Wall clock time and date at job start Mon Mar 30 2020 19:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47584 * 2 1 4 4 C 1.50697 * 109.47737 * 239.99724 * 2 1 3 5 5 O 1.21283 * 120.00521 * 239.72883 * 4 2 1 6 6 N 1.34784 * 119.99774 * 59.99989 * 4 2 1 7 7 C 1.46499 * 119.99893 * 179.72962 * 6 4 2 8 8 C 1.53003 * 109.46708 * 180.02562 * 7 6 4 9 9 H 1.08999 * 109.46677 * 294.99254 * 8 7 6 10 10 C 1.53001 * 109.47014 * 174.99880 * 8 7 6 11 11 N 1.46491 * 109.47746 * 54.99751 * 8 7 6 12 12 C 1.36933 * 120.00454 * 205.00333 * 11 8 7 13 13 H 1.07995 * 119.99809 * 359.97438 * 12 11 8 14 14 C 1.38811 * 120.00487 * 179.97438 * 12 11 8 15 15 N 1.31621 * 119.99700 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00344 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46960 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47267 * 120.00218 * 16 14 12 19 19 H 1.48507 * 109.47196 * 240.00326 * 16 14 12 20 20 N 1.46507 * 109.47031 * 119.99546 * 2 1 3 21 21 C 1.34953 * 126.03165 * 34.72250 * 20 2 1 22 22 C 1.35317 * 107.73917 * 179.83776 * 21 20 2 23 23 C 1.39869 * 107.92327 * 0.42111 * 22 21 20 24 24 N 1.30834 * 108.19929 * 359.73652 * 23 22 21 25 25 H 1.09006 * 109.46641 * 60.00174 * 1 2 3 26 26 H 1.08998 * 109.46893 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47310 * 300.00046 * 1 2 3 28 28 H 0.97005 * 119.99846 * 359.72750 * 6 4 2 29 29 H 1.08998 * 109.47134 * 299.99552 * 7 6 4 30 30 H 1.08994 * 109.47397 * 59.99843 * 7 6 4 31 31 H 1.09001 * 109.47112 * 59.99322 * 10 8 7 32 32 H 1.08995 * 109.47237 * 179.97438 * 10 8 7 33 33 H 1.08997 * 109.47076 * 300.00187 * 10 8 7 34 34 H 0.97006 * 119.99804 * 24.99370 * 11 8 7 35 35 H 0.97005 * 120.00067 * 180.02562 * 15 14 12 36 36 H 1.07999 * 126.12884 * 359.97438 * 21 20 2 37 37 H 1.08005 * 126.03778 * 180.16168 * 22 21 20 38 38 H 1.07995 * 125.89855 * 179.71843 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0325 -0.7104 -1.2304 5 8 2.7338 -1.6936 -1.1191 6 7 1.7069 -0.2500 -2.4546 7 6 2.2002 -0.9371 -3.6507 8 6 1.6897 -0.2162 -4.8999 9 1 0.6038 -0.2976 -4.9480 10 6 2.3047 -0.8572 -6.1457 11 7 2.0714 1.1967 -4.8388 12 6 1.3412 2.1334 -5.5204 13 1 0.4842 1.8304 -6.1035 14 6 1.7026 3.4724 -5.4621 15 7 2.7474 3.8416 -4.7519 16 14 0.7070 4.7500 -6.3925 17 1 -0.4083 4.0818 -7.1103 18 1 0.1561 5.7421 -5.4346 19 1 1.5820 5.4416 -7.3730 20 7 2.0183 -0.6906 1.1963 21 6 1.4372 -1.7526 1.7927 22 6 2.1965 -2.0927 2.8598 23 6 3.2733 -1.2023 2.9232 24 7 3.1675 -0.3615 1.9265 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.1459 0.5364 -2.5436 29 1 3.2902 -0.9323 -3.6488 30 1 1.8414 -1.9663 -3.6524 31 1 2.0207 -1.9086 -6.1912 32 1 1.9406 -0.3440 -7.0357 33 1 3.3906 -0.7760 -6.0976 34 1 2.8414 1.4689 -4.3153 35 1 2.9998 4.7774 -4.7108 36 1 0.5300 -2.2444 1.4739 37 1 2.0028 -2.9053 3.5444 38 1 4.0566 -1.2078 3.6666 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480429310.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:24:22 Heat of formation + Delta-G solvation = 53.336426 kcal Electronic energy + Delta-G solvation = -20144.423429 eV Core-core repulsion = 17024.210908 eV Total energy + Delta-G solvation = -3120.212520 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.148 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.23963 -39.41218 -36.43912 -34.58122 -33.61284 -31.90586 -30.05562 -29.51690 -28.74962 -26.22791 -24.51667 -23.66531 -21.34018 -20.98616 -20.28620 -19.59098 -17.77974 -17.21155 -16.96985 -15.64710 -15.39099 -14.96101 -14.50326 -14.34253 -13.89600 -13.62493 -13.55753 -13.20015 -12.83285 -12.63721 -12.52712 -12.25434 -12.16620 -12.06486 -11.66875 -11.43892 -10.94653 -10.82246 -10.61372 -10.41187 -10.07179 -9.93837 -9.79111 -9.29264 -9.06147 -8.77631 -8.51941 -7.11767 -5.88027 -3.19086 1.91595 2.39530 2.70065 2.93763 3.35034 3.41381 3.43826 3.45660 4.40210 4.48357 4.66245 4.83766 4.84630 4.99342 5.28359 5.37936 5.40610 5.42843 5.50259 5.57448 5.71271 5.84759 5.86049 6.00237 6.04396 6.11225 6.23551 6.48882 6.64980 6.68988 6.72721 6.94957 7.01152 7.59943 7.74259 7.78086 8.28910 8.36353 9.41109 9.95313 10.30865 11.33745 Molecular weight = 266.15amu Principal moments of inertia in cm(-1) A = 0.024359 B = 0.004392 C = 0.004021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.216317 B = 6374.162857 C = 6962.380787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.140 3.860 3 H 0.131 0.869 4 C 0.499 3.501 5 O -0.536 6.536 6 N -0.705 5.705 7 C 0.116 3.884 8 C 0.160 3.840 9 H 0.054 0.946 10 C -0.163 4.163 11 N -0.724 5.724 12 C -0.245 4.245 13 H 0.072 0.928 14 C -0.009 4.009 15 N -0.929 5.929 16 Si 0.906 3.094 17 H -0.280 1.280 18 H -0.291 1.291 19 H -0.291 1.291 20 N -0.349 5.349 21 C 0.067 3.933 22 C -0.279 4.279 23 C 0.042 3.958 24 N -0.289 5.289 25 H 0.093 0.907 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.411 0.589 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.039 0.961 32 H 0.059 0.941 33 H 0.049 0.951 34 H 0.385 0.615 35 H 0.256 0.744 36 H 0.168 0.832 37 H 0.145 0.855 38 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.851 -10.191 11.032 16.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.034 3.966 3 H 0.148 0.852 4 C 0.282 3.718 5 O -0.413 6.413 6 N -0.357 5.357 7 C -0.009 4.009 8 C 0.050 3.950 9 H 0.072 0.928 10 C -0.223 4.223 11 N -0.367 5.367 12 C -0.376 4.376 13 H 0.090 0.910 14 C -0.206 4.206 15 N -0.576 5.576 16 Si 0.737 3.263 17 H -0.206 1.206 18 H -0.218 1.218 19 H -0.219 1.219 20 N -0.131 5.131 21 C -0.079 4.079 22 C -0.309 4.309 23 C -0.144 4.144 24 N -0.109 5.109 25 H 0.112 0.888 26 H 0.089 0.911 27 H 0.097 0.903 28 H 0.248 0.752 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.058 0.942 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.219 0.781 35 H 0.066 0.934 36 H 0.185 0.815 37 H 0.163 0.837 38 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -5.003 -9.712 10.276 14.998 hybrid contribution -0.708 0.508 -0.144 0.883 sum -5.711 -9.204 10.132 14.832 Atomic orbital electron populations 1.22154 0.90599 1.04028 1.05004 1.21145 0.96104 0.98072 0.81277 0.85151 1.20584 0.81225 0.85100 0.84885 1.90728 1.37388 1.26516 1.86639 1.45921 1.52690 1.32396 1.04732 1.21732 0.99460 0.95494 0.84180 1.20507 0.97578 0.86028 0.90913 0.92788 1.22364 1.01197 0.98547 1.00243 1.42496 1.35115 0.99910 1.59186 1.19258 1.07856 0.87322 1.23181 0.91022 1.24753 0.98179 0.97198 1.00450 1.69676 1.27488 1.16186 1.44289 0.86149 0.79181 0.81830 0.79159 1.20552 1.21839 1.21856 1.48223 1.19300 1.24422 1.21186 1.22391 0.99790 0.90882 0.94828 1.21419 0.99417 1.06404 1.03633 1.23839 0.99194 0.94183 0.97230 1.77392 1.02124 1.24298 1.07097 0.88824 0.91083 0.90250 0.75161 0.91732 0.91719 0.94184 0.92240 0.93179 0.78069 0.93418 0.81451 0.83736 0.80201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.48 8.73 37.16 0.32 -1.16 16 2 C 0.14 1.87 3.73 -69.08 -0.26 1.61 16 3 H 0.13 1.74 8.14 -51.93 -0.42 1.31 16 4 C 0.50 8.10 7.22 -10.98 -0.08 8.02 16 5 O -0.54 -10.71 16.42 5.56 0.09 -10.62 16 6 N -0.70 -11.06 5.28 -60.30 -0.32 -11.38 16 7 C 0.12 1.91 5.23 -4.04 -0.02 1.89 16 8 C 0.16 2.87 3.05 -67.93 -0.21 2.67 16 9 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 10 C -0.16 -2.75 9.49 37.16 0.35 -2.39 16 11 N -0.72 -16.45 4.56 -53.43 -0.24 -16.69 16 12 C -0.25 -6.25 9.93 -15.06 -0.15 -6.40 16 13 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 14 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 15 N -0.93 -26.64 13.06 55.49 0.72 -25.91 16 16 Si 0.91 21.23 29.55 -169.99 -5.02 16.20 16 17 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 N -0.35 -5.12 3.02 -55.99 -0.17 -5.28 16 21 C 0.07 0.84 10.58 -17.22 -0.18 0.65 16 22 C -0.28 -3.31 10.80 -40.01 -0.43 -3.75 16 23 C 0.04 0.55 12.03 -17.37 -0.21 0.34 16 24 N -0.29 -4.68 12.57 30.62 0.39 -4.29 16 25 H 0.09 0.80 7.56 -51.93 -0.39 0.41 16 26 H 0.07 0.60 7.15 -51.93 -0.37 0.23 16 27 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.41 6.31 7.55 -40.82 -0.31 6.00 16 29 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.39 9.60 7.80 -40.82 -0.32 9.28 16 35 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 36 H 0.17 1.55 7.26 -52.49 -0.38 1.17 16 37 H 0.14 1.30 8.06 -52.48 -0.42 0.88 16 38 H 0.18 1.72 8.06 -52.49 -0.42 1.30 16 LS Contribution 326.73 15.07 4.92 4.92 Total: -1.00 -32.73 326.73 -6.13 -38.86 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: -5.54 Total: 13.05 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: -0.96 Total: 1.15 kcal Atomic # 7 Polarization: -63.94 SS G_CDS: 0.38 Total: -63.57 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.09 Total: -10.62 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.73 -6.13 -38.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480429310.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.198 kcal (2) G-P(sol) polarization free energy of solvation -32.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds