Wall clock time and date at job start Mon Mar 30 2020 19:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46499 * 109.47396 * 2 1 4 4 C 1.35308 * 125.86944 * 124.99861 * 3 2 1 5 5 C 1.35347 * 106.17713 * 180.02562 * 4 3 2 6 6 C 1.50699 * 126.75484 * 179.97438 * 5 4 3 7 7 N 1.46897 * 109.47471 * 94.99625 * 6 5 4 8 8 C 1.47444 * 110.99809 * 69.87853 * 7 6 5 9 9 C 1.54319 * 107.23459 * 123.26049 * 8 7 6 10 10 C 1.55134 * 103.01800 * 22.27883 * 9 8 7 11 11 O 1.42906 * 110.99047 * 82.48272 * 10 9 8 12 12 C 1.50700 * 110.98917 * 206.25334 * 10 9 8 13 13 H 1.08009 * 119.99739 * 118.55109 * 12 10 9 14 14 C 1.37873 * 120.00390 * 298.55354 * 12 10 9 15 15 N 1.31514 * 119.99973 * 359.97438 * 14 12 10 16 16 Si 1.86800 * 120.00164 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47085 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47423 * 119.99558 * 16 14 12 19 19 H 1.48508 * 109.46893 * 239.99977 * 16 14 12 20 20 C 1.47844 * 111.00120 * 190.72017 * 7 6 5 21 21 N 1.33774 * 106.49812 * 0.02562 * 5 4 3 22 22 N 1.28637 * 108.88333 * 0.02562 * 21 5 4 23 23 H 1.08997 * 109.46939 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46828 * 299.99535 * 1 2 3 25 25 H 1.08993 * 109.47081 * 59.99645 * 1 2 3 26 26 H 1.09001 * 109.46828 * 240.00465 * 2 1 3 27 27 H 1.08993 * 109.47081 * 120.00355 * 2 1 3 28 28 H 1.07997 * 126.91159 * 0.02959 * 4 3 2 29 29 H 1.09003 * 109.47214 * 214.99889 * 6 5 4 30 30 H 1.09005 * 109.46937 * 334.99928 * 6 5 4 31 31 H 1.09004 * 109.88720 * 242.66532 * 8 7 6 32 32 H 1.09002 * 109.89004 * 3.84866 * 8 7 6 33 33 H 1.08996 * 110.70187 * 140.66936 * 9 8 7 34 34 H 1.09000 * 110.70063 * 263.72138 * 9 8 7 35 35 H 0.96699 * 114.00267 * 61.44352 * 11 10 9 36 36 H 0.96995 * 119.99994 * 180.02562 * 15 14 12 37 37 H 1.09001 * 110.37403 * 332.46530 * 20 7 6 38 38 H 1.08997 * 110.37558 * 94.80933 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8757 1.9190 0.8982 5 6 3.0534 3.2078 0.5249 6 6 3.9219 4.2328 1.2077 7 7 5.2379 4.2718 0.5561 8 6 5.1416 4.8555 -0.7945 9 6 6.1074 6.0582 -0.8426 10 6 7.1141 5.7438 0.2951 11 8 8.1277 4.8416 -0.1531 12 6 7.7246 7.0090 0.8406 13 1 7.5781 7.2760 1.8769 14 6 8.4699 7.8257 0.0170 15 7 8.6486 7.5003 -1.2447 16 14 9.2272 9.3936 0.6935 17 1 8.8810 9.5302 2.1311 18 1 10.7033 9.3355 0.5427 19 1 8.6986 10.5618 -0.0557 20 6 6.1973 5.0714 1.3472 21 7 2.3056 3.3931 -0.5687 22 7 1.7043 2.2922 -0.8533 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 3.3272 1.4202 1.7430 29 1 3.4516 5.2135 1.1357 30 1 4.0440 3.9645 2.2571 31 1 5.4333 4.1156 -1.5399 32 1 4.1216 5.1913 -0.9815 33 1 6.6162 6.1055 -1.8054 34 1 5.5749 6.9882 -0.6436 35 1 8.6657 5.1841 -0.8800 36 1 9.1733 8.0747 -1.8240 37 1 5.6713 5.8271 1.9305 38 1 6.7816 4.4245 2.0016 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119712708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:24:51 Heat of formation + Delta-G solvation = 55.505725 kcal Electronic energy + Delta-G solvation = -20369.036019 eV Core-core repulsion = 17248.917567 eV Total energy + Delta-G solvation = -3120.118452 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.148 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.10495 -38.28981 -35.68433 -34.62507 -32.07809 -31.74588 -30.89745 -29.12997 -27.98371 -25.75958 -24.78453 -23.91551 -21.85236 -20.81007 -19.70605 -19.46210 -17.37051 -16.90598 -16.40658 -15.22754 -14.87293 -14.84185 -14.77653 -14.35319 -13.94139 -13.78248 -13.06040 -12.79420 -12.49455 -12.41341 -12.14080 -11.87222 -11.59657 -11.36498 -11.18444 -11.12880 -10.90727 -10.64843 -10.61306 -10.35601 -10.17551 -9.96731 -9.72603 -9.19286 -8.98448 -8.54061 -7.99608 -7.53619 -6.15400 -4.23620 1.71355 2.35017 2.71630 3.24631 3.33142 3.37068 4.18104 4.33906 4.48703 4.52468 4.74047 4.86824 5.03178 5.13473 5.14941 5.23680 5.28626 5.58110 5.67666 5.83564 5.88992 6.03048 6.08668 6.28006 6.31295 6.33353 6.62453 6.66510 6.76305 6.97692 7.18754 7.50215 7.58075 7.72680 7.82206 7.89291 8.22955 8.67932 8.78859 9.44873 9.58088 10.91499 Molecular weight = 266.15amu Principal moments of inertia in cm(-1) A = 0.054373 B = 0.003826 C = 0.003806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.839124 B = 7316.597946 C = 7354.760805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.114 3.886 3 N -0.297 5.297 4 C -0.040 4.040 5 C 0.001 3.999 6 C 0.132 3.868 7 N -0.524 5.524 8 C 0.046 3.954 9 C -0.143 4.143 10 C 0.251 3.749 11 O -0.579 6.579 12 C -0.535 4.535 13 H 0.061 0.939 14 C 0.071 3.929 15 N -0.894 5.894 16 Si 0.899 3.101 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.283 1.283 20 C 0.060 3.940 21 N -0.261 5.261 22 N -0.093 5.093 23 H 0.080 0.920 24 H 0.063 0.937 25 H 0.074 0.926 26 H 0.097 0.903 27 H 0.104 0.896 28 H 0.188 0.812 29 H 0.050 0.950 30 H 0.085 0.915 31 H 0.058 0.942 32 H 0.048 0.952 33 H 0.075 0.925 34 H 0.055 0.945 35 H 0.376 0.624 36 H 0.265 0.735 37 H 0.048 0.952 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.885 -13.206 4.263 18.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.007 4.007 3 N -0.092 5.092 4 C -0.191 4.191 5 C -0.137 4.137 6 C 0.001 3.999 7 N -0.249 5.249 8 C -0.081 4.081 9 C -0.183 4.183 10 C 0.211 3.789 11 O -0.387 6.387 12 C -0.573 4.573 13 H 0.079 0.921 14 C -0.132 4.132 15 N -0.533 5.533 16 Si 0.727 3.273 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.210 1.210 20 C -0.067 4.067 21 N -0.129 5.129 22 N -0.072 5.072 23 H 0.099 0.901 24 H 0.082 0.918 25 H 0.093 0.907 26 H 0.115 0.885 27 H 0.122 0.878 28 H 0.205 0.795 29 H 0.068 0.932 30 H 0.103 0.897 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.094 0.906 34 H 0.073 0.927 35 H 0.225 0.775 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.732 -13.741 3.275 19.701 hybrid contribution 0.954 1.593 0.797 2.021 sum -12.778 -12.148 4.073 18.095 Atomic orbital electron populations 1.22072 0.92912 1.03457 1.04006 1.22023 0.96690 0.76929 1.05105 1.47381 1.31004 1.11760 1.19074 1.23335 1.00133 0.95585 1.00043 1.21943 1.00949 0.94787 0.96017 1.20440 0.88653 0.94335 0.96421 1.63605 1.05816 1.52341 1.03123 1.22816 0.98781 0.96474 0.90057 1.23249 0.97281 0.95146 1.02578 1.19537 0.84618 0.86360 0.88401 1.86132 1.49545 1.46172 1.56867 1.21582 1.32815 1.05884 0.97037 0.92065 1.25006 0.95459 0.97995 0.94701 1.69756 1.40081 1.38640 1.04827 0.86435 0.78958 0.82749 0.79207 1.19696 1.20858 1.20956 1.22993 0.92854 0.94512 0.96374 1.75066 1.08671 1.15853 1.13283 1.78212 1.21217 0.92950 1.14792 0.90088 0.91815 0.90685 0.88481 0.87816 0.79485 0.93169 0.89712 0.92360 0.93323 0.90606 0.92651 0.77464 0.92489 0.93356 0.91062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.00 10.04 37.16 0.37 -0.62 16 2 C 0.11 0.78 7.18 -4.04 -0.03 0.75 16 3 N -0.30 -3.62 3.44 -61.26 -0.21 -3.83 16 4 C -0.04 -0.51 11.50 -17.05 -0.20 -0.70 16 5 C 0.00 0.02 6.21 -82.78 -0.51 -0.49 16 6 C 0.13 2.19 5.11 -4.98 -0.03 2.16 16 7 N -0.52 -10.59 5.15 -232.69 -1.20 -11.78 16 8 C 0.05 1.00 6.39 -2.84 -0.02 0.99 16 9 C -0.14 -3.48 5.37 -24.91 -0.13 -3.61 16 10 C 0.25 6.37 0.87 -89.64 -0.08 6.29 16 11 O -0.58 -15.51 13.16 -35.23 -0.46 -15.97 16 12 C -0.53 -14.49 8.27 -34.44 -0.28 -14.77 16 13 H 0.06 1.64 7.79 -52.48 -0.41 1.23 16 14 C 0.07 1.90 5.29 -17.82 -0.09 1.80 16 15 N -0.89 -24.33 10.75 55.43 0.60 -23.73 16 16 Si 0.90 20.88 29.54 -169.99 -5.02 15.85 16 17 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 C 0.06 1.30 5.86 -2.30 -0.01 1.29 16 21 N -0.26 -4.72 11.83 33.29 0.39 -4.32 16 22 N -0.09 -1.47 12.91 60.35 0.78 -0.69 16 23 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 24 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.07 0.57 8.12 -51.93 -0.42 0.15 16 26 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.10 0.42 8.07 -51.93 -0.42 0.00 16 28 H 0.19 1.67 8.06 -52.49 -0.42 1.25 16 29 H 0.05 0.86 7.96 -51.93 -0.41 0.45 16 30 H 0.08 1.18 8.07 -51.93 -0.42 0.76 16 31 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.05 1.03 6.84 -51.93 -0.36 0.67 16 33 H 0.08 1.96 7.54 -51.93 -0.39 1.57 16 34 H 0.05 1.37 8.04 -51.93 -0.42 0.95 16 35 H 0.38 10.16 7.56 45.56 0.34 10.50 16 36 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 37 H 0.05 1.01 7.70 -51.93 -0.40 0.61 16 38 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 LS Contribution 314.93 15.07 4.75 4.75 Total: -1.00 -31.73 314.93 -6.37 -38.10 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -4.97 Total: 8.57 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: -1.01 Total: -6.92 kcal Atomic # 7 Polarization: -44.73 SS G_CDS: 0.36 Total: -44.37 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: -0.46 Total: -15.97 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.73 -6.37 -38.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119712708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.601 kcal (2) G-P(sol) polarization free energy of solvation -31.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds