Wall clock time and date at job start Mon Mar 30 2020 19:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46649 * 2 1 4 4 H 1.09003 * 109.46961 * 55.00950 * 3 2 1 5 5 C 1.53006 * 109.46913 * 175.00223 * 3 2 1 6 6 N 1.46501 * 109.47157 * 175.00340 * 5 3 2 7 7 C 1.34769 * 119.99854 * 180.02562 * 6 5 3 8 8 O 1.21285 * 120.00559 * 359.97438 * 7 6 5 9 9 C 1.50699 * 120.00037 * 180.02562 * 7 6 5 10 10 C 1.50704 * 109.47511 * 179.97438 * 9 7 6 11 11 C 1.34664 * 126.58651 * 275.03761 * 10 9 7 12 12 N 1.34134 * 108.01786 * 179.74146 * 11 10 9 13 13 C 1.30496 * 109.25675 * 0.37372 * 12 11 10 14 14 N 1.35047 * 108.70161 * 359.62603 * 13 12 11 15 15 H 0.96997 * 126.40535 * 180.25138 * 14 13 12 16 16 N 1.46498 * 109.47652 * 295.00012 * 3 2 1 17 17 C 1.36936 * 119.99532 * 84.99988 * 16 3 2 18 18 H 1.07998 * 120.00141 * 0.02562 * 17 16 3 19 19 C 1.38816 * 119.99815 * 180.02562 * 17 16 3 20 20 N 1.31624 * 119.99977 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00026 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.46691 * 89.99895 * 21 19 17 23 23 H 1.48495 * 109.47017 * 209.99516 * 21 19 17 24 24 H 1.48494 * 109.47127 * 330.00181 * 21 19 17 25 25 H 1.08999 * 109.46613 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46633 * 299.99062 * 1 2 3 27 27 H 1.08994 * 109.47134 * 59.99541 * 1 2 3 28 28 H 1.09003 * 109.46988 * 240.01070 * 2 1 3 29 29 H 1.08993 * 109.47639 * 120.00601 * 2 1 3 30 30 H 1.08999 * 109.47235 * 55.00282 * 5 3 2 31 31 H 1.09002 * 109.47410 * 295.00654 * 5 3 2 32 32 H 0.96999 * 119.99913 * 359.97438 * 6 5 3 33 33 H 1.08992 * 109.47512 * 59.99585 * 9 7 6 34 34 H 1.09004 * 109.47075 * 299.99537 * 9 7 6 35 35 H 1.07998 * 125.99171 * 359.92955 * 11 10 9 36 36 H 1.08002 * 125.65353 * 179.89694 * 13 12 11 37 37 H 0.96993 * 120.00566 * 265.00386 * 16 3 2 38 38 H 0.96993 * 120.00181 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5648 1.4445 0.1257 6 7 4.0630 2.8170 0.0060 7 6 5.3856 3.0631 0.0858 8 8 6.1635 2.1485 0.2572 9 6 5.8980 4.4750 -0.0367 10 6 7.4000 4.4769 0.0869 11 6 8.1112 4.5081 1.2300 12 7 9.4134 4.4920 0.9090 13 6 9.5361 4.4601 -0.3898 14 7 8.3034 4.4465 -0.9410 15 1 8.0966 4.4198 -1.8883 16 7 1.6524 2.0976 -1.2517 17 6 0.4155 2.6735 -1.3686 18 1 -0.2741 2.6452 -0.5379 19 6 0.0480 3.2938 -2.5549 20 7 -1.1407 3.8478 -2.6671 21 14 1.2404 3.3422 -3.9919 22 1 1.0364 2.1438 -4.8449 23 1 0.9988 4.5679 -4.7946 24 1 2.6338 3.3531 -3.4788 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3632 0.5137 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5139 0.8898 30 1 3.9954 0.8313 -0.6660 31 1 3.8500 1.0377 1.0959 32 1 3.4409 3.5484 -0.1315 33 1 5.4679 5.0877 0.7554 34 1 5.6125 4.8823 -1.0067 35 1 7.7044 4.5375 2.2300 36 1 10.4690 4.4427 -0.9337 37 1 2.2717 2.1234 -1.9977 38 1 -1.3976 4.2809 -3.4961 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567978708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:24:52 Heat of formation + Delta-G solvation = 24.501345 kcal Electronic energy + Delta-G solvation = -19982.899843 eV Core-core repulsion = 16861.436940 eV Total energy + Delta-G solvation = -3121.462903 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.148 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.11459 -39.43959 -36.93296 -33.84890 -32.90475 -32.42097 -31.87451 -30.33552 -28.53046 -26.76607 -23.59114 -22.50536 -21.66369 -21.08446 -20.39584 -19.98029 -18.16384 -17.68084 -16.83621 -15.73969 -15.63855 -15.09066 -14.84506 -14.30089 -14.14820 -13.67596 -13.52451 -13.30079 -13.08094 -13.02252 -12.88902 -12.64753 -12.10402 -11.60750 -11.21253 -11.06686 -10.77058 -10.47830 -10.36566 -10.12366 -10.08700 -10.06761 -9.77041 -9.56458 -9.06187 -8.83015 -8.44280 -7.42424 -5.89018 -3.25267 1.91405 2.73981 2.98457 3.09908 3.23384 3.29158 3.35161 3.52914 4.46401 4.48246 4.70788 4.88900 5.01064 5.15130 5.25343 5.27959 5.37014 5.38968 5.55405 5.71350 5.83414 5.86032 6.00764 6.11491 6.22561 6.42127 6.47513 6.54158 6.65420 6.72767 6.88694 7.24080 7.26057 7.72923 7.86970 7.97558 8.29210 8.37886 9.07037 9.79246 9.98719 11.28674 Molecular weight = 266.15amu Principal moments of inertia in cm(-1) A = 0.021372 B = 0.004708 C = 0.004090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.818951 B = 5945.394089 C = 6844.916317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.133 4.133 3 C 0.168 3.832 4 H 0.063 0.937 5 C 0.112 3.888 6 N -0.716 5.716 7 C 0.508 3.492 8 O -0.542 6.542 9 C -0.069 4.069 10 C 0.000 4.000 11 C -0.010 4.010 12 N -0.495 5.495 13 C 0.182 3.818 14 N -0.563 5.563 15 H 0.418 0.582 16 N -0.747 5.747 17 C -0.243 4.243 18 H 0.095 0.905 19 C 0.008 3.992 20 N -0.930 5.930 21 Si 0.881 3.119 22 H -0.285 1.285 23 H -0.292 1.292 24 H -0.279 1.279 25 H 0.033 0.967 26 H 0.043 0.957 27 H 0.087 0.913 28 H 0.054 0.946 29 H 0.046 0.954 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.410 0.590 33 H 0.119 0.881 34 H 0.101 0.899 35 H 0.167 0.833 36 H 0.206 0.794 37 H 0.361 0.639 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.090 0.853 3.607 14.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.174 4.174 3 C 0.059 3.941 4 H 0.081 0.919 5 C -0.012 4.012 6 N -0.368 5.368 7 C 0.293 3.707 8 O -0.419 6.419 9 C -0.110 4.110 10 C -0.116 4.116 11 C -0.158 4.158 12 N -0.214 5.214 13 C -0.102 4.102 14 N -0.166 5.166 15 H 0.256 0.744 16 N -0.390 5.390 17 C -0.372 4.372 18 H 0.113 0.887 19 C -0.189 4.189 20 N -0.577 5.577 21 Si 0.712 3.288 22 H -0.212 1.212 23 H -0.219 1.219 24 H -0.206 1.206 25 H 0.052 0.948 26 H 0.062 0.938 27 H 0.106 0.894 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.247 0.753 33 H 0.137 0.863 34 H 0.119 0.881 35 H 0.184 0.816 36 H 0.223 0.777 37 H 0.194 0.806 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 15.051 0.302 4.391 15.681 hybrid contribution -0.354 0.283 -2.381 2.424 sum 14.697 0.585 2.010 14.845 Atomic orbital electron populations 1.21781 0.95172 0.99755 1.03777 1.22037 0.97378 0.97831 1.00122 1.20555 0.89831 0.93007 0.90753 0.91869 1.21721 0.95496 0.82564 1.01434 1.46004 1.07032 1.10904 1.72861 1.20431 0.82546 0.90724 0.77021 1.90717 1.55981 1.46260 1.48946 1.20068 0.89142 0.96023 1.05813 1.20503 0.91516 1.10949 0.88632 1.21999 0.88858 1.07155 0.97828 1.70254 1.19739 1.19471 1.11985 1.24888 0.88936 1.05895 0.90444 1.43207 1.07272 1.56511 1.09641 0.74446 1.42827 1.16806 1.67683 1.11721 1.19067 0.90625 1.27668 0.99890 0.88696 1.24660 0.96354 1.00361 0.97478 1.69686 1.19273 1.42053 1.26726 0.86622 0.80912 0.77353 0.83932 1.21191 1.21862 1.20583 0.94834 0.93835 0.89377 0.92715 0.93506 0.92037 0.91387 0.75322 0.86314 0.88096 0.81562 0.77721 0.80596 0.92986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 9.18 37.16 0.34 -2.23 16 2 C -0.13 -2.13 5.61 -26.73 -0.15 -2.28 16 3 C 0.17 2.83 2.59 -67.93 -0.18 2.66 16 4 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 5 C 0.11 1.71 5.23 -4.04 -0.02 1.69 16 6 N -0.72 -10.24 5.39 -60.29 -0.32 -10.56 16 7 C 0.51 7.26 7.82 -10.99 -0.09 7.18 16 8 O -0.54 -9.77 16.03 5.55 0.09 -9.68 16 9 C -0.07 -0.74 6.26 -29.03 -0.18 -0.92 16 10 C 0.00 0.00 5.73 -81.60 -0.47 -0.47 16 11 C -0.01 -0.14 11.79 -17.81 -0.21 -0.35 16 12 N -0.50 -6.90 11.25 -14.66 -0.16 -7.07 16 13 C 0.18 1.93 13.04 -90.37 -1.18 0.76 16 14 N -0.56 -5.73 6.15 -10.30 -0.06 -5.79 16 15 H 0.42 3.05 8.96 -40.82 -0.37 2.68 16 16 N -0.75 -15.28 4.31 -53.42 -0.23 -15.51 16 17 C -0.24 -6.02 8.23 -15.06 -0.12 -6.14 16 18 H 0.10 2.55 7.55 -52.49 -0.40 2.15 16 19 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16 20 N -0.93 -27.23 13.97 55.49 0.78 -26.46 16 21 Si 0.88 20.49 27.74 -169.99 -4.71 15.77 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.28 -6.01 6.52 56.52 0.37 -5.64 16 25 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.09 1.85 5.99 -51.93 -0.31 1.54 16 28 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.41 5.74 8.14 -40.82 -0.33 5.41 16 33 H 0.12 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.17 1.96 8.06 -52.49 -0.42 1.54 16 36 H 0.21 1.29 8.06 -52.49 -0.42 0.87 16 37 H 0.36 7.51 5.66 -40.82 -0.23 7.28 16 38 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 320.51 15.07 4.83 4.83 Total: -1.00 -33.06 320.51 -7.61 -40.67 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: -5.45 Total: 13.81 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: -2.35 Total: -0.01 kcal Atomic # 7 Polarization: -65.38 SS G_CDS: -0.01 Total: -65.39 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.09 Total: -9.68 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -4.71 Total: 15.77 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.06 -7.61 -40.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567978708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.170 kcal (2) G-P(sol) polarization free energy of solvation -33.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds