Wall clock time and date at job start Mon Mar 30 2020 19:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47326 * 2 1 4 4 H 1.09002 * 109.46785 * 305.00415 * 3 2 1 5 5 N 1.46505 * 109.47021 * 64.99936 * 3 2 1 6 6 C 1.39983 * 120.00071 * 205.00467 * 5 3 2 7 7 C 1.40438 * 125.97843 * 359.97438 * 6 5 3 8 8 C 1.35243 * 107.86249 * 180.02562 * 7 6 5 9 9 C 1.50701 * 126.06543 * 180.02562 * 8 7 6 10 10 N 1.34956 * 107.86538 * 0.02562 * 8 7 6 11 11 C 1.46506 * 125.97079 * 179.97438 * 10 8 7 12 12 C 1.50703 * 109.46877 * 90.00141 * 11 10 8 13 13 H 1.08005 * 119.99817 * 0.02562 * 12 11 10 14 14 C 1.37871 * 120.00081 * 179.97438 * 12 11 10 15 15 N 1.31510 * 120.00254 * 180.02562 * 14 12 11 16 16 Si 1.86811 * 119.99850 * 0.02562 * 14 12 11 17 17 H 1.48503 * 109.46778 * 89.99559 * 16 14 12 18 18 H 1.48493 * 109.46886 * 209.99446 * 16 14 12 19 19 H 1.48492 * 109.47026 * 329.99859 * 16 14 12 20 20 N 1.31220 * 125.98048 * 180.28787 * 6 5 3 21 21 C 1.50694 * 109.47399 * 185.00192 * 3 2 1 22 22 N 1.34771 * 120.00285 * 59.99863 * 21 3 2 23 23 O 1.21280 * 119.99866 * 240.00066 * 21 3 2 24 24 H 1.09000 * 109.46945 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46863 * 299.99733 * 1 2 3 26 26 H 1.08996 * 109.47503 * 59.99937 * 1 2 3 27 27 H 1.08997 * 109.47378 * 239.99720 * 2 1 3 28 28 H 1.09005 * 109.47265 * 120.00164 * 2 1 3 29 29 H 0.96998 * 120.00218 * 24.99897 * 5 3 2 30 30 H 1.07997 * 126.06563 * 0.02562 * 7 6 5 31 31 H 1.08999 * 109.46996 * 269.97736 * 9 8 7 32 32 H 1.08998 * 109.47261 * 29.97461 * 9 8 7 33 33 H 1.08994 * 109.47134 * 149.97996 * 9 8 7 34 34 H 1.09000 * 109.46803 * 209.99620 * 11 10 8 35 35 H 1.09000 * 109.47214 * 330.00413 * 11 10 8 36 36 H 0.97008 * 120.00053 * 180.02562 * 15 14 12 37 37 H 0.96998 * 120.00244 * 0.02562 * 22 21 3 38 38 H 0.96996 * 120.00051 * 180.02562 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6053 1.9815 -0.8418 5 7 1.6525 2.0974 1.2518 6 6 1.5207 3.4902 1.3015 7 6 1.7289 4.3772 0.2328 8 6 1.5026 5.6316 0.6847 9 6 1.6091 6.8987 -0.1240 10 7 1.1646 5.5473 1.9886 11 6 0.8369 6.6729 2.8672 12 6 -0.6444 6.9431 2.8060 13 1 -1.2784 6.3367 2.1760 14 6 -1.1905 7.9637 3.5550 15 7 -2.4833 8.1992 3.5021 16 14 -0.0940 9.0121 4.6452 17 1 0.4021 10.1790 3.8722 18 1 -0.8717 9.4889 5.8169 19 1 1.0591 8.2017 5.1128 20 7 1.1866 4.1958 2.3561 21 6 3.5419 1.4443 -0.1239 22 7 4.1297 0.8911 -1.2031 23 8 4.2216 1.9435 0.7477 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 1.4871 1.5661 2.0463 30 1 2.0183 4.1057 -0.7717 31 1 2.6248 7.2886 -0.0566 32 1 1.3702 6.6859 -1.1660 33 1 0.9096 7.6383 0.2654 34 1 1.1197 6.4288 3.8911 35 1 1.3816 7.5589 2.5411 36 1 -2.8674 8.9176 4.0288 37 1 3.5861 0.4921 -1.9004 38 1 5.0964 0.8920 -1.2826 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270980607.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:21:55 Heat of formation + Delta-G solvation = 5.591170 kcal Electronic energy + Delta-G solvation = -20224.893247 eV Core-core repulsion = 17102.610338 eV Total energy + Delta-G solvation = -3122.282910 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.96591 -40.62841 -37.29452 -35.60909 -34.76268 -33.87955 -32.72189 -32.13129 -28.93995 -28.12654 -27.27757 -24.40002 -23.16559 -21.84191 -21.09581 -20.35755 -19.20765 -18.48058 -17.89655 -17.44511 -16.91105 -16.31807 -15.90888 -15.59852 -15.55976 -15.07527 -14.94558 -14.65607 -14.38157 -13.81504 -13.70528 -13.65329 -13.29883 -13.21227 -12.94334 -12.74963 -12.54293 -12.23120 -12.07733 -11.83892 -11.82301 -11.36979 -11.21256 -10.88765 -10.59813 -10.57035 -9.37252 -8.52387 -8.39777 -6.50063 1.25727 1.33031 1.35424 1.46457 1.65887 1.71239 2.18223 2.26597 2.60525 2.84167 2.92103 3.78274 3.88011 4.02301 4.13392 4.21110 4.39587 4.53557 4.56932 4.64515 4.75445 4.79502 4.83618 4.89657 5.04627 5.09754 5.17149 5.25398 5.30767 5.46610 5.55408 5.97673 6.01099 6.27898 6.47171 6.55762 6.59496 6.72767 7.14069 7.31538 7.45799 8.76479 Molecular weight = 266.15amu Principal moments of inertia in cm(-1) A = 0.028774 B = 0.004531 C = 0.004281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.859976 B = 6178.409477 C = 6538.949646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.114 4.114 3 C 0.151 3.849 4 H 0.117 0.883 5 N -0.696 5.696 6 C 0.327 3.673 7 C -0.330 4.330 8 C 0.097 3.903 9 C -0.089 4.089 10 N -0.356 5.356 11 C 0.245 3.755 12 C -0.546 4.546 13 H 0.025 0.975 14 C 0.023 3.977 15 N -0.937 5.937 16 Si 0.948 3.052 17 H -0.248 1.248 18 H -0.276 1.276 19 H -0.252 1.252 20 N -0.402 5.402 21 C 0.493 3.507 22 N -0.833 5.833 23 O -0.586 6.586 24 H 0.075 0.925 25 H 0.035 0.965 26 H 0.062 0.938 27 H 0.120 0.880 28 H 0.071 0.929 29 H 0.401 0.599 30 H 0.159 0.841 31 H 0.095 0.905 32 H 0.105 0.895 33 H 0.063 0.937 34 H 0.038 0.962 35 H 0.066 0.934 36 H 0.273 0.727 37 H 0.419 0.581 38 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.609 -14.734 -14.206 23.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.152 4.152 3 C 0.041 3.959 4 H 0.135 0.865 5 N -0.336 5.336 6 C 0.070 3.930 7 C -0.362 4.362 8 C -0.033 4.033 9 C -0.146 4.146 10 N -0.136 5.136 11 C 0.124 3.876 12 C -0.584 4.584 13 H 0.043 0.957 14 C -0.177 4.177 15 N -0.576 5.576 16 Si 0.770 3.230 17 H -0.172 1.172 18 H -0.201 1.201 19 H -0.176 1.176 20 N -0.234 5.234 21 C 0.276 3.724 22 N -0.398 5.398 23 O -0.465 6.465 24 H 0.094 0.906 25 H 0.054 0.946 26 H 0.081 0.919 27 H 0.138 0.862 28 H 0.089 0.911 29 H 0.237 0.763 30 H 0.177 0.823 31 H 0.113 0.887 32 H 0.124 0.876 33 H 0.082 0.918 34 H 0.056 0.944 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.251 0.749 38 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 11.406 -14.165 -12.364 21.991 hybrid contribution 0.131 0.213 0.037 0.253 sum 11.537 -13.952 -12.327 21.902 Atomic orbital electron populations 1.21751 0.94488 1.02622 1.01993 1.21775 0.97123 0.91179 1.05097 1.21045 0.89596 0.96953 0.88300 0.86525 1.43206 1.78048 0.99434 1.12958 1.19387 0.95026 0.86602 0.92020 1.20743 1.24359 0.90266 1.00849 1.21642 0.97466 0.98722 0.85499 1.20539 1.03602 0.91160 0.99348 1.48271 1.52530 1.04343 1.08491 1.19612 0.95465 0.82436 0.90075 1.21265 0.91952 1.16988 1.28217 0.95652 1.25788 0.96565 0.97973 0.97345 1.70029 1.13160 1.32228 1.42137 0.85712 0.79083 0.79502 0.78751 1.17161 1.20125 1.17628 1.77221 1.34748 0.88257 1.23218 1.21881 0.92377 0.76509 0.81617 1.43704 1.11955 1.61208 1.22962 1.90763 1.66574 1.46642 1.42504 0.90573 0.94560 0.91865 0.86232 0.91051 0.76347 0.82346 0.88661 0.87617 0.91768 0.94417 0.91597 0.91741 0.74905 0.76375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.80 71.98 0.71 -1.52 16 2 C -0.11 -1.44 5.42 30.59 0.17 -1.27 16 3 C 0.15 3.13 2.37 44.24 0.11 3.23 16 4 H 0.12 2.14 7.14 -2.39 -0.02 2.12 16 5 N -0.70 -22.03 4.25 -326.97 -1.39 -23.42 16 6 C 0.33 13.61 8.06 133.39 1.08 14.68 16 7 C -0.33 -12.61 9.83 22.11 0.22 -12.39 16 8 C 0.10 4.06 6.92 41.39 0.29 4.35 16 9 C -0.09 -2.82 9.89 71.24 0.70 -2.11 16 10 N -0.36 -17.70 3.59 -338.44 -1.22 -18.92 16 11 C 0.24 12.57 4.88 85.63 0.42 12.98 16 12 C -0.55 -32.67 9.94 25.60 0.25 -32.41 16 13 H 0.03 1.74 8.06 -2.91 -0.02 1.72 16 14 C 0.02 1.33 5.47 84.65 0.46 1.79 16 15 N -0.94 -58.23 13.96 21.44 0.30 -57.93 16 16 Si 0.95 42.79 27.47 68.60 1.88 44.67 16 17 H -0.25 -10.22 7.11 99.48 0.71 -9.52 16 18 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 19 H -0.25 -10.90 6.54 99.48 0.65 -10.25 16 20 N -0.40 -20.28 12.59 -54.54 -0.69 -20.97 16 21 C 0.49 11.26 7.47 87.66 0.66 11.91 16 22 N -0.83 -9.40 8.73 -173.54 -1.52 -10.91 16 23 O -0.59 -20.93 17.20 -3.03 -0.05 -20.98 16 24 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.04 0.75 7.75 -2.39 -0.02 0.73 16 26 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.12 0.57 7.43 -2.39 -0.02 0.56 16 28 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 29 H 0.40 12.54 8.73 -92.71 -0.81 11.73 16 30 H 0.16 4.79 7.45 -2.91 -0.02 4.77 16 31 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 32 H 0.11 2.67 8.14 -2.39 -0.02 2.65 16 33 H 0.06 2.29 7.71 -2.39 -0.02 2.27 16 34 H 0.04 1.98 7.20 -2.39 -0.02 1.97 16 35 H 0.07 3.02 7.07 -2.39 -0.02 3.00 16 36 H 0.27 15.62 8.31 -92.70 -0.77 14.85 16 37 H 0.42 1.32 8.19 -92.71 -0.76 0.56 16 38 H 0.40 4.14 8.93 -92.71 -0.83 3.32 16 Total: -1.00 -86.08 323.28 1.02 -85.06 By element: Atomic # 1 Polarization: 25.51 SS G_CDS: -1.35 Total: 24.16 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: 5.05 Total: -0.75 kcal Atomic # 7 Polarization: -127.65 SS G_CDS: -4.51 Total: -132.16 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: -0.05 Total: -20.98 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 1.88 Total: 44.67 kcal Total: -86.08 1.02 -85.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270980607.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.652 kcal (2) G-P(sol) polarization free energy of solvation -86.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds