Wall clock time and date at job start Mon Mar 30 2020 19:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99857 * 2 1 4 4 H 1.48497 * 109.47273 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46735 * 300.00101 * 3 2 1 6 6 H 1.48500 * 109.47272 * 59.99492 * 3 2 1 7 7 C 1.37876 * 120.00420 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99986 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99656 * 0.02562 * 7 2 1 10 10 N 1.46507 * 109.46959 * 180.02562 * 9 7 2 11 11 C 1.34775 * 119.99876 * 180.02562 * 10 9 7 12 12 O 1.21583 * 120.00144 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99585 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99665 * 179.72218 * 13 11 10 15 15 H 1.08999 * 109.47480 * 35.27807 * 14 13 11 16 16 C 1.53008 * 109.47014 * 275.27733 * 14 13 11 17 17 C 1.53005 * 109.46808 * 179.97438 * 16 14 13 18 18 C 1.53002 * 109.46995 * 60.00163 * 17 16 14 19 19 C 1.52999 * 109.47179 * 299.99723 * 18 17 16 20 20 H 1.08999 * 109.46965 * 299.99858 * 19 18 17 21 21 C 1.53002 * 109.47179 * 179.97438 * 19 18 17 22 22 C 1.53002 * 117.49682 * 128.62042 * 21 19 18 23 23 C 1.53002 * 60.00310 * 252.51283 * 22 21 19 24 24 C 1.52992 * 109.46921 * 60.00100 * 19 18 17 25 25 H 0.96999 * 120.00495 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.46948 * 60.00523 * 9 7 2 27 27 H 1.08994 * 109.47551 * 299.99811 * 9 7 2 28 28 H 0.97000 * 119.99601 * 359.97438 * 10 9 7 29 29 H 0.97001 * 120.00485 * 0.02562 * 13 11 10 30 30 H 1.09000 * 109.47169 * 299.99790 * 16 14 13 31 31 H 1.08995 * 109.47066 * 60.00517 * 16 14 13 32 32 H 1.08999 * 109.47607 * 300.00026 * 17 16 14 33 33 H 1.09000 * 109.47284 * 180.02562 * 17 16 14 34 34 H 1.09005 * 109.46967 * 179.97438 * 18 17 16 35 35 H 1.09000 * 109.47442 * 59.99899 * 18 17 16 36 36 H 1.09001 * 115.54914 * 274.33253 * 21 19 18 37 37 H 1.08995 * 117.49977 * 0.02562 * 22 21 19 38 38 H 1.09000 * 117.49684 * 145.02432 * 22 21 19 39 39 H 1.08994 * 117.49825 * 252.51563 * 23 22 21 40 40 H 1.08994 * 117.49721 * 107.48545 * 23 22 21 41 41 H 1.09009 * 109.47102 * 180.02562 * 24 19 18 42 42 H 1.08999 * 109.47499 * 60.00085 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0018 11 6 1.7540 -4.8833 0.0015 12 8 0.5587 -5.1055 0.0006 13 7 2.6299 -5.9076 0.0021 14 6 2.1417 -7.2889 0.0079 15 1 1.2278 -7.3537 -0.5827 16 6 1.8509 -7.7209 1.4466 17 6 1.3403 -9.1633 1.4526 18 6 2.4035 -10.0831 0.8488 19 6 2.6943 -9.6510 -0.5898 20 1 1.7803 -9.7155 -1.1803 21 6 3.7579 -10.5705 -1.1934 22 6 3.4507 -11.2121 -2.5480 23 6 3.4356 -12.0639 -1.2771 24 6 3.2047 -8.2088 -0.5958 25 1 -0.4851 0.8400 -0.0004 26 1 0.6249 -2.5571 -0.8897 27 1 0.6242 -2.5567 0.8902 28 1 3.1569 -3.4353 0.0021 29 1 3.5836 -5.7304 0.0031 30 1 2.7647 -7.6562 2.0372 31 1 1.0931 -7.0660 1.8766 32 1 0.4264 -9.2277 0.8621 33 1 1.1327 -9.4710 2.4774 34 1 2.0399 -11.1107 0.8535 35 1 3.3174 -10.0188 1.4393 36 1 4.7916 -10.2891 -0.9921 37 1 2.4912 -10.9789 -3.0093 38 1 4.2824 -11.3529 -3.2383 39 1 4.2574 -12.7649 -1.1313 40 1 2.4660 -12.3912 -0.9021 41 1 3.4115 -7.9008 -1.6208 42 1 4.1187 -8.1444 -0.0053 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000425740887.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:27:11 Heat of formation + Delta-G solvation = -60.026097 kcal Electronic energy + Delta-G solvation = -20083.861103 eV Core-core repulsion = 17062.273158 eV Total energy + Delta-G solvation = -3021.587944 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.19086 -39.84564 -37.46939 -36.07910 -34.92110 -34.20408 -31.56432 -30.48735 -28.72497 -24.97746 -24.33508 -23.58436 -22.74302 -21.93984 -21.12719 -20.71304 -19.67203 -18.03392 -17.51804 -16.77071 -16.42757 -16.20705 -15.86427 -15.36174 -15.16082 -15.05601 -14.89459 -14.27399 -14.07637 -14.00842 -13.55387 -13.41636 -12.85981 -12.75248 -12.69373 -12.35697 -12.22381 -12.17233 -12.02547 -11.62767 -11.57299 -11.44270 -11.30919 -11.21388 -10.89927 -10.81141 -10.62818 -10.17838 -9.56238 -8.28285 -6.44804 1.43499 1.45279 1.58543 1.91010 2.27305 2.39888 2.97288 3.06667 3.51126 3.59933 3.85036 3.97034 4.06777 4.12551 4.15285 4.34263 4.41804 4.52471 4.59396 4.62085 4.71859 4.75906 4.87286 5.00302 5.03293 5.13092 5.16473 5.17410 5.21881 5.27163 5.32957 5.34620 5.38777 5.43551 5.50035 5.59828 5.65926 5.72585 5.85913 6.30831 6.67579 7.24883 7.35381 7.76142 8.84465 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.041665 B = 0.003128 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.860259 B = 8949.359728 C = 9257.944646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.987 3.013 4 H -0.253 1.253 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.553 4.553 8 H 0.084 0.916 9 C 0.286 3.714 10 N -0.724 5.724 11 C 0.690 3.310 12 O -0.650 6.650 13 N -0.729 5.729 14 C 0.163 3.837 15 H 0.052 0.948 16 C -0.127 4.127 17 C -0.114 4.114 18 C -0.104 4.104 19 C -0.050 4.050 20 H 0.061 0.939 21 C -0.146 4.146 22 C -0.190 4.190 23 C -0.175 4.175 24 C -0.105 4.105 25 H 0.269 0.731 26 H -0.016 1.016 27 H -0.016 1.016 28 H 0.404 0.596 29 H 0.410 0.590 30 H 0.077 0.923 31 H 0.030 0.970 32 H 0.051 0.949 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.112 0.888 37 H 0.087 0.913 38 H 0.098 0.902 39 H 0.102 0.898 40 H 0.094 0.906 41 H 0.069 0.931 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.465 -22.831 -0.404 26.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.810 3.190 4 H -0.176 1.176 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.591 4.591 8 H 0.102 0.898 9 C 0.162 3.838 10 N -0.378 5.378 11 C 0.390 3.610 12 O -0.533 6.533 13 N -0.385 5.385 14 C 0.058 3.942 15 H 0.071 0.929 16 C -0.166 4.166 17 C -0.152 4.152 18 C -0.141 4.141 19 C -0.069 4.069 20 H 0.079 0.921 21 C -0.164 4.164 22 C -0.226 4.226 23 C -0.212 4.212 24 C -0.143 4.143 25 H 0.078 0.922 26 H 0.002 0.998 27 H 0.002 0.998 28 H 0.240 0.760 29 H 0.246 0.754 30 H 0.095 0.905 31 H 0.049 0.951 32 H 0.070 0.930 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.130 0.870 37 H 0.105 0.895 38 H 0.117 0.883 39 H 0.121 0.879 40 H 0.113 0.887 41 H 0.088 0.912 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 11.232 -22.901 -0.415 25.511 hybrid contribution 0.298 1.292 -0.053 1.327 sum 11.531 -21.609 -0.468 24.497 Atomic orbital electron populations 1.70155 1.08318 1.28512 1.50070 1.26094 0.95800 1.03954 0.93885 0.85074 0.79051 0.77155 0.77678 1.17588 1.20422 1.20437 1.21632 0.94311 0.90435 1.52728 0.89797 1.18390 0.88126 0.83457 0.93790 1.45307 1.10836 1.03864 1.77804 1.16365 0.85224 0.81643 0.77788 1.90828 1.16839 1.84939 1.60650 1.45045 1.08905 1.04521 1.80038 1.20841 0.97756 0.78994 0.96572 0.92949 1.21910 1.01138 0.97035 0.96468 1.21487 0.98717 0.93378 1.01613 1.21538 0.98901 0.98877 0.94771 1.20637 0.97058 0.92538 0.96654 0.92084 1.22279 0.99790 0.94226 1.00121 1.23078 1.03168 1.05145 0.91256 1.22995 1.03492 0.93267 1.01403 1.21738 0.97662 0.93494 1.01381 0.92241 0.99834 0.99845 0.76038 0.75420 0.90470 0.95147 0.93001 0.90796 0.90699 0.90682 0.86965 0.89453 0.88317 0.87929 0.88723 0.91214 0.89361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.20 13.29 21.45 0.28 -56.92 16 2 C 0.00 0.12 5.46 84.65 0.46 0.58 16 3 Si 0.99 42.82 29.54 68.60 2.03 44.84 16 4 H -0.25 -10.07 7.11 99.48 0.71 -9.36 16 5 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 6 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 7 C -0.55 -30.72 9.28 25.60 0.24 -30.49 16 8 H 0.08 4.20 7.60 -2.91 -0.02 4.18 16 9 C 0.29 16.31 5.43 85.63 0.46 16.77 16 10 N -0.72 -32.32 5.55 -482.30 -2.68 -35.00 16 11 C 0.69 29.99 8.53 179.05 1.53 31.51 16 12 O -0.65 -34.99 16.01 -3.98 -0.06 -35.05 16 13 N -0.73 -21.98 5.08 -457.81 -2.33 -24.31 16 14 C 0.16 4.34 2.45 44.99 0.11 4.45 16 15 H 0.05 1.75 7.58 -2.39 -0.02 1.73 16 16 C -0.13 -3.19 5.49 30.60 0.17 -3.03 16 17 C -0.11 -2.24 5.92 30.60 0.18 -2.05 16 18 C -0.10 -1.52 5.04 30.59 0.15 -1.36 16 19 C -0.05 -0.78 2.34 -10.80 -0.03 -0.81 16 20 H 0.06 1.12 7.90 -2.39 -0.02 1.10 16 21 C -0.15 -1.88 5.15 -10.79 -0.06 -1.94 16 22 C -0.19 -2.49 10.18 30.60 0.31 -2.17 16 23 C -0.17 -2.01 9.74 30.60 0.30 -1.72 16 24 C -0.10 -1.87 4.65 30.59 0.14 -1.72 16 25 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 26 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 27 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 28 H 0.40 14.79 8.34 -92.71 -0.77 14.02 16 29 H 0.41 9.23 8.62 -92.71 -0.80 8.43 16 30 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.05 1.13 8.14 -2.39 -0.02 1.12 16 33 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.07 0.95 7.29 -2.38 -0.02 0.93 16 35 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.11 1.28 8.11 -2.39 -0.02 1.26 16 37 H 0.09 1.26 8.05 -2.39 -0.02 1.24 16 38 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.09 1.08 7.61 -2.39 -0.02 1.07 16 41 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 42 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -73.82 339.40 0.65 -73.17 By element: Atomic # 1 Polarization: 25.80 SS G_CDS: -0.57 Total: 25.23 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: 3.98 Total: 8.03 kcal Atomic # 7 Polarization: -111.50 SS G_CDS: -4.72 Total: -116.22 kcal Atomic # 8 Polarization: -34.99 SS G_CDS: -0.06 Total: -35.05 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.84 kcal Total: -73.82 0.65 -73.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425740887.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.144 kcal (2) G-P(sol) polarization free energy of solvation -73.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds