Wall clock time and date at job start Mon Mar 30 2020 19:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47326 * 2 1 4 4 H 1.09002 * 109.46785 * 305.00415 * 3 2 1 5 5 N 1.46505 * 109.47021 * 64.99936 * 3 2 1 6 6 C 1.39983 * 120.00071 * 205.00467 * 5 3 2 7 7 C 1.40438 * 125.97843 * 359.97438 * 6 5 3 8 8 C 1.35243 * 107.86249 * 180.02562 * 7 6 5 9 9 C 1.50701 * 126.06543 * 180.02562 * 8 7 6 10 10 N 1.34956 * 107.86538 * 0.02562 * 8 7 6 11 11 C 1.46506 * 125.97079 * 179.97438 * 10 8 7 12 12 C 1.50703 * 109.46877 * 90.00141 * 11 10 8 13 13 H 1.08005 * 119.99817 * 0.02562 * 12 11 10 14 14 C 1.37871 * 120.00081 * 179.97438 * 12 11 10 15 15 N 1.31510 * 120.00254 * 180.02562 * 14 12 11 16 16 Si 1.86811 * 119.99850 * 0.02562 * 14 12 11 17 17 H 1.48503 * 109.46778 * 89.99559 * 16 14 12 18 18 H 1.48493 * 109.46886 * 209.99446 * 16 14 12 19 19 H 1.48492 * 109.47026 * 329.99859 * 16 14 12 20 20 N 1.31220 * 125.98048 * 180.28787 * 6 5 3 21 21 C 1.50694 * 109.47399 * 185.00192 * 3 2 1 22 22 N 1.34771 * 120.00285 * 59.99863 * 21 3 2 23 23 O 1.21280 * 119.99866 * 240.00066 * 21 3 2 24 24 H 1.09000 * 109.46945 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46863 * 299.99733 * 1 2 3 26 26 H 1.08996 * 109.47503 * 59.99937 * 1 2 3 27 27 H 1.08997 * 109.47378 * 239.99720 * 2 1 3 28 28 H 1.09005 * 109.47265 * 120.00164 * 2 1 3 29 29 H 0.96998 * 120.00218 * 24.99897 * 5 3 2 30 30 H 1.07997 * 126.06563 * 0.02562 * 7 6 5 31 31 H 1.08999 * 109.46996 * 269.97736 * 9 8 7 32 32 H 1.08998 * 109.47261 * 29.97461 * 9 8 7 33 33 H 1.08994 * 109.47134 * 149.97996 * 9 8 7 34 34 H 1.09000 * 109.46803 * 209.99620 * 11 10 8 35 35 H 1.09000 * 109.47214 * 330.00413 * 11 10 8 36 36 H 0.97008 * 120.00053 * 180.02562 * 15 14 12 37 37 H 0.96998 * 120.00244 * 0.02562 * 22 21 3 38 38 H 0.96996 * 120.00051 * 180.02562 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6053 1.9815 -0.8418 5 7 1.6525 2.0974 1.2518 6 6 1.5207 3.4902 1.3015 7 6 1.7289 4.3772 0.2328 8 6 1.5026 5.6316 0.6847 9 6 1.6091 6.8987 -0.1240 10 7 1.1646 5.5473 1.9886 11 6 0.8369 6.6729 2.8672 12 6 -0.6444 6.9431 2.8060 13 1 -1.2784 6.3367 2.1760 14 6 -1.1905 7.9637 3.5550 15 7 -2.4833 8.1992 3.5021 16 14 -0.0940 9.0121 4.6452 17 1 0.4021 10.1790 3.8722 18 1 -0.8717 9.4889 5.8169 19 1 1.0591 8.2017 5.1128 20 7 1.1866 4.1958 2.3561 21 6 3.5419 1.4443 -0.1239 22 7 4.1297 0.8911 -1.2031 23 8 4.2216 1.9435 0.7477 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 1.4871 1.5661 2.0463 30 1 2.0183 4.1057 -0.7717 31 1 2.6248 7.2886 -0.0566 32 1 1.3702 6.6859 -1.1660 33 1 0.9096 7.6383 0.2654 34 1 1.1197 6.4288 3.8911 35 1 1.3816 7.5589 2.5411 36 1 -2.8674 8.9176 4.0288 37 1 3.5861 0.4921 -1.9004 38 1 5.0964 0.8920 -1.2826 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270980607.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:21:55 Heat of formation + Delta-G solvation = 35.111575 kcal Electronic energy + Delta-G solvation = -20223.613146 eV Core-core repulsion = 17102.610338 eV Total energy + Delta-G solvation = -3121.002809 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.148 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.42657 -39.55253 -36.17265 -34.06031 -33.42319 -32.47354 -31.13009 -30.68097 -27.46503 -26.67891 -25.87799 -22.54686 -22.30880 -20.68570 -19.68228 -18.87746 -17.61053 -17.03641 -16.89081 -16.07470 -15.36131 -14.85872 -14.52617 -14.49404 -14.23530 -13.76273 -13.66546 -13.24209 -12.69755 -12.50377 -12.37266 -12.18822 -12.17560 -11.79804 -11.48131 -11.35123 -11.13322 -11.07955 -10.73103 -10.45559 -10.03426 -9.74297 -9.66612 -9.57825 -9.17443 -8.72492 -7.75179 -6.99714 -6.20620 -4.22671 2.64495 2.88187 3.05807 3.19653 3.28354 3.30177 3.46776 3.86557 4.12990 4.27646 4.56768 4.75797 4.87169 5.08168 5.11330 5.37764 5.40582 5.48720 5.70692 5.76438 5.83813 5.98746 6.05122 6.14048 6.22276 6.33836 6.55933 6.61571 6.70045 6.80144 7.07061 7.21934 7.37749 7.68625 8.00678 8.17155 8.26828 8.41000 8.83873 8.90278 9.35803 10.91971 Molecular weight = 266.15amu Principal moments of inertia in cm(-1) A = 0.028774 B = 0.004531 C = 0.004281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.859976 B = 6178.409477 C = 6538.949646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C 0.157 3.843 4 H 0.104 0.896 5 N -0.700 5.700 6 C 0.324 3.676 7 C -0.330 4.330 8 C 0.110 3.890 9 C -0.092 4.092 10 N -0.325 5.325 11 C 0.233 3.767 12 C -0.537 4.537 13 H 0.080 0.920 14 C 0.078 3.922 15 N -0.889 5.889 16 Si 0.871 3.129 17 H -0.271 1.271 18 H -0.280 1.280 19 H -0.263 1.263 20 N -0.342 5.342 21 C 0.492 3.508 22 N -0.862 5.862 23 O -0.521 6.521 24 H 0.057 0.943 25 H 0.065 0.935 26 H 0.058 0.942 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.402 0.598 30 H 0.126 0.874 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.048 0.952 35 H 0.042 0.958 36 H 0.268 0.732 37 H 0.398 0.602 38 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.662 -14.117 -12.322 21.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C 0.045 3.955 4 H 0.122 0.878 5 N -0.341 5.341 6 C 0.068 3.932 7 C -0.363 4.363 8 C -0.022 4.022 9 C -0.150 4.150 10 N -0.104 5.104 11 C 0.114 3.886 12 C -0.575 4.575 13 H 0.099 0.901 14 C -0.126 4.126 15 N -0.526 5.526 16 Si 0.697 3.303 17 H -0.197 1.197 18 H -0.206 1.206 19 H -0.188 1.188 20 N -0.173 5.173 21 C 0.274 3.726 22 N -0.427 5.427 23 O -0.395 6.395 24 H 0.076 0.924 25 H 0.084 0.916 26 H 0.078 0.922 27 H 0.097 0.903 28 H 0.091 0.909 29 H 0.238 0.762 30 H 0.144 0.856 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.078 0.922 37 H 0.226 0.774 38 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 9.448 -13.473 -10.370 19.451 hybrid contribution 0.786 0.227 -0.384 0.904 sum 10.234 -13.247 -10.754 19.896 Atomic orbital electron populations 1.21759 0.94055 1.01802 1.03289 1.21745 0.97706 0.93574 1.03195 1.20648 0.89854 0.95005 0.89989 0.87803 1.42881 1.78877 1.01162 1.11190 1.18929 0.97032 0.84717 0.92504 1.20356 1.25124 0.91031 0.99775 1.20797 0.98644 0.96457 0.86336 1.20405 1.02576 0.93510 0.98539 1.48393 1.50127 1.04606 1.07319 1.19903 0.97913 0.80906 0.89912 1.21214 0.90284 1.17369 1.28663 0.90143 1.24804 0.95014 0.96710 0.96025 1.69878 1.10834 1.31121 1.40807 0.86916 0.81182 0.81152 0.81010 1.19674 1.20561 1.18765 1.77346 1.31649 0.87578 1.20751 1.21820 0.92319 0.77042 0.81433 1.43981 1.11225 1.63328 1.24171 1.90775 1.65407 1.43367 1.39937 0.92421 0.91578 0.92247 0.90335 0.90884 0.76233 0.85646 0.91216 0.90675 0.89860 0.93367 0.94028 0.92225 0.77404 0.77280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.80 37.16 0.36 -0.90 16 2 C -0.12 -0.96 5.42 -26.73 -0.14 -1.10 16 3 C 0.16 1.78 2.37 -69.08 -0.16 1.62 16 4 H 0.10 1.11 7.14 -51.93 -0.37 0.74 16 5 N -0.70 -11.10 4.25 -54.70 -0.23 -11.33 16 6 C 0.32 6.67 8.06 -154.55 -1.25 5.42 16 7 C -0.33 -6.46 9.83 -39.82 -0.39 -6.85 16 8 C 0.11 2.31 6.92 -82.29 -0.57 1.74 16 9 C -0.09 -1.54 9.89 36.01 0.36 -1.18 16 10 N -0.32 -7.87 3.59 -58.32 -0.21 -8.08 16 11 C 0.23 5.87 4.88 -5.19 -0.03 5.84 16 12 C -0.54 -15.40 9.94 -34.44 -0.34 -15.74 16 13 H 0.08 2.59 8.06 -52.48 -0.42 2.17 16 14 C 0.08 2.22 5.47 -17.82 -0.10 2.13 16 15 N -0.89 -26.80 13.96 55.43 0.77 -26.03 16 16 Si 0.87 20.71 27.47 -169.99 -4.67 16.04 16 17 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.26 -6.07 6.54 56.52 0.37 -5.70 16 20 N -0.34 -8.31 12.59 31.41 0.40 -7.91 16 21 C 0.49 6.14 7.47 -10.99 -0.08 6.05 16 22 N -0.86 -6.35 8.73 31.22 0.27 -6.08 16 23 O -0.52 -9.47 17.20 5.56 0.10 -9.37 16 24 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.07 0.69 7.75 -51.93 -0.40 0.29 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.08 0.38 7.43 -51.93 -0.39 0.00 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.40 6.12 8.73 -40.82 -0.36 5.76 16 30 H 0.13 2.07 7.45 -52.49 -0.39 1.68 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.08 1.51 7.71 -51.93 -0.40 1.11 16 34 H 0.05 1.24 7.20 -51.93 -0.37 0.87 16 35 H 0.04 0.97 7.07 -51.93 -0.37 0.60 16 36 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 37 H 0.40 1.54 8.19 -40.82 -0.33 1.21 16 38 H 0.40 2.66 8.93 -40.82 -0.36 2.30 16 LS Contribution 323.28 15.07 4.87 4.87 Total: -1.00 -36.79 323.28 -6.50 -43.28 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -5.45 Total: 7.58 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: -2.34 Total: -2.97 kcal Atomic # 7 Polarization: -60.43 SS G_CDS: 1.00 Total: -59.43 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.10 Total: -9.37 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -4.67 Total: 16.04 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -36.79 -6.50 -43.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270980607.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.396 kcal (2) G-P(sol) polarization free energy of solvation -36.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds