Wall clock time and date at job start Mon Mar 30 2020 19:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99857 * 2 1 4 4 H 1.48497 * 109.47273 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46735 * 300.00101 * 3 2 1 6 6 H 1.48500 * 109.47272 * 59.99492 * 3 2 1 7 7 C 1.37876 * 120.00420 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99986 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99656 * 0.02562 * 7 2 1 10 10 N 1.46507 * 109.46959 * 180.02562 * 9 7 2 11 11 C 1.34775 * 119.99876 * 180.02562 * 10 9 7 12 12 O 1.21583 * 120.00144 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99585 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99665 * 179.72218 * 13 11 10 15 15 H 1.08999 * 109.47480 * 35.27807 * 14 13 11 16 16 C 1.53008 * 109.47014 * 275.27733 * 14 13 11 17 17 C 1.53005 * 109.46808 * 179.97438 * 16 14 13 18 18 C 1.53002 * 109.46995 * 60.00163 * 17 16 14 19 19 C 1.52999 * 109.47179 * 299.99723 * 18 17 16 20 20 H 1.08999 * 109.46965 * 299.99858 * 19 18 17 21 21 C 1.53002 * 109.47179 * 179.97438 * 19 18 17 22 22 C 1.53002 * 117.49682 * 128.62042 * 21 19 18 23 23 C 1.53002 * 60.00310 * 252.51283 * 22 21 19 24 24 C 1.52992 * 109.46921 * 60.00100 * 19 18 17 25 25 H 0.96999 * 120.00495 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.46948 * 60.00523 * 9 7 2 27 27 H 1.08994 * 109.47551 * 299.99811 * 9 7 2 28 28 H 0.97000 * 119.99601 * 359.97438 * 10 9 7 29 29 H 0.97001 * 120.00485 * 0.02562 * 13 11 10 30 30 H 1.09000 * 109.47169 * 299.99790 * 16 14 13 31 31 H 1.08995 * 109.47066 * 60.00517 * 16 14 13 32 32 H 1.08999 * 109.47607 * 300.00026 * 17 16 14 33 33 H 1.09000 * 109.47284 * 180.02562 * 17 16 14 34 34 H 1.09005 * 109.46967 * 179.97438 * 18 17 16 35 35 H 1.09000 * 109.47442 * 59.99899 * 18 17 16 36 36 H 1.09001 * 115.54914 * 274.33253 * 21 19 18 37 37 H 1.08995 * 117.49977 * 0.02562 * 22 21 19 38 38 H 1.09000 * 117.49684 * 145.02432 * 22 21 19 39 39 H 1.08994 * 117.49825 * 252.51563 * 23 22 21 40 40 H 1.08994 * 117.49721 * 107.48545 * 23 22 21 41 41 H 1.09009 * 109.47102 * 180.02562 * 24 19 18 42 42 H 1.08999 * 109.47499 * 60.00085 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0018 11 6 1.7540 -4.8833 0.0015 12 8 0.5587 -5.1055 0.0006 13 7 2.6299 -5.9076 0.0021 14 6 2.1417 -7.2889 0.0079 15 1 1.2278 -7.3537 -0.5827 16 6 1.8509 -7.7209 1.4466 17 6 1.3403 -9.1633 1.4526 18 6 2.4035 -10.0831 0.8488 19 6 2.6943 -9.6510 -0.5898 20 1 1.7803 -9.7155 -1.1803 21 6 3.7579 -10.5705 -1.1934 22 6 3.4507 -11.2121 -2.5480 23 6 3.4356 -12.0639 -1.2771 24 6 3.2047 -8.2088 -0.5958 25 1 -0.4851 0.8400 -0.0004 26 1 0.6249 -2.5571 -0.8897 27 1 0.6242 -2.5567 0.8902 28 1 3.1569 -3.4353 0.0021 29 1 3.5836 -5.7304 0.0031 30 1 2.7647 -7.6562 2.0372 31 1 1.0931 -7.0660 1.8766 32 1 0.4264 -9.2277 0.8621 33 1 1.1327 -9.4710 2.4774 34 1 2.0399 -11.1107 0.8535 35 1 3.3174 -10.0188 1.4393 36 1 4.7916 -10.2891 -0.9921 37 1 2.4912 -10.9789 -3.0093 38 1 4.2824 -11.3529 -3.2383 39 1 4.2574 -12.7649 -1.1313 40 1 2.4660 -12.3912 -0.9021 41 1 3.4115 -7.9008 -1.6208 42 1 4.1187 -8.1444 -0.0053 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425740887.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:27:12 Heat of formation + Delta-G solvation = -38.681536 kcal Electronic energy + Delta-G solvation = -20082.935533 eV Core-core repulsion = 17062.273158 eV Total energy + Delta-G solvation = -3020.662375 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.87365 -38.65930 -36.55172 -34.11333 -33.51744 -32.21577 -30.71827 -29.19743 -26.80537 -23.72754 -23.08479 -22.54898 -21.86575 -20.50890 -20.07483 -19.71607 -17.96048 -16.39975 -16.01018 -15.48624 -14.91269 -14.76130 -14.58676 -14.51928 -14.08375 -13.59225 -13.48476 -13.08407 -12.68433 -12.56631 -11.94915 -11.91914 -11.80438 -11.78815 -11.23785 -11.20752 -10.91757 -10.90181 -10.75232 -10.70942 -10.55038 -10.27480 -10.21173 -9.95053 -9.32277 -9.29830 -8.71426 -8.60306 -7.70277 -6.12603 -4.18840 3.25765 3.31532 3.34821 3.41844 3.57496 4.01891 4.31750 4.36174 4.61502 4.64795 4.77491 4.85052 4.94414 5.09725 5.20929 5.23479 5.28993 5.37928 5.40568 5.43164 5.47690 5.53637 5.59539 5.66120 5.81898 5.86799 5.94395 6.01909 6.07794 6.16396 6.21835 6.37266 6.44570 7.01059 7.19490 7.57339 7.60879 7.61651 7.96295 8.09679 8.81063 9.01350 9.39218 9.53701 10.97749 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.041665 B = 0.003128 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.860259 B = 8949.359728 C = 9257.944646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.062 3.938 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.540 4.540 8 H 0.063 0.937 9 C 0.267 3.733 10 N -0.731 5.731 11 C 0.693 3.307 12 O -0.601 6.601 13 N -0.754 5.754 14 C 0.167 3.833 15 H 0.084 0.916 16 C -0.131 4.131 17 C -0.117 4.117 18 C -0.111 4.111 19 C -0.052 4.052 20 H 0.073 0.927 21 C -0.145 4.145 22 C -0.182 4.182 23 C -0.181 4.181 24 C -0.117 4.117 25 H 0.265 0.735 26 H 0.024 0.976 27 H 0.024 0.976 28 H 0.386 0.614 29 H 0.389 0.611 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.103 0.897 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.069 0.931 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.263 -22.003 -0.567 23.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.579 4.579 8 H 0.081 0.919 9 C 0.146 3.854 10 N -0.383 5.383 11 C 0.392 3.608 12 O -0.481 6.481 13 N -0.410 5.410 14 C 0.061 3.939 15 H 0.102 0.898 16 C -0.170 4.170 17 C -0.155 4.155 18 C -0.148 4.148 19 C -0.071 4.071 20 H 0.091 0.909 21 C -0.163 4.163 22 C -0.219 4.219 23 C -0.218 4.218 24 C -0.155 4.155 25 H 0.075 0.925 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.218 0.782 29 H 0.222 0.778 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.121 0.879 37 H 0.112 0.888 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.112 0.888 41 H 0.087 0.913 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.948 -22.014 -0.576 23.412 hybrid contribution 1.352 1.125 0.002 1.759 sum 9.300 -20.889 -0.575 22.873 Atomic orbital electron populations 1.69991 1.06080 1.27106 1.49158 1.24951 0.94910 0.99399 0.94836 0.86365 0.79804 0.83029 0.77711 1.19680 1.20827 1.20834 1.21274 0.93286 0.90475 1.52820 0.91936 1.18962 0.87805 0.81128 0.97536 1.45721 1.10699 1.04508 1.77378 1.16174 0.85286 0.81063 0.78230 1.90859 1.14264 1.84224 1.58705 1.45245 1.08635 1.05035 1.82075 1.20641 0.97502 0.79668 0.96057 0.89791 1.21970 1.01575 0.96153 0.97286 1.21504 0.98516 0.94664 1.00841 1.21581 0.99186 0.98858 0.95216 1.20684 0.97054 0.93055 0.96347 0.90858 1.22340 0.99931 0.93991 1.00036 1.23021 1.03153 1.04735 0.90958 1.22927 1.03022 0.93624 1.02226 1.21808 0.98373 0.93874 1.01414 0.92549 0.95812 0.95813 0.78249 0.77783 0.92167 0.91149 0.91801 0.91906 0.92022 0.91908 0.87912 0.88755 0.89057 0.89085 0.88789 0.91258 0.91540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.49 13.29 55.43 0.74 -25.75 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.54 -14.92 9.28 -34.44 -0.32 -15.24 16 8 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 9 C 0.27 7.29 5.43 -5.19 -0.03 7.26 16 10 N -0.73 -16.02 5.55 -66.41 -0.37 -16.39 16 11 C 0.69 14.62 8.53 -86.92 -0.74 13.88 16 12 O -0.60 -15.30 16.01 5.29 0.08 -15.21 16 13 N -0.75 -11.53 5.08 -58.67 -0.30 -11.82 16 14 C 0.17 2.23 2.45 -67.93 -0.17 2.07 16 15 H 0.08 1.34 7.58 -51.93 -0.39 0.94 16 16 C -0.13 -1.66 5.49 -26.72 -0.15 -1.81 16 17 C -0.12 -1.20 5.92 -26.73 -0.16 -1.36 16 18 C -0.11 -0.95 5.04 -26.73 -0.13 -1.08 16 19 C -0.05 -0.46 2.34 -90.62 -0.21 -0.67 16 20 H 0.07 0.70 7.90 -51.93 -0.41 0.29 16 21 C -0.14 -1.13 5.15 -90.61 -0.47 -1.60 16 22 C -0.18 -1.37 10.18 -26.73 -0.27 -1.64 16 23 C -0.18 -1.28 9.74 -26.72 -0.26 -1.54 16 24 C -0.12 -1.16 4.65 -26.74 -0.12 -1.28 16 25 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 26 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.39 7.23 8.34 -40.82 -0.34 6.89 16 29 H 0.39 4.79 8.62 -40.82 -0.35 4.44 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.48 7.29 -51.93 -0.38 0.10 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.10 0.77 8.11 -51.93 -0.42 0.35 16 37 H 0.09 0.73 8.05 -51.93 -0.42 0.31 16 38 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.09 0.65 7.61 -51.93 -0.40 0.26 16 41 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 339.40 15.07 5.11 5.11 Total: -1.00 -32.45 339.40 -10.17 -42.62 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -7.29 Total: 6.73 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: -3.13 Total: -1.35 kcal Atomic # 7 Polarization: -54.03 SS G_CDS: 0.07 Total: -53.96 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: 0.08 Total: -15.21 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.45 -10.17 -42.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425740887.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.936 kcal (2) G-P(sol) polarization free energy of solvation -32.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds