.47645 * 269.98168 * 1 2 3 25 25 H 1.09000 * 109.47310 * 29.97812 * 1 2 3 26 26 H 1.08999 * 109.47476 * 149.97836 * 1 2 3 27 27 H 1.08003 * 119.85251 * 359.97438 * 3 2 1 28 28 H 1.07992 * 119.93016 * 180.02562 * 4 3 2 29 29 H 1.09000 * 109.46901 * 270.25432 * 6 5 4 30 30 H 1.09005 * 109.47027 * 30.24946 * 6 5 4 31 31 H 1.09000 * 109.47452 * 150.24924 * 6 5 4 32 32 H 1.08005 * 119.93738 * 359.95698 * 9 8 7 33 33 H 1.08001 * 120.05876 * 180.02562 * 10 9 8 34 34 H 0.96998 * 120.00198 * 180.02562 * 15 14 12 35 35 H 1.09007 * 109.47177 * 89.99646 * 21 20 11 36 36 H 1.08997 * 109.47154 * 209.99539 * 21 20 11 37 37 H 1.08996 * 109.46957 * 329.99989 * 21 20 11 38 38 H 1.08004 * 119.94060 * 179.97438 * 22 20 11 39 39 H 1.07999 * 120.07465 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1995 0.0000 4 6 3.5811 1.2083 0.0005 5 6 4.2815 0.0197 0.0059 6 6 5.7884 0.0310 0.0128 7 6 3.5912 -1.1936 -0.0003 8 6 4.3360 -2.4723 -0.0008 9 6 5.3610 -2.6819 -0.9304 10 6 6.0502 -3.8571 -0.9349 11 6 5.7296 -4.8625 -0.0006 12 6 6.4359 -6.0832 -0.0044 13 1 6.5193 -6.6617 0.9039 14 6 7.0290 -6.5452 -1.1855 15 7 6.6786 -6.0331 -2.3370 16 14 8.3206 -7.8930 -1.1171 17 1 7.6592 -9.2183 -1.2242 18 1 9.2736 -7.7230 -2.2432 19 1 9.0555 -7.8092 0.1705 20 6 4.6967 -4.6462 0.9332 21 6 4.3480 -5.7169 1.9348 22 6 4.0137 -3.4671 0.9289 23 6 2.1950 -1.1953 -0.0005 24 1 -0.3634 -0.0003 1.0276 25 1 -0.3634 0.8902 -0.5135 26 1 -0.3634 -0.8898 -0.5142 27 1 1.6539 2.1327 -0.0004 28 1 4.1140 2.1476 0.0009 29 1 6.1564 0.0364 -1.0132 30 1 6.1427 0.9224 0.5306 31 1 6.1562 -0.8575 0.5261 32 1 5.6058 -1.9107 -1.6458 33 1 6.8412 -4.0176 -1.6524 34 1 7.0892 -6.3534 -3.1553 35 1 4.9442 -5.5787 2.8368 36 1 3.2893 -5.6493 2.1851 37 1 4.5585 -6.6970 1.5069 38 1 3.2216 -3.3003 1.6439 39 1 1.6550 -2.1306 -0.0014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241192766.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:25:14 Heat of formation + Delta-G solvation = 13.683841 kcal Electronic energy + Delta-G solvation = -19203.813478 eV Core-core repulsion = 16460.438005 eV Total energy + Delta-G solvation = -2743.375473 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.23349 -37.55001 -34.16320 -33.33264 -31.81396 -30.69492 -28.96051 -28.66321 -26.15511 -24.98743 -24.34087 -22.28265 -20.71329 -20.28483 -18.86407 -17.25958 -15.60572 -15.36611 -15.01723 -14.71517 -14.05711 -13.88477 -13.46488 -13.26037 -12.92509 -12.69741 -12.58280 -12.37833 -12.29481 -11.81052 -11.70753 -11.45387 -11.30766 -11.25100 -11.17410 -11.01162 -10.83186 -10.58854 -10.34830 -10.29544 -9.54474 -9.37761 -9.20435 -8.37386 -8.00113 -7.40585 -7.10410 -6.82557 -4.39603 1.73901 1.85626 2.74639 3.01914 3.05448 3.06692 3.16706 3.85815 4.21972 4.57956 5.17737 5.22992 5.43675 5.47445 5.58333 5.60587 5.75131 5.89710 5.93633 6.01663 6.09700 6.16655 6.24165 6.30284 6.40249 6.40468 6.59982 6.65217 6.70432 6.72472 6.89552 6.93255 7.00276 7.04766 7.19965 7.24675 7.40110 7.52497 7.62266 7.89677 8.01047 8.08476 8.23672 8.55682 8.80677 8.91747 10.08420 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.029365 B = 0.004711 C = 0.004398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.297408 B = 5942.416721 C = 6365.072221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.095 4.095 3 C -0.146 4.146 4 C -0.118 4.118 5 C -0.098 4.098 6 C -0.109 4.109 7 C 0.016 3.984 8 C -0.196 4.196 9 C -0.077 4.077 10 C -0.168 4.168 11 C 0.121 3.879 12 C -0.451 4.451 13 H 0.082 0.918 14 C 0.075 3.925 15 N -0.786 5.786 16 Si 0.907 3.093 17 H -0.269 1.269 18 H -0.275 1.275 19 H -0.260 1.260 20 C -0.201 4.201 21 C -0.085 4.085 22 C -0.064 4.064 23 C -0.124 4.124 24 H 0.064 0.936 25 H 0.059 0.941 26 H 0.062 0.938 27 H 0.110 0.890 28 H 0.112 0.888 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.117 0.883 34 H 0.282 0.718 35 H 0.040 0.960 36 H 0.037 0.963 37 H 0.061 0.939 38 H 0.087 0.913 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.341 7.534 2.536 9.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.095 4.095 3 C -0.164 4.164 4 C -0.136 4.136 5 C -0.098 4.098 6 C -0.166 4.166 7 C 0.016 3.984 8 C -0.197 4.197 9 C -0.096 4.096 10 C -0.187 4.187 11 C 0.119 3.881 12 C -0.480 4.480 13 H 0.100 0.900 14 C -0.144 4.144 15 N -0.410 5.410 16 Si 0.731 3.269 17 H -0.194 1.194 18 H -0.200 1.200 19 H -0.183 1.183 20 C -0.203 4.203 21 C -0.141 4.141 22 C -0.082 4.082 23 C -0.142 4.142 24 H 0.082 0.918 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.128 0.872 28 H 0.130 0.870 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.096 0.904 32 H 0.107 0.893 33 H 0.135 0.865 34 H 0.093 0.907 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.079 0.921 38 H 0.106 0.894 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -4.295 7.492 2.273 8.930 hybrid contribution 0.504 -0.550 -0.203 0.773 sum -3.791 6.942 2.070 8.176 Atomic orbital electron populations 1.20729 0.91983 1.02159 1.01714 1.19737 0.95426 0.93308 1.01055 1.20804 0.94065 0.96806 1.04709 1.20825 0.93969 0.97082 1.01683 1.20024 0.95969 0.92347 1.01467 1.20809 0.91575 1.02384 1.01793 1.18919 0.92187 0.92677 0.94655 1.17997 1.03919 0.93985 1.03785 1.20456 0.95397 0.96838 0.96904 1.20960 1.02328 0.92608 1.02804 1.17540 0.88686 0.92294 0.89604 1.19620 1.27894 1.04514 0.95982 0.90044 1.25979 0.95961 0.97560 0.94882 1.69813 1.34925 1.37463 0.98810 0.86323 0.80585 0.80708 0.79256 1.19399 1.20024 1.18348 1.19430 1.00872 0.96192 1.03781 1.20401 0.98418 0.98469 0.96851 1.20173 0.98132 0.92864 0.97042 1.21175 0.93700 0.96986 1.02309 0.91760 0.92153 0.91857 0.87176 0.86976 0.91833 0.92945 0.90392 0.89344 0.86533 0.90693 0.94080 0.94394 0.92051 0.89435 0.86529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.31 10.01 36.01 0.36 -0.95 16 2 C -0.10 -1.48 5.87 -104.68 -0.61 -2.10 16 3 C -0.15 -2.17 9.69 -39.47 -0.38 -2.55 16 4 C -0.12 -1.83 9.69 -39.64 -0.38 -2.22 16 5 C -0.10 -1.74 5.87 -104.22 -0.61 -2.36 16 6 C -0.11 -1.79 8.45 36.01 0.30 -1.48 16 7 C 0.02 0.31 5.47 -104.89 -0.57 -0.26 16 8 C -0.20 -4.34 4.74 -104.63 -0.50 -4.83 16 9 C -0.08 -1.79 7.84 -39.66 -0.31 -2.10 16 10 C -0.17 -4.24 8.61 -39.28 -0.34 -4.58 16 11 C 0.12 3.12 5.56 -106.80 -0.59 2.53 16 12 C -0.45 -11.45 8.09 -37.86 -0.31 -11.76 16 13 H 0.08 1.98 6.88 -52.48 -0.36 1.62 16 14 C 0.08 1.82 5.16 -17.33 -0.09 1.73 16 15 N -0.79 -19.72 10.97 55.55 0.61 -19.11 16 16 Si 0.91 18.02 29.59 -169.99 -5.03 12.99 16 17 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 18 H -0.28 -5.37 7.11 56.52 0.40 -4.96 16 19 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 20 C -0.20 -4.78 5.90 -104.32 -0.62 -5.40 16 21 C -0.08 -1.73 9.40 36.00 0.34 -1.39 16 22 C -0.06 -1.44 9.07 -39.66 -0.36 -1.80 16 23 C -0.12 -2.23 9.15 -39.18 -0.36 -2.59 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 26 H 0.06 0.73 8.08 -51.93 -0.42 0.31 16 27 H 0.11 1.34 8.06 -52.48 -0.42 0.92 16 28 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 29 H 0.06 1.00 7.50 -51.93 -0.39 0.61 16 30 H 0.05 0.73 8.09 -51.93 -0.42 0.31 16 31 H 0.08 1.43 6.47 -51.93 -0.34 1.09 16 32 H 0.09 1.90 6.86 -52.48 -0.36 1.54 16 33 H 0.12 3.04 6.23 -52.49 -0.33 2.71 16 34 H 0.28 6.44 8.30 -40.82 -0.34 6.11 16 35 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.04 0.69 8.08 -51.93 -0.42 0.27 16 37 H 0.06 1.27 6.77 -51.93 -0.35 0.92 16 38 H 0.09 1.81 8.03 -52.48 -0.42 1.39 16 39 H 0.12 2.06 8.04 -52.49 -0.42 1.64 16 LS Contribution 320.28 15.07 4.83 4.83 Total: -1.00 -26.53 320.28 -10.10 -36.63 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -5.47 Total: 6.77 kcal Atomic # 6 Polarization: -37.07 SS G_CDS: -5.03 Total: -42.10 kcal Atomic # 7 Polarization: -19.72 SS G_CDS: 0.61 Total: -19.11 kcal Atomic # 14 Polarization: 18.02 SS G_CDS: -5.03 Total: 12.99 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -26.53 -10.10 -36.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241192766.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.315 kcal (2) G-P(sol) polarization free energy of solvation -26.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds