Wall clock time and date at job start Mon Mar 30 2020 19:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46499 * 109.47396 * 2 1 4 4 C 1.35308 * 125.86944 * 124.99861 * 3 2 1 5 5 C 1.35347 * 106.17713 * 180.02562 * 4 3 2 6 6 C 1.50699 * 126.75484 * 179.97438 * 5 4 3 7 7 N 1.46897 * 109.47471 * 94.99625 * 6 5 4 8 8 C 1.47444 * 110.99809 * 69.87853 * 7 6 5 9 9 C 1.54319 * 107.23459 * 123.26049 * 8 7 6 10 10 C 1.55134 * 103.01800 * 22.27883 * 9 8 7 11 11 O 1.42906 * 110.99047 * 82.48272 * 10 9 8 12 12 C 1.50700 * 110.98917 * 206.25334 * 10 9 8 13 13 H 1.08009 * 119.99739 * 118.55109 * 12 10 9 14 14 C 1.37873 * 120.00390 * 298.55354 * 12 10 9 15 15 N 1.31514 * 119.99973 * 359.97438 * 14 12 10 16 16 Si 1.86800 * 120.00164 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47085 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47423 * 119.99558 * 16 14 12 19 19 H 1.48508 * 109.46893 * 239.99977 * 16 14 12 20 20 C 1.47844 * 111.00120 * 190.72017 * 7 6 5 21 21 N 1.33774 * 106.49812 * 0.02562 * 5 4 3 22 22 N 1.28637 * 108.88333 * 0.02562 * 21 5 4 23 23 H 1.08997 * 109.46939 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46828 * 299.99535 * 1 2 3 25 25 H 1.08993 * 109.47081 * 59.99645 * 1 2 3 26 26 H 1.09001 * 109.46828 * 240.00465 * 2 1 3 27 27 H 1.08993 * 109.47081 * 120.00355 * 2 1 3 28 28 H 1.07997 * 126.91159 * 0.02959 * 4 3 2 29 29 H 1.09003 * 109.47214 * 214.99889 * 6 5 4 30 30 H 1.09005 * 109.46937 * 334.99928 * 6 5 4 31 31 H 1.09004 * 109.88720 * 242.66532 * 8 7 6 32 32 H 1.09002 * 109.89004 * 3.84866 * 8 7 6 33 33 H 1.08996 * 110.70187 * 140.66936 * 9 8 7 34 34 H 1.09000 * 110.70063 * 263.72138 * 9 8 7 35 35 H 0.96699 * 114.00267 * 61.44352 * 11 10 9 36 36 H 0.96995 * 119.99994 * 180.02562 * 15 14 12 37 37 H 1.09001 * 110.37403 * 332.46530 * 20 7 6 38 38 H 1.08997 * 110.37558 * 94.80933 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8757 1.9190 0.8982 5 6 3.0534 3.2078 0.5249 6 6 3.9219 4.2328 1.2077 7 7 5.2379 4.2718 0.5561 8 6 5.1416 4.8555 -0.7945 9 6 6.1074 6.0582 -0.8426 10 6 7.1141 5.7438 0.2951 11 8 8.1277 4.8416 -0.1531 12 6 7.7246 7.0090 0.8406 13 1 7.5781 7.2760 1.8769 14 6 8.4699 7.8257 0.0170 15 7 8.6486 7.5003 -1.2447 16 14 9.2272 9.3936 0.6935 17 1 8.8810 9.5302 2.1311 18 1 10.7033 9.3355 0.5427 19 1 8.6986 10.5618 -0.0557 20 6 6.1973 5.0714 1.3472 21 7 2.3056 3.3931 -0.5687 22 7 1.7043 2.2922 -0.8533 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 3.3272 1.4202 1.7430 29 1 3.4516 5.2135 1.1357 30 1 4.0440 3.9645 2.2571 31 1 5.4333 4.1156 -1.5399 32 1 4.1216 5.1913 -0.9815 33 1 6.6162 6.1055 -1.8054 34 1 5.5749 6.9882 -0.6436 35 1 8.6657 5.1841 -0.8800 36 1 9.1733 8.0747 -1.8240 37 1 5.6713 5.8271 1.9305 38 1 6.7816 4.4245 2.0016 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119712708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:24:51 Heat of formation + Delta-G solvation = 30.596143 kcal Electronic energy + Delta-G solvation = -20370.116180 eV Core-core repulsion = 17248.917567 eV Total energy + Delta-G solvation = -3121.198613 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.148 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -44.15705 -40.05825 -36.90937 -36.06563 -34.15707 -33.12792 -31.69759 -30.69810 -29.84678 -27.37682 -25.78179 -25.42363 -22.98631 -21.98086 -21.37617 -21.19881 -19.01013 -18.15390 -17.40828 -16.97006 -16.82516 -16.22756 -15.95068 -15.64100 -15.43125 -14.95397 -14.34598 -14.28250 -13.85022 -13.63991 -13.35451 -13.16474 -13.10048 -12.91644 -12.77834 -12.63400 -12.41946 -12.28691 -12.19884 -12.12874 -11.81328 -11.50637 -11.10583 -10.95017 -10.59920 -10.16682 -10.02353 -9.16669 -8.19088 -6.35173 0.72205 1.41001 1.43791 1.50039 1.54890 1.59790 2.40113 3.05329 3.24508 3.47676 3.70554 3.93077 4.00646 4.04383 4.13112 4.20517 4.32296 4.34331 4.48845 4.51658 4.63413 4.75466 4.77400 4.82868 4.94992 5.03182 5.09601 5.15458 5.27815 5.29972 5.49463 5.55643 5.78984 5.81437 5.97257 6.24501 6.25361 6.71687 7.36308 7.46159 7.58203 8.86448 Molecular weight = 266.15amu Principal moments of inertia in cm(-1) A = 0.054373 B = 0.003826 C = 0.003806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.839124 B = 7316.597946 C = 7354.760805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.101 3.899 3 N -0.286 5.286 4 C -0.019 4.019 5 C -0.031 4.031 6 C 0.135 3.865 7 N -0.524 5.524 8 C 0.063 3.937 9 C -0.135 4.135 10 C 0.234 3.766 11 O -0.587 6.587 12 C -0.557 4.557 13 H 0.060 0.940 14 C 0.027 3.973 15 N -0.913 5.913 16 Si 0.962 3.038 17 H -0.267 1.267 18 H -0.280 1.280 19 H -0.281 1.281 20 C 0.069 3.931 21 N -0.306 5.306 22 N -0.120 5.120 23 H 0.111 0.889 24 H 0.057 0.943 25 H 0.051 0.949 26 H 0.107 0.893 27 H 0.143 0.857 28 H 0.231 0.769 29 H 0.040 0.960 30 H 0.118 0.882 31 H 0.044 0.956 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.043 0.957 35 H 0.370 0.630 36 H 0.267 0.733 37 H 0.058 0.942 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.405 -14.710 6.093 20.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.018 4.018 3 N -0.081 5.081 4 C -0.171 4.171 5 C -0.170 4.170 6 C 0.005 3.995 7 N -0.249 5.249 8 C -0.065 4.065 9 C -0.174 4.174 10 C 0.194 3.806 11 O -0.394 6.394 12 C -0.596 4.596 13 H 0.078 0.922 14 C -0.174 4.174 15 N -0.553 5.553 16 Si 0.787 3.213 17 H -0.191 1.191 18 H -0.205 1.205 19 H -0.207 1.207 20 C -0.059 4.059 21 N -0.173 5.173 22 N -0.099 5.099 23 H 0.130 0.870 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.125 0.875 27 H 0.161 0.839 28 H 0.248 0.752 29 H 0.058 0.942 30 H 0.136 0.864 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.218 0.782 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -14.288 -15.273 5.096 21.526 hybrid contribution 1.072 1.950 0.229 2.237 sum -13.216 -13.322 5.325 19.507 Atomic orbital electron populations 1.22054 0.92369 1.04982 1.02560 1.22587 0.97211 0.74432 1.07557 1.47851 1.29779 1.12825 1.17673 1.23907 0.98587 0.94387 1.00191 1.22000 1.02030 0.96333 0.96616 1.20500 0.86580 0.94503 0.97898 1.63550 1.07811 1.51297 1.02214 1.22553 0.97928 0.94861 0.91115 1.23070 0.97469 0.95725 1.01141 1.19803 0.84774 0.86453 0.89580 1.86124 1.49959 1.46657 1.56654 1.21864 1.33604 1.06956 0.97156 0.92202 1.25747 0.95816 1.00841 0.94974 1.69856 1.40249 1.39537 1.05641 0.85457 0.78031 0.79063 0.78725 1.19123 1.20533 1.20714 1.22865 0.92669 0.94792 0.95523 1.74996 1.10084 1.17446 1.14775 1.78119 1.22111 0.93400 1.16229 0.87040 0.92385 0.92977 0.87482 0.83918 0.75232 0.94171 0.86403 0.93734 0.93075 0.92975 0.93854 0.78153 0.92366 0.92382 0.90601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 10.04 71.98 0.72 -0.83 16 2 C 0.10 1.05 7.18 86.38 0.62 1.67 16 3 N -0.29 -6.31 3.44 -347.74 -1.20 -7.50 16 4 C -0.02 -0.41 11.50 83.49 0.96 0.55 16 5 C -0.03 -0.94 6.21 41.59 0.26 -0.68 16 6 C 0.13 4.25 5.11 85.56 0.44 4.69 16 7 N -0.52 -20.66 5.15 -890.09 -4.58 -25.24 16 8 C 0.06 2.79 6.39 86.65 0.55 3.34 16 9 C -0.13 -6.71 5.37 31.77 0.17 -6.54 16 10 C 0.23 11.96 0.87 -10.16 -0.01 11.95 16 11 O -0.59 -31.81 13.16 -148.98 -1.96 -33.77 16 12 C -0.56 -30.30 8.27 25.60 0.21 -30.09 16 13 H 0.06 3.19 7.79 -2.91 -0.02 3.16 16 14 C 0.03 1.43 5.29 84.65 0.45 1.88 16 15 N -0.91 -50.40 10.75 21.45 0.23 -50.17 16 16 Si 0.96 42.74 29.54 68.60 2.03 44.77 16 17 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 18 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 19 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 20 C 0.07 2.94 5.86 86.77 0.51 3.45 16 21 N -0.31 -11.04 11.83 -48.60 -0.57 -11.62 16 22 N -0.12 -3.74 12.91 37.02 0.48 -3.26 16 23 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 24 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.05 0.75 8.12 -2.39 -0.02 0.73 16 26 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.14 0.41 8.07 -2.39 -0.02 0.39 16 28 H 0.23 2.87 8.06 -2.91 -0.02 2.85 16 29 H 0.04 1.35 7.96 -2.39 -0.02 1.33 16 30 H 0.12 2.90 8.07 -2.38 -0.02 2.88 16 31 H 0.04 2.06 8.14 -2.38 -0.02 2.04 16 32 H 0.05 2.21 6.84 -2.39 -0.02 2.19 16 33 H 0.05 2.79 7.54 -2.39 -0.02 2.78 16 34 H 0.04 2.20 8.04 -2.39 -0.02 2.18 16 35 H 0.37 20.54 7.56 -74.06 -0.56 19.98 16 36 H 0.27 14.02 8.31 -92.71 -0.77 13.25 16 37 H 0.06 2.35 7.70 -2.39 -0.02 2.33 16 38 H 0.08 3.17 8.14 -2.39 -0.02 3.15 16 Total: -1.00 -70.01 314.93 -0.20 -70.21 By element: Atomic # 1 Polarization: 26.72 SS G_CDS: 0.50 Total: 27.21 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: 4.88 Total: -10.62 kcal Atomic # 7 Polarization: -92.15 SS G_CDS: -5.65 Total: -97.80 kcal Atomic # 8 Polarization: -31.81 SS G_CDS: -1.96 Total: -33.77 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -70.01 -0.20 -70.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119712708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.805 kcal (2) G-P(sol) polarization free energy of solvation -70.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds