Wall clock time and date at job start Mon Mar 30 2020 19:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 115.55038 * 2 1 4 4 C 1.50703 * 109.47422 * 279.12277 * 3 2 1 5 5 O 1.21280 * 119.99886 * 5.54372 * 4 3 2 6 6 N 1.34774 * 120.00033 * 185.54266 * 4 3 2 7 7 C 1.46931 * 120.63011 * 359.71761 * 6 4 3 8 8 C 1.52761 * 109.00794 * 233.58416 * 7 6 4 9 9 C 1.53042 * 109.38588 * 305.59228 * 8 7 6 10 10 N 1.46499 * 109.44873 * 181.25802 * 9 8 7 11 11 C 1.36937 * 120.00317 * 84.93383 * 10 9 8 12 12 H 1.07991 * 119.99975 * 359.97438 * 11 10 9 13 13 C 1.38816 * 119.99439 * 179.97438 * 11 10 9 14 14 N 1.31616 * 120.00624 * 0.02562 * 13 11 10 15 15 Si 1.86808 * 119.99587 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.46969 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.47042 * 119.99748 * 15 13 11 18 18 H 1.48501 * 109.46803 * 240.00194 * 15 13 11 19 19 C 1.53032 * 109.54000 * 61.24012 * 9 8 7 20 20 C 1.46929 * 120.63404 * 180.02562 * 6 4 3 21 21 C 1.52994 * 117.51759 * 145.70907 * 2 1 3 22 22 C 1.52991 * 60.00357 * 107.47993 * 21 2 1 23 23 H 1.08998 * 109.47244 * 60.52181 * 1 2 3 24 24 H 1.08998 * 109.47122 * 180.51714 * 1 2 3 25 25 H 1.08999 * 109.47341 * 300.51981 * 1 2 3 26 26 H 1.09006 * 109.47017 * 39.12468 * 3 2 1 27 27 H 1.08999 * 109.47509 * 159.12145 * 3 2 1 28 28 H 1.08995 * 109.58444 * 353.41910 * 7 6 4 29 29 H 1.08999 * 109.58507 * 113.84986 * 7 6 4 30 30 H 1.08997 * 109.56571 * 185.55130 * 8 7 6 31 31 H 1.09001 * 109.35946 * 65.50164 * 8 7 6 32 32 H 1.09007 * 109.45564 * 301.21520 * 9 8 7 33 33 H 0.97005 * 119.99632 * 264.93715 * 10 9 8 34 34 H 0.96999 * 120.00052 * 180.02562 * 14 13 11 35 35 H 1.08998 * 109.49929 * 178.68998 * 19 9 8 36 36 H 1.09000 * 109.50112 * 58.58385 * 19 9 8 37 37 H 1.08996 * 109.58413 * 246.15631 * 20 6 4 38 38 H 1.09002 * 109.58057 * 6.43958 * 20 6 4 39 39 H 1.09005 * 117.49624 * 214.96642 * 21 2 1 40 40 H 1.08996 * 117.50141 * 359.97438 * 21 2 1 41 41 H 1.09000 * 117.50120 * 252.51012 * 22 21 2 42 42 H 1.09000 * 117.50592 * 107.48771 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3803 0.0000 4 6 2.2033 1.9308 -1.4028 5 8 1.6434 1.3301 -2.2953 6 7 2.8375 3.0906 -1.6656 7 6 3.5150 3.8328 -0.5937 8 6 2.9983 5.2703 -0.5805 9 6 3.1657 5.8831 -1.9729 10 7 2.6982 7.2714 -1.9542 11 6 3.5422 8.2728 -1.5541 12 1 4.5523 8.0391 -1.2519 13 6 3.0993 9.5883 -1.5370 14 7 1.8681 9.8731 -1.9049 15 14 4.2508 10.9545 -0.9919 16 1 5.5698 10.3755 -0.6309 17 1 4.4236 11.9278 -2.0999 18 1 3.6744 11.6459 0.1892 19 6 2.3452 5.0824 -2.9865 20 6 2.8589 3.6402 -3.0281 21 6 2.2368 -1.1210 0.7644 22 6 2.2364 -1.1207 -0.7655 23 1 -0.3633 0.5057 -0.8946 24 1 -0.3633 -1.0276 0.0093 25 1 -0.3634 0.5219 0.8853 26 1 1.6272 2.0520 0.6485 27 1 3.2128 1.2941 0.3662 28 1 3.3048 3.3616 0.3663 29 1 4.5900 3.8356 -0.7743 30 1 3.5641 5.8550 0.1447 31 1 1.9433 5.2725 -0.3066 32 1 4.2179 5.8581 -2.2565 33 1 1.7908 7.4813 -2.2253 34 1 1.5588 10.7923 -1.8933 35 1 2.4463 5.5332 -3.9738 36 1 1.2963 5.0863 -2.6899 37 1 3.8791 3.6268 -3.4114 38 1 2.2179 3.0403 -3.6741 39 1 3.1721 -0.8751 1.2675 40 1 1.6120 -1.8586 1.2679 41 1 1.6112 -1.8582 -1.2688 42 1 3.1712 -0.8746 -1.2691 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996818921.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:24:14 Heat of formation + Delta-G solvation = -9.633957 kcal Electronic energy + Delta-G solvation = -20636.819814 eV Core-core repulsion = 17617.417036 eV Total energy + Delta-G solvation = -3019.402777 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.22674 -38.21924 -36.89362 -34.46040 -32.16538 -31.12745 -29.73794 -29.05367 -28.00645 -24.79230 -22.97962 -22.67331 -22.47533 -20.60105 -19.39551 -18.41202 -17.13936 -16.93991 -15.91179 -15.58992 -14.91313 -14.79537 -14.41211 -13.87832 -13.75029 -13.45285 -13.39806 -13.25373 -12.77420 -12.53680 -12.33658 -12.02352 -11.91045 -11.61440 -11.56110 -11.26809 -10.97437 -10.88650 -10.83068 -10.49111 -10.35135 -10.21888 -9.96567 -9.83416 -9.69534 -9.42803 -8.93516 -8.44538 -7.00216 -5.80077 -3.09383 2.77110 3.08350 3.40417 3.45896 3.48351 3.71413 4.48942 4.55207 4.60103 4.68320 4.87332 4.93347 5.11436 5.31286 5.34838 5.36888 5.42852 5.46778 5.50655 5.52730 5.64487 5.71870 5.73254 5.79927 5.84867 5.92763 5.96871 6.02086 6.03506 6.20849 6.22806 6.37142 6.39531 6.50540 6.63903 6.89025 7.02584 7.57850 7.66438 8.33279 8.38137 9.49435 10.07103 10.41732 11.42535 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.040262 B = 0.003670 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.282330 B = 7628.548949 C = 7792.350782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.109 4.109 3 C -0.105 4.105 4 C 0.515 3.485 5 O -0.541 6.541 6 N -0.609 5.609 7 C 0.107 3.893 8 C -0.152 4.152 9 C 0.179 3.821 10 N -0.725 5.725 11 C -0.240 4.240 12 H 0.071 0.929 13 C -0.013 4.013 14 N -0.932 5.932 15 Si 0.906 3.094 16 H -0.280 1.280 17 H -0.292 1.292 18 H -0.292 1.292 19 C -0.139 4.139 20 C 0.116 3.884 21 C -0.180 4.180 22 C -0.156 4.156 23 H 0.067 0.933 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.098 0.902 27 H 0.090 0.910 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.059 0.941 32 H 0.047 0.953 33 H 0.384 0.616 34 H 0.255 0.745 35 H 0.075 0.925 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.087 0.913 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.555 -19.493 4.603 20.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.109 4.109 3 C -0.144 4.144 4 C 0.303 3.697 5 O -0.419 6.419 6 N -0.343 5.343 7 C -0.016 4.016 8 C -0.193 4.193 9 C 0.069 3.931 10 N -0.365 5.365 11 C -0.371 4.371 12 H 0.089 0.911 13 C -0.209 4.209 14 N -0.580 5.580 15 Si 0.737 3.263 16 H -0.205 1.205 17 H -0.219 1.219 18 H -0.219 1.219 19 C -0.178 4.178 20 C -0.006 4.006 21 C -0.217 4.217 22 C -0.194 4.194 23 H 0.086 0.914 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.117 0.883 27 H 0.109 0.891 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.217 0.783 34 H 0.065 0.935 35 H 0.094 0.906 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.106 0.894 39 H 0.110 0.890 40 H 0.112 0.888 41 H 0.111 0.889 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.407 -19.676 4.167 20.161 hybrid contribution 0.361 1.105 0.363 1.218 sum 1.768 -18.570 4.530 19.196 Atomic orbital electron populations 1.21292 0.91786 1.01663 1.02223 1.21046 0.95014 0.89463 1.05388 1.21249 1.02244 0.95876 0.95072 1.20557 0.77971 0.80358 0.90841 1.90657 1.44663 1.58944 1.47621 1.48214 1.53865 1.22144 1.10066 1.21767 0.96642 0.93580 0.89611 1.22597 1.01520 0.93087 1.02083 1.20160 0.96441 0.85365 0.91162 1.42452 1.14408 1.00076 1.79558 1.19278 0.94504 0.86747 1.36561 0.91110 1.24756 0.96543 0.97339 1.02310 1.69671 1.15826 1.18436 1.54078 0.86138 0.79844 0.82455 0.77866 1.20545 1.21870 1.21882 1.22190 1.00605 0.93880 1.01076 1.21573 1.01429 0.94637 0.83001 1.23167 1.02198 1.01295 0.95046 1.22860 1.02255 1.00924 0.93312 0.91380 0.92712 0.92514 0.88349 0.89131 0.90538 0.91594 0.90630 0.92229 0.93454 0.78268 0.93529 0.90641 0.91902 0.91806 0.89446 0.88953 0.88842 0.88927 0.89217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 9.66 37.16 0.36 -0.81 16 2 C -0.11 -1.14 1.59 -154.51 -0.25 -1.39 16 3 C -0.10 -1.12 4.01 -27.88 -0.11 -1.23 16 4 C 0.51 7.20 7.55 -10.99 -0.08 7.11 16 5 O -0.54 -9.13 14.38 5.56 0.08 -9.05 16 6 N -0.61 -8.42 2.98 -173.05 -0.52 -8.93 16 7 C 0.11 1.35 6.27 -3.93 -0.02 1.33 16 8 C -0.15 -2.48 5.64 -26.83 -0.15 -2.63 16 9 C 0.18 3.39 2.73 -67.89 -0.19 3.20 16 10 N -0.72 -17.70 5.12 -53.39 -0.27 -17.97 16 11 C -0.24 -6.47 9.93 -15.06 -0.15 -6.62 16 12 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 13 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 14 N -0.93 -27.87 13.06 55.49 0.72 -27.14 16 15 Si 0.91 21.99 29.55 -169.99 -5.02 16.97 16 16 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 17 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 18 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 19 C -0.14 -2.30 5.55 -26.63 -0.15 -2.44 16 20 C 0.12 1.68 6.43 -3.73 -0.02 1.66 16 21 C -0.18 -1.55 9.88 -26.74 -0.26 -1.82 16 22 C -0.16 -1.63 9.15 -26.73 -0.24 -1.88 16 23 H 0.07 0.84 7.62 -51.93 -0.40 0.45 16 24 H 0.05 0.50 8.11 -51.93 -0.42 0.08 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.10 0.97 7.91 -51.93 -0.41 0.56 16 27 H 0.09 0.81 7.47 -51.93 -0.39 0.42 16 28 H 0.08 0.78 5.95 -51.93 -0.31 0.47 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.05 0.91 8.08 -51.92 -0.42 0.49 16 33 H 0.38 10.11 7.80 -40.82 -0.32 9.79 16 34 H 0.25 7.37 8.31 -40.82 -0.34 7.04 16 35 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.09 1.31 7.00 -51.93 -0.36 0.95 16 39 H 0.09 0.71 8.08 -51.93 -0.42 0.29 16 40 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 42 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 335.89 15.07 5.06 5.06 Total: -1.00 -30.91 335.89 -8.53 -39.45 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -7.22 Total: 7.61 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: -1.37 Total: -5.99 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: -0.06 Total: -54.04 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: 0.08 Total: -9.05 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.91 -8.53 -39.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996818921.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.812 kcal (2) G-P(sol) polarization free energy of solvation -30.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds