Wall clock time and date at job start Mon Mar 30 2020 19:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36072 * 117.00160 * 2 1 4 4 C 1.38548 * 120.79951 * 359.71877 * 3 2 1 5 5 N 1.32521 * 119.22096 * 179.74721 * 4 3 2 6 6 C 1.32435 * 120.96878 * 0.56242 * 5 4 3 7 7 N 1.38548 * 119.12105 * 179.70702 * 6 5 4 8 8 C 1.46503 * 120.00400 * 179.97438 * 7 6 5 9 9 C 1.36975 * 119.99959 * 359.97438 * 7 6 5 10 10 H 1.08000 * 119.99596 * 20.88794 * 9 7 6 11 11 C 1.38794 * 120.00126 * 200.88426 * 9 7 6 12 12 N 1.31568 * 120.00113 * 14.17601 * 11 9 7 13 13 Si 1.86808 * 120.00078 * 194.16738 * 11 9 7 14 14 H 1.48497 * 109.46912 * 85.02105 * 13 11 9 15 15 H 1.48493 * 109.47006 * 205.02088 * 13 11 9 16 16 H 1.48495 * 109.46761 * 325.02304 * 13 11 9 17 17 N 1.32522 * 121.75961 * 359.69360 * 6 5 4 18 18 C 1.32800 * 120.66983 * 0.02562 * 17 6 5 19 19 N 1.38752 * 120.50839 * 179.97438 * 18 17 6 20 20 C 1.46495 * 120.00031 * 0.02562 * 19 18 17 21 21 C 1.53004 * 109.47140 * 155.00407 * 20 19 18 22 22 C 1.53006 * 109.47135 * 274.99806 * 20 19 18 23 23 H 1.08996 * 109.47528 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47325 * 60.00048 * 1 2 3 25 25 H 1.09005 * 109.47136 * 300.00042 * 1 2 3 26 26 H 1.08002 * 120.38636 * 0.02562 * 4 3 2 27 27 H 1.09004 * 109.46817 * 94.61528 * 8 7 6 28 28 H 1.08997 * 109.47382 * 214.61938 * 8 7 6 29 29 H 1.09002 * 109.46711 * 334.61911 * 8 7 6 30 30 H 0.97003 * 120.00172 * 179.97438 * 12 11 9 31 31 H 0.97005 * 119.99568 * 180.02562 * 19 18 17 32 32 H 1.09000 * 109.47288 * 35.00453 * 20 19 18 33 33 H 1.09000 * 109.46993 * 59.99865 * 21 20 19 34 34 H 1.08995 * 109.47282 * 179.97438 * 21 20 19 35 35 H 1.08997 * 109.47098 * 299.99869 * 21 20 19 36 36 H 1.09002 * 109.47120 * 179.97438 * 22 20 19 37 37 H 1.08991 * 109.47401 * 300.00196 * 22 20 19 38 38 H 1.09006 * 109.46629 * 60.00898 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0468 1.2124 0.0000 4 6 1.3085 2.3848 -0.0058 5 7 1.9425 3.5485 -0.0006 6 6 3.2657 3.6038 -0.0010 7 7 3.8888 4.8412 -0.0015 8 6 5.3515 4.9248 -0.0014 9 6 3.1374 5.9864 -0.0022 10 1 2.1105 5.9586 0.3312 11 6 3.6957 7.1825 -0.4312 12 7 4.8335 7.1779 -1.0918 13 14 2.8315 8.7990 -0.0709 14 1 3.2121 9.2724 1.2842 15 1 3.2341 9.8112 -1.0801 16 1 1.3614 8.5982 -0.1303 17 7 4.0096 2.5070 -0.0006 18 6 3.4446 1.3052 -0.0003 19 7 4.2267 0.1592 -0.0005 20 6 5.6875 0.2693 -0.0004 21 6 6.2943 -0.9962 0.6090 22 6 6.1867 0.4332 -1.4374 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 0.2291 2.3506 -0.0101 27 1 5.7096 5.0276 -1.0258 28 1 5.6659 5.7901 0.5820 29 1 5.7671 4.0188 0.4396 30 1 5.2235 8.0138 -1.3919 31 1 3.8061 -0.7150 -0.0007 32 1 5.9865 1.1359 0.5893 33 1 5.9953 -1.8628 0.0193 34 1 7.3812 -0.9145 0.6086 35 1 5.9387 -1.1130 1.6326 36 1 7.2736 0.5156 -1.4373 37 1 5.8877 -0.4334 -2.0270 38 1 5.7545 1.3348 -1.8715 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166800984.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:22:56 Heat of formation + Delta-G solvation = 19.625330 kcal Electronic energy + Delta-G solvation = -20710.758731 eV Core-core repulsion = 17589.084388 eV Total energy + Delta-G solvation = -3121.674343 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.148 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.68719 -39.20137 -38.29341 -37.19870 -34.16777 -33.80453 -31.81687 -29.80484 -28.50076 -28.05928 -27.87031 -25.83060 -24.21831 -22.94212 -21.75288 -19.65594 -18.98994 -18.43569 -17.90102 -16.99658 -16.71328 -16.17645 -16.03423 -15.58070 -15.33384 -15.26591 -14.75084 -14.51212 -14.27976 -13.83007 -13.27514 -13.04961 -13.02754 -13.00832 -12.67668 -12.60675 -12.58228 -12.29291 -12.16001 -12.07518 -11.91970 -11.71333 -11.53652 -11.12001 -10.45820 -9.56279 -9.40445 -8.35708 -8.11355 -5.73772 0.62439 0.83097 1.44036 1.49910 1.57171 2.14297 2.37809 2.60349 2.87348 2.93831 3.46036 3.69559 4.05201 4.19900 4.24809 4.28193 4.38938 4.46547 4.54832 4.70659 4.79518 4.79901 4.85366 4.91589 4.98979 5.00959 5.13983 5.28816 5.31812 5.41562 5.43230 5.57615 5.96646 6.11377 6.19982 6.62727 6.76606 7.00289 7.33076 7.52698 8.09751 8.74840 Molecular weight = 266.15amu Principal moments of inertia in cm(-1) A = 0.019502 B = 0.006156 C = 0.004835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.394631 B = 4547.592501 C = 5789.715528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.327 6.327 3 C -0.150 4.150 4 C 0.131 3.869 5 N -0.612 5.612 6 C 0.512 3.488 7 N -0.431 5.431 8 C 0.159 3.841 9 C -0.309 4.309 10 H 0.093 0.907 11 C -0.018 4.018 12 N -0.906 5.906 13 Si 1.000 3.000 14 H -0.269 1.269 15 H -0.279 1.279 16 H -0.267 1.267 17 N -0.624 5.624 18 C 0.458 3.542 19 N -0.698 5.698 20 C 0.146 3.854 21 C -0.147 4.147 22 C -0.153 4.153 23 H 0.121 0.879 24 H 0.050 0.950 25 H 0.052 0.948 26 H 0.178 0.822 27 H 0.035 0.965 28 H 0.048 0.952 29 H 0.053 0.947 30 H 0.270 0.730 31 H 0.417 0.583 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.059 0.941 36 H 0.077 0.923 37 H 0.063 0.937 38 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.450 -14.975 2.333 15.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.240 6.240 3 C -0.209 4.209 4 C -0.034 4.034 5 N -0.342 5.342 6 C 0.157 3.843 7 N -0.130 5.130 8 C 0.016 3.984 9 C -0.438 4.438 10 H 0.111 0.889 11 C -0.219 4.219 12 N -0.545 5.545 13 Si 0.823 3.177 14 H -0.195 1.195 15 H -0.204 1.204 16 H -0.192 1.192 17 N -0.361 5.361 18 C 0.208 3.792 19 N -0.335 5.335 20 C 0.041 3.959 21 C -0.205 4.205 22 C -0.212 4.212 23 H 0.139 0.861 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.195 0.805 27 H 0.054 0.946 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.255 0.745 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.104 0.896 35 H 0.078 0.922 36 H 0.096 0.904 37 H 0.082 0.918 38 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -0.456 -13.822 2.250 14.011 hybrid contribution -1.065 0.164 -0.157 1.089 sum -1.521 -13.658 2.093 13.900 Atomic orbital electron populations 1.23127 0.77697 1.04936 1.01147 1.85835 1.22088 1.24328 1.91797 1.19330 0.91748 0.87162 1.22618 1.23014 1.00591 0.85979 0.93864 1.67817 1.09133 1.28979 1.28258 1.19182 0.85279 0.85897 0.93892 1.42292 1.05510 1.00402 1.64784 1.21040 0.78602 0.98589 1.00209 1.19846 0.97887 0.84653 1.41406 0.88887 1.26231 0.97746 1.02755 0.95154 1.70232 1.20330 1.28483 1.35440 0.84835 0.78418 0.76361 0.78061 1.19485 1.20400 1.19178 1.67309 1.39052 0.96420 1.33359 1.17848 0.85402 0.87142 0.88824 1.44448 1.05267 1.04146 1.79669 1.20910 0.78747 0.99691 0.96541 1.21989 1.01928 0.95673 1.00886 1.22110 1.01564 1.00819 0.96702 0.86056 0.93124 0.92934 0.80512 0.94645 0.93324 0.92890 0.92037 0.74455 0.92114 0.90793 0.89631 0.92160 0.90430 0.91787 0.95747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 9.84 113.37 1.12 1.65 16 2 O -0.33 -9.78 9.85 -94.36 -0.93 -10.71 16 3 C -0.15 -5.65 6.75 22.79 0.15 -5.49 16 4 C 0.13 5.29 10.30 84.66 0.87 6.16 16 5 N -0.61 -30.75 9.20 -197.77 -1.82 -32.57 16 6 C 0.51 27.00 8.14 261.43 2.13 29.13 16 7 N -0.43 -24.09 3.12 -547.66 -1.71 -25.80 16 8 C 0.16 8.24 8.74 127.77 1.12 9.36 16 9 C -0.31 -17.70 9.31 84.02 0.78 -16.92 16 10 H 0.09 5.43 7.30 -2.91 -0.02 5.41 16 11 C -0.02 -0.98 5.08 84.87 0.43 -0.55 16 12 N -0.91 -50.62 10.65 21.64 0.23 -50.39 16 13 Si 1.00 43.14 29.58 68.60 2.03 45.17 16 14 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 15 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 16 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 17 N -0.62 -29.25 7.95 -194.99 -1.55 -30.80 16 18 C 0.46 18.30 7.51 133.26 1.00 19.30 16 19 N -0.70 -21.48 5.21 -323.62 -1.69 -23.16 16 20 C 0.15 3.97 3.21 45.00 0.14 4.12 16 21 C -0.15 -2.67 9.38 71.98 0.68 -1.99 16 22 C -0.15 -4.14 9.50 71.98 0.68 -3.45 16 23 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 24 H 0.05 1.02 7.70 -2.39 -0.02 1.00 16 25 H 0.05 1.04 7.72 -2.38 -0.02 1.02 16 26 H 0.18 5.69 6.44 -2.91 -0.02 5.67 16 27 H 0.04 1.93 7.42 -2.39 -0.02 1.91 16 28 H 0.05 2.55 7.19 -2.39 -0.02 2.53 16 29 H 0.05 2.52 7.18 -2.39 -0.02 2.50 16 30 H 0.27 14.15 8.31 -92.71 -0.77 13.38 16 31 H 0.42 10.85 8.04 -92.70 -0.75 10.11 16 32 H 0.06 2.01 7.57 -2.39 -0.02 1.99 16 33 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16 Total: -1.00 -68.30 316.49 3.99 -64.31 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: 0.32 Total: 22.66 kcal Atomic # 6 Polarization: 32.20 SS G_CDS: 9.10 Total: 41.31 kcal Atomic # 7 Polarization: -156.20 SS G_CDS: -6.53 Total: -162.73 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: -0.93 Total: -10.71 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -68.30 3.99 -64.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166800984.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.935 kcal (2) G-P(sol) polarization free energy of solvation -68.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds