Wall clock time and date at job start Mon Mar 30 2020 19:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46902 * 111.00162 * 2 1 4 4 C 1.46904 * 111.00055 * 123.94917 * 2 1 3 5 5 H 1.08997 * 109.47384 * 289.05218 * 4 2 1 6 6 C 1.52998 * 109.47381 * 169.04651 * 4 2 1 7 7 N 1.46900 * 109.47033 * 61.69424 * 6 4 2 8 8 C 1.46895 * 111.00026 * 179.97438 * 7 6 4 9 9 C 1.50700 * 109.47127 * 179.97438 * 8 7 6 10 10 H 1.08000 * 120.00067 * 0.02562 * 9 8 7 11 11 C 1.37879 * 120.00111 * 179.97438 * 9 8 7 12 12 N 1.31515 * 120.00130 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 119.99899 * 0.02562 * 11 9 8 14 14 H 1.48497 * 109.47375 * 89.99706 * 13 11 9 15 15 H 1.48504 * 109.47026 * 210.00136 * 13 11 9 16 16 H 1.48498 * 109.46833 * 329.99478 * 13 11 9 17 17 C 1.50703 * 109.46908 * 49.04633 * 4 2 1 18 18 C 1.38244 * 119.97810 * 228.12569 * 17 4 2 19 19 C 1.38197 * 120.02826 * 180.02562 * 18 17 4 20 20 C 1.38454 * 119.97359 * 0.23491 * 19 18 17 21 21 F 1.35100 * 120.02784 * 179.72893 * 20 19 18 22 22 C 1.38466 * 119.94943 * 359.49067 * 20 19 18 23 23 C 1.38203 * 119.97053 * 0.52936 * 22 20 19 24 24 H 1.09000 * 109.46908 * 290.20829 * 1 2 3 25 25 H 1.08999 * 109.46973 * 50.21007 * 1 2 3 26 26 H 1.08999 * 109.47152 * 170.20705 * 1 2 3 27 27 H 1.09000 * 109.46896 * 199.39919 * 3 2 1 28 28 H 1.09001 * 109.46828 * 319.39263 * 3 2 1 29 29 H 1.08995 * 109.47607 * 79.39799 * 3 2 1 30 30 H 1.08998 * 109.47170 * 181.69084 * 6 4 2 31 31 H 1.08999 * 109.47146 * 301.69393 * 6 4 2 32 32 H 1.00907 * 110.99855 * 56.04313 * 7 6 4 33 33 H 1.08996 * 109.47376 * 300.00213 * 8 7 6 34 34 H 1.09002 * 109.47172 * 60.00588 * 8 7 6 35 35 H 0.96999 * 120.00256 * 180.02562 * 12 11 9 36 36 H 1.08005 * 119.98252 * 0.02562 * 18 17 4 37 37 H 1.08004 * 120.00981 * 179.97438 * 19 18 17 38 38 H 1.07997 * 120.01558 * 180.25892 * 22 20 19 39 39 H 1.07996 * 119.98520 * 179.74989 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7659 1.1377 5 1 1.8125 -0.2167 2.0612 6 6 3.5004 -0.9758 0.9586 7 7 4.1771 0.3279 0.9344 8 6 5.6270 0.1652 0.7640 9 6 6.2855 1.5206 0.7433 10 1 5.6868 2.4135 0.8467 11 6 7.6525 1.6208 0.5933 12 7 8.2272 2.8035 0.5757 13 14 8.6881 0.0764 0.4151 14 1 8.8059 -0.2775 -1.0223 15 1 10.0408 0.3199 0.9775 16 1 8.0409 -1.0409 1.1486 17 6 1.3060 -2.1043 1.2043 18 6 0.7944 -2.5588 2.4054 19 6 0.1625 -3.7863 2.4678 20 6 0.0461 -4.5631 1.3276 21 9 -0.5666 -5.7656 1.3885 22 6 0.5539 -4.1044 0.1238 23 6 1.1858 -2.8767 0.0640 24 1 -0.3633 0.3550 0.9644 25 1 -0.3633 0.6577 -0.7897 26 1 -0.3633 -1.0127 -0.1748 27 1 3.0306 1.3632 -0.3413 28 1 1.3973 1.9902 -0.6689 29 1 1.9492 1.7785 1.0100 30 1 3.8856 -1.5697 1.7874 31 1 3.6852 -1.4986 0.0202 32 1 3.9683 0.8592 1.7664 33 1 6.0267 -0.4206 1.5917 34 1 5.8270 -0.3498 -0.1756 35 1 9.1888 2.8740 0.4698 36 1 0.8887 -1.9543 3.2955 37 1 -0.2367 -4.1412 3.4064 38 1 0.4600 -4.7076 -0.7670 39 1 1.5855 -2.5205 -0.8739 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567678607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:25:01 Heat of formation + Delta-G solvation = -2.833085 kcal Electronic energy + Delta-G solvation = -20068.833020 eV Core-core repulsion = 16926.264846 eV Total energy + Delta-G solvation = -3142.568174 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.149 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.02203 -39.84673 -37.34227 -34.84783 -32.45906 -31.53779 -31.25872 -28.77874 -26.83596 -26.23460 -23.28007 -23.05690 -22.39620 -21.11733 -20.07818 -17.78959 -16.83037 -16.59797 -16.08917 -15.73418 -15.46158 -14.80595 -14.56199 -14.30376 -13.87743 -13.63410 -13.61603 -13.35053 -13.23792 -12.81165 -12.37196 -12.18853 -12.01922 -11.96114 -11.38910 -11.36628 -11.10256 -11.07344 -10.90447 -10.55063 -10.40951 -9.85649 -9.32658 -9.22459 -8.64415 -8.60267 -8.09744 -7.35541 -6.07916 -4.06101 0.99002 1.11026 3.28156 3.35445 3.37607 3.43336 4.12457 4.15345 4.40539 4.55618 4.63461 4.74370 5.12200 5.17556 5.24613 5.25884 5.36881 5.42148 5.47227 5.61830 5.78384 5.88883 5.93142 5.94596 5.97676 6.00584 6.08324 6.15242 6.27920 6.46423 6.74456 6.76564 6.91729 7.05370 7.31275 7.42970 7.57784 7.82746 8.24006 8.60896 8.99399 9.54154 11.05214 Molecular weight = 266.15amu Principal moments of inertia in cm(-1) A = 0.024654 B = 0.004325 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.466289 B = 6472.508360 C = 7205.595476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.527 5.527 3 C 0.021 3.979 4 C 0.128 3.872 5 H 0.047 0.953 6 C 0.067 3.933 7 N -0.670 5.670 8 C 0.162 3.838 9 C -0.516 4.516 10 H 0.079 0.921 11 C 0.069 3.931 12 N -0.900 5.900 13 Si 0.877 3.123 14 H -0.275 1.275 15 H -0.287 1.287 16 H -0.268 1.268 17 C -0.083 4.083 18 C -0.087 4.087 19 C -0.156 4.156 20 C 0.090 3.910 21 F -0.144 7.144 22 C -0.157 4.157 23 C -0.062 4.062 24 H 0.018 0.982 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.124 0.876 28 H 0.045 0.955 29 H 0.019 0.981 30 H 0.025 0.975 31 H 0.076 0.924 32 H 0.332 0.668 33 H -0.017 1.017 34 H 0.024 0.976 35 H 0.264 0.736 36 H 0.130 0.870 37 H 0.132 0.868 38 H 0.134 0.866 39 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.264 -11.712 1.713 20.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.251 5.251 3 C -0.127 4.127 4 C 0.019 3.981 5 H 0.064 0.936 6 C -0.063 4.063 7 N -0.300 5.300 8 C 0.034 3.966 9 C -0.554 4.554 10 H 0.097 0.903 11 C -0.133 4.133 12 N -0.539 5.539 13 Si 0.705 3.295 14 H -0.201 1.201 15 H -0.213 1.213 16 H -0.193 1.193 17 C -0.084 4.084 18 C -0.106 4.106 19 C -0.175 4.175 20 C 0.071 3.929 21 F -0.123 7.123 22 C -0.176 4.176 23 C -0.081 4.081 24 H 0.036 0.964 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.142 0.858 28 H 0.064 0.936 29 H 0.037 0.963 30 H 0.044 0.956 31 H 0.095 0.905 32 H 0.149 0.851 33 H 0.001 0.999 34 H 0.042 0.958 35 H 0.074 0.926 36 H 0.147 0.853 37 H 0.150 0.850 38 H 0.152 0.848 39 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -17.040 -11.777 0.591 20.722 hybrid contribution 0.461 -0.931 1.604 1.912 sum -16.580 -12.708 2.195 21.005 Atomic orbital electron populations 1.22489 0.88879 1.01821 0.99706 1.62046 1.06181 1.15579 1.41321 1.22864 1.04641 0.85885 0.99287 1.20659 0.94716 0.90009 0.92701 0.93557 1.21980 0.90642 0.92903 1.00785 1.60823 1.11507 1.14406 1.43273 1.20026 0.83636 0.97820 0.95103 1.21036 0.92240 0.92098 1.50010 0.90283 1.24898 0.97813 0.95796 0.94761 1.69896 1.10682 1.22790 1.50535 0.86831 0.79821 0.84084 0.78806 1.20111 1.21288 1.19317 1.19924 0.98514 0.96611 0.93327 1.20932 0.96652 0.95226 0.97785 1.21053 1.03092 0.95590 0.97752 1.17750 0.97890 0.82064 0.95180 1.91483 1.80833 1.42813 1.97191 1.21196 1.01536 0.98035 0.96850 1.21005 0.95838 0.91978 0.99256 0.96371 0.91774 0.91789 0.85784 0.93629 0.96261 0.95646 0.90533 0.85093 0.99898 0.95831 0.92646 0.85251 0.84981 0.84841 0.83971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 8.94 60.06 0.54 0.76 16 2 N -0.53 -7.20 4.51 -244.58 -1.10 -8.30 16 3 C 0.02 0.31 8.51 60.07 0.51 0.82 16 4 C 0.13 1.71 2.06 -68.86 -0.14 1.57 16 5 H 0.05 0.62 7.72 -51.93 -0.40 0.22 16 6 C 0.07 1.07 5.20 -3.83 -0.02 1.05 16 7 N -0.67 -12.78 3.06 -115.06 -0.35 -13.13 16 8 C 0.16 3.78 4.51 -4.98 -0.02 3.75 16 9 C -0.52 -14.28 9.87 -34.44 -0.34 -14.62 16 10 H 0.08 2.36 8.06 -52.49 -0.42 1.93 16 11 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 12 N -0.90 -27.27 13.96 55.43 0.77 -26.50 16 13 Si 0.88 21.35 27.47 -169.99 -4.67 16.68 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 15 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 16 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 17 C -0.08 -0.98 3.60 -104.62 -0.38 -1.35 16 18 C -0.09 -0.93 9.66 -39.59 -0.38 -1.31 16 19 C -0.16 -1.60 10.03 -39.52 -0.40 -2.00 16 20 C 0.09 1.01 7.30 -39.42 -0.29 0.72 16 21 F -0.14 -1.69 17.27 2.25 0.04 -1.65 16 22 C -0.16 -1.67 10.03 -39.51 -0.40 -2.07 16 23 C -0.06 -0.71 7.86 -39.59 -0.31 -1.02 16 24 H 0.02 0.20 8.12 -51.93 -0.42 -0.22 16 25 H 0.06 0.70 7.84 -51.93 -0.41 0.29 16 26 H 0.06 0.71 6.13 -51.93 -0.32 0.39 16 27 H 0.12 2.24 5.95 -51.93 -0.31 1.93 16 28 H 0.04 0.62 7.74 -51.93 -0.40 0.22 16 29 H 0.02 0.28 7.75 -51.93 -0.40 -0.12 16 30 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 1.27 8.06 -51.93 -0.42 0.85 16 32 H 0.33 6.19 8.50 -39.29 -0.33 5.85 16 33 H -0.02 -0.40 7.20 -51.93 -0.37 -0.77 16 34 H 0.02 0.56 7.57 -51.93 -0.39 0.17 16 35 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 36 H 0.13 1.17 7.98 -52.48 -0.42 0.76 16 37 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 38 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 39 H 0.14 1.62 7.96 -52.49 -0.42 1.20 16 LS Contribution 319.20 15.07 4.81 4.81 Total: -1.00 -29.20 319.20 -8.10 -37.30 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -5.88 Total: 2.60 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: -1.72 Total: -11.81 kcal Atomic # 7 Polarization: -47.25 SS G_CDS: -0.68 Total: -47.94 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.04 Total: -1.65 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.67 Total: 16.68 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.20 -8.10 -37.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567678607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.471 kcal (2) G-P(sol) polarization free energy of solvation -29.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds