Wall clock time and date at job start Mon Mar 30 2020 19:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86807 * 119.99980 * 2 1 4 4 H 1.48493 * 109.46939 * 269.99836 * 3 2 1 5 5 H 1.48498 * 109.46734 * 29.99951 * 3 2 1 6 6 H 1.48501 * 109.46983 * 149.99397 * 3 2 1 7 7 C 1.38814 * 120.00239 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99971 * 0.02562 * 7 2 1 9 9 N 1.36934 * 120.00038 * 180.02562 * 7 2 1 10 10 C 1.46504 * 120.00108 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47138 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.47132 * 179.97438 * 11 10 9 13 13 C 1.34783 * 120.00160 * 179.97438 * 12 11 10 14 14 O 1.21278 * 119.99826 * 359.97438 * 13 12 11 15 15 C 1.50701 * 119.99955 * 179.72860 * 13 12 11 16 16 H 1.09001 * 115.54857 * 52.25555 * 15 13 12 17 17 C 1.52996 * 117.49939 * 197.96533 * 15 13 12 18 18 C 1.52999 * 117.49854 * 266.59030 * 15 13 12 19 19 H 1.08992 * 117.50277 * 145.02369 * 18 15 13 20 20 C 1.53009 * 117.49516 * 359.97438 * 18 15 13 21 21 C 1.54270 * 110.02593 * 183.26328 * 20 18 15 22 22 C 1.54898 * 104.19263 * 217.10652 * 21 20 18 23 23 C 1.54889 * 102.74809 * 37.94246 * 22 21 20 24 24 C 1.53869 * 110.03080 * 66.09787 * 20 18 15 25 25 H 0.96994 * 120.00257 * 359.97438 * 1 2 3 26 26 H 0.97001 * 120.00497 * 0.02562 * 9 7 2 27 27 H 1.08995 * 109.47223 * 59.99913 * 10 9 7 28 28 H 1.09002 * 109.46462 * 299.99907 * 10 9 7 29 29 H 1.09009 * 109.47257 * 59.99725 * 11 10 9 30 30 H 1.08997 * 109.47410 * 299.99851 * 11 10 9 31 31 H 0.96998 * 120.00396 * 0.02562 * 12 11 10 32 32 H 1.08993 * 117.50180 * 214.97826 * 17 15 13 33 33 H 1.09007 * 117.49468 * 359.97438 * 17 15 13 34 34 H 1.08996 * 110.02050 * 304.70545 * 20 18 15 35 35 H 1.08994 * 110.48746 * 335.77935 * 21 20 18 36 36 H 1.08998 * 110.48398 * 98.43342 * 21 20 18 37 37 H 1.09004 * 110.75516 * 279.63327 * 22 21 20 38 38 H 1.08999 * 110.75512 * 156.25711 * 22 21 20 39 39 H 1.08996 * 110.49102 * 203.38109 * 23 22 21 40 40 H 1.09001 * 110.48553 * 80.73538 * 23 22 21 41 41 H 1.08998 * 110.03267 * 238.56529 * 24 20 18 42 42 H 1.08997 * 110.03592 * 359.97438 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4402 0.7002 7 6 2.0103 -1.2021 0.0005 8 1 1.4704 -2.1374 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1122 -2.4708 0.0011 11 6 5.6164 -2.1912 0.0011 12 7 6.3490 -3.4598 0.0017 13 6 7.6968 -3.4598 0.0013 14 8 8.3031 -2.4095 -0.0001 15 6 8.4503 -4.7649 0.0081 16 1 8.1638 -5.4772 -0.7656 17 6 9.9217 -4.7289 0.4260 18 6 8.8739 -5.3290 1.3658 19 1 8.8665 -6.4123 1.4851 20 6 8.5004 -4.5245 2.6126 21 6 9.0783 -5.2031 3.8718 22 6 7.9865 -4.9943 4.9506 23 6 6.6740 -5.1683 4.1467 24 6 6.9719 -4.5025 2.7873 25 1 -0.4850 0.8400 0.0004 26 1 3.8647 -0.3621 0.0014 27 1 3.8493 -3.0422 -0.8891 28 1 3.8485 -3.0425 0.8909 29 1 5.8797 -1.6195 0.8911 30 1 5.8797 -1.6196 -0.8889 31 1 5.8641 -4.2999 0.0016 32 1 10.6035 -5.4176 -0.0728 33 1 10.3447 -3.7612 0.6957 34 1 8.8813 -3.5068 2.5279 35 1 9.2390 -6.2661 3.6925 36 1 10.0084 -4.7208 4.1722 37 1 8.0495 -3.9923 5.3751 38 1 8.0647 -5.7513 5.7309 39 1 5.8497 -4.6607 4.6475 40 1 6.4466 -6.2257 4.0118 41 1 6.6110 -3.4740 2.7883 42 1 6.4960 -5.0644 1.9837 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001136044708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:25:32 Heat of formation + Delta-G solvation = -18.493478 kcal Electronic energy + Delta-G solvation = -20435.057391 eV Core-core repulsion = 17415.270436 eV Total energy + Delta-G solvation = -3019.786955 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.38586 -38.29477 -36.24024 -35.49877 -33.90681 -31.43354 -29.02904 -28.77412 -28.32373 -24.69812 -22.71895 -22.20965 -21.47752 -20.81752 -20.45066 -19.26399 -17.76476 -17.03597 -16.25312 -15.82402 -15.42788 -14.98749 -14.77300 -14.38881 -13.90432 -13.72238 -13.55188 -13.47340 -12.84232 -12.63596 -12.21107 -11.99704 -11.57116 -11.52056 -11.45562 -11.22639 -11.17186 -10.96137 -10.86225 -10.85550 -10.56553 -10.35310 -10.19506 -10.16897 -9.74210 -9.62462 -9.01512 -8.86515 -7.31164 -5.80946 -3.18251 2.58222 3.15043 3.37634 3.41376 3.45284 3.57785 4.27908 4.40897 4.47417 4.56755 4.65875 4.76159 4.82756 5.04956 5.19443 5.30422 5.34929 5.36341 5.44055 5.45094 5.52780 5.54876 5.58816 5.62087 5.65228 5.68500 5.77791 5.83982 5.94864 5.96495 6.03682 6.11036 6.22840 6.27915 6.41137 6.58603 6.64139 7.58767 7.92629 8.30400 8.37252 9.14956 9.87324 10.05726 11.36974 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.022637 B = 0.004172 C = 0.003816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.627008 B = 6710.525031 C = 7335.695462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.008 3.992 3 Si 0.884 3.116 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.249 4.249 8 H 0.091 0.909 9 N -0.752 5.752 10 C 0.149 3.851 11 C 0.108 3.892 12 N -0.718 5.718 13 C 0.545 3.455 14 O -0.543 6.543 15 C -0.190 4.190 16 H 0.125 0.875 17 C -0.146 4.146 18 C -0.117 4.117 19 H 0.112 0.888 20 C -0.070 4.070 21 C -0.114 4.114 22 C -0.127 4.127 23 C -0.125 4.125 24 C -0.118 4.118 25 H 0.261 0.739 26 H 0.363 0.637 27 H 0.032 0.968 28 H 0.033 0.967 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.401 0.599 32 H 0.100 0.900 33 H 0.105 0.895 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.867 -14.549 5.559 25.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.188 4.188 3 Si 0.714 3.286 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.378 4.378 8 H 0.109 0.891 9 N -0.399 5.399 10 C 0.021 3.979 11 C -0.016 4.016 12 N -0.369 5.369 13 C 0.331 3.669 14 O -0.420 6.420 15 C -0.211 4.211 16 H 0.143 0.857 17 C -0.183 4.183 18 C -0.135 4.135 19 H 0.130 0.870 20 C -0.088 4.088 21 C -0.151 4.151 22 C -0.164 4.164 23 C -0.162 4.162 24 C -0.156 4.156 25 H 0.071 0.929 26 H 0.196 0.804 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.235 0.765 32 H 0.119 0.881 33 H 0.124 0.876 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 20.032 -13.844 5.550 24.974 hybrid contribution 0.171 0.804 -0.192 0.844 sum 20.203 -13.040 5.358 24.636 Atomic orbital electron populations 1.69695 1.05115 1.25990 1.57137 1.24662 0.95241 0.97277 1.01656 0.86555 0.79287 0.84826 0.77946 1.20907 1.21572 1.20203 1.19006 0.80236 0.94860 1.43717 0.89105 1.42535 1.04143 1.01863 1.91344 1.20724 0.87690 0.90206 0.99250 1.21579 0.92443 0.85246 1.02294 1.45873 1.06028 1.10009 1.74976 1.19524 0.82100 0.89705 0.75565 1.90693 1.68325 1.33205 1.49822 1.22309 0.99403 0.98186 1.01232 0.85681 1.23066 0.90160 1.03289 1.01817 1.22546 1.02398 0.99413 0.89184 0.86956 1.21468 0.95947 0.98807 0.92593 1.22379 0.98095 1.00434 0.94238 1.22512 0.94943 1.01539 0.97417 1.22360 0.97528 1.00583 0.95739 1.22240 0.94604 1.01389 0.97359 0.92934 0.80412 0.94969 0.94934 0.91495 0.91476 0.76488 0.88120 0.87636 0.90609 0.91464 0.91810 0.91575 0.91738 0.91586 0.91749 0.91516 0.91536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.22 13.97 55.49 0.78 -28.44 16 2 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 3 Si 0.88 22.26 27.74 -169.99 -4.71 17.54 16 4 H -0.28 -7.07 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 6 H -0.28 -6.59 6.52 56.52 0.37 -6.22 16 7 C -0.25 -7.03 10.47 -15.06 -0.16 -7.19 16 8 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 9 N -0.75 -17.90 5.41 -59.91 -0.32 -18.23 16 10 C 0.15 2.77 6.37 -4.04 -0.03 2.74 16 11 C 0.11 1.74 5.79 -4.04 -0.02 1.72 16 12 N -0.72 -9.22 4.54 -60.29 -0.27 -9.50 16 13 C 0.55 7.42 5.70 -10.98 -0.06 7.35 16 14 O -0.54 -9.63 16.41 5.56 0.09 -9.54 16 15 C -0.19 -1.87 5.99 -91.77 -0.55 -2.42 16 16 H 0.13 0.97 8.14 -51.93 -0.42 0.55 16 17 C -0.15 -1.33 9.69 -26.73 -0.26 -1.58 16 18 C -0.12 -0.99 4.84 -90.61 -0.44 -1.43 16 19 H 0.11 0.76 7.91 -51.93 -0.41 0.35 16 20 C -0.07 -0.68 2.43 -89.50 -0.22 -0.90 16 21 C -0.11 -0.93 6.36 -25.07 -0.16 -1.09 16 22 C -0.13 -1.07 6.91 -24.73 -0.17 -1.24 16 23 C -0.12 -1.15 6.83 -25.07 -0.17 -1.32 16 24 C -0.12 -1.23 4.87 -25.61 -0.12 -1.35 16 25 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 26 H 0.36 8.53 5.53 -40.82 -0.23 8.30 16 27 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.07 1.15 8.14 -51.92 -0.42 0.72 16 30 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.40 4.14 7.97 -40.82 -0.33 3.82 16 32 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.11 1.15 7.73 -51.92 -0.40 0.75 16 34 H 0.08 0.91 7.87 -51.93 -0.41 0.51 16 35 H 0.07 0.48 7.70 -51.93 -0.40 0.08 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.07 0.65 6.48 -51.93 -0.34 0.31 16 LS Contribution 335.83 15.07 5.06 5.06 Total: -1.00 -32.97 335.83 -9.02 -41.98 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -7.17 Total: 7.68 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: -2.46 Total: -6.56 kcal Atomic # 7 Polarization: -56.35 SS G_CDS: 0.18 Total: -56.17 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.09 Total: -9.54 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.71 Total: 17.54 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.97 -9.02 -41.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136044708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.489 kcal (2) G-P(sol) polarization free energy of solvation -32.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds