Wall clock time and date at job start Mon Mar 30 2020 19:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53785 * 113.69093 * 2 1 4 4 C 1.53777 * 87.08241 * 89.12408 * 3 2 1 5 5 C 1.50703 * 113.61172 * 139.97748 * 4 3 2 6 6 O 1.21278 * 120.00105 * 262.50575 * 5 4 3 7 7 N 1.34774 * 119.99476 * 82.50631 * 5 4 3 8 8 C 1.46923 * 120.63545 * 359.71822 * 7 5 4 9 9 C 1.53627 * 108.54441 * 126.36773 * 8 7 5 10 10 C 1.53035 * 109.24272 * 54.85826 * 9 8 7 11 11 C 1.53043 * 109.53890 * 298.51496 * 10 9 8 12 12 H 1.09003 * 109.52143 * 301.39099 * 11 10 9 13 13 N 1.46501 * 109.49873 * 181.31662 * 11 10 9 14 14 C 1.36939 * 120.00079 * 85.15616 * 13 11 10 15 15 H 1.08004 * 120.00148 * 0.02562 * 14 13 11 16 16 C 1.38815 * 119.99898 * 179.97438 * 14 13 11 17 17 N 1.31616 * 119.99799 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99951 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47064 * 60.00269 * 18 16 14 20 20 H 1.48500 * 109.46991 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.46765 * 300.00294 * 18 16 14 22 22 C 1.46929 * 120.62495 * 179.97438 * 7 5 4 23 23 C 1.53781 * 113.61293 * 97.53625 * 2 1 3 24 24 H 1.09005 * 109.47494 * 320.93816 * 1 2 3 25 25 H 1.09002 * 109.47422 * 80.93625 * 1 2 3 26 26 H 1.09000 * 109.47785 * 200.93739 * 1 2 3 27 27 H 1.09002 * 112.85043 * 228.72884 * 2 1 3 28 28 H 1.08999 * 113.61060 * 203.67831 * 3 2 1 29 29 H 1.08997 * 113.61198 * 334.57624 * 3 2 1 30 30 H 1.08998 * 113.69520 * 270.87557 * 4 3 2 31 31 H 1.09002 * 109.58755 * 246.20493 * 8 7 5 32 32 H 1.09004 * 109.58201 * 6.63107 * 8 7 5 33 33 H 1.08998 * 109.63457 * 294.86895 * 9 8 7 34 34 H 1.09004 * 109.45659 * 174.74299 * 9 8 7 35 35 H 1.08997 * 109.46574 * 178.48986 * 10 9 8 36 36 H 1.09004 * 109.46264 * 58.52612 * 10 9 8 37 37 H 0.97003 * 120.00026 * 265.15284 * 13 11 10 38 38 H 0.97004 * 119.99540 * 179.97438 * 17 16 14 39 39 H 1.08998 * 109.59274 * 353.37754 * 22 7 5 40 40 H 1.09004 * 109.58451 * 113.66102 * 22 7 5 41 41 H 1.09000 * 113.61578 * 25.34425 * 23 2 1 42 42 H 1.09001 * 113.61682 * 156.17004 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1479 1.4082 0.0000 4 6 2.0949 1.3460 1.5356 5 6 3.3108 1.9322 2.2058 6 8 4.2085 1.2058 2.5762 7 7 3.4005 3.2638 2.3934 8 6 2.3240 4.1573 1.9446 9 6 1.8807 5.0238 3.1332 10 6 3.0985 5.7485 3.7109 11 6 4.1135 4.7206 4.2165 12 1 3.6477 4.0912 4.9748 13 7 5.2649 5.4154 4.7978 14 6 5.2300 5.8239 6.1044 15 1 4.3538 5.6335 6.7065 16 6 6.3212 6.4817 6.6553 17 7 7.3891 6.7133 5.9216 18 14 6.2739 7.0383 8.4378 19 1 6.0834 5.8588 9.3197 20 1 7.5524 7.7117 8.7802 21 1 5.1480 7.9873 8.6303 22 6 4.5793 3.8501 3.0457 23 6 2.1459 -0.1848 1.3969 24 1 -0.3634 0.7980 0.6476 25 1 -0.3634 0.1619 -1.0148 26 1 -0.3635 -0.9598 0.3672 27 1 1.9532 -0.6626 -0.7550 28 1 3.1609 1.4405 -0.4011 29 1 1.4973 2.1705 -0.4288 30 1 1.1600 1.7153 1.9570 31 1 2.6901 4.7953 1.1402 32 1 1.4815 3.5642 1.5887 33 1 1.4354 4.3916 3.9014 34 1 1.1479 5.7565 2.7952 35 1 2.7839 6.3851 4.5378 36 1 3.5581 6.3613 2.9355 37 1 6.0520 5.5861 4.2571 38 1 8.1515 7.1734 6.3065 39 1 5.2254 3.0544 3.4164 40 1 5.1273 4.4615 2.3288 41 1 1.4938 -0.7085 2.0959 42 1 3.1579 -0.5893 1.3778 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998878607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:24:31 Heat of formation + Delta-G solvation = -14.567973 kcal Electronic energy + Delta-G solvation = -20811.147867 eV Core-core repulsion = 17791.531135 eV Total energy + Delta-G solvation = -3019.616732 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.61431 -38.53038 -36.93586 -34.44773 -32.16179 -31.24574 -29.94521 -28.31211 -25.85632 -25.76059 -24.42013 -23.35322 -22.02159 -20.27986 -19.15868 -18.47302 -17.35457 -17.16869 -15.93830 -15.55895 -14.73221 -14.42704 -14.37279 -14.02291 -13.85229 -13.55071 -13.45092 -12.96832 -12.88686 -12.73895 -12.49620 -12.35742 -12.18690 -11.47003 -11.12900 -11.06918 -10.91825 -10.88259 -10.66739 -10.47157 -10.44173 -10.38988 -10.32726 -10.08747 -9.71051 -9.41172 -8.90052 -8.34913 -6.98149 -5.76954 -3.06535 2.78627 3.19262 3.44513 3.48927 3.49949 4.28663 4.38097 4.47179 4.55247 4.59660 4.81675 5.00915 5.15632 5.17763 5.28275 5.32958 5.42975 5.50419 5.53953 5.58491 5.61354 5.66510 5.74294 5.77185 5.80611 5.84251 5.92652 6.04311 6.06917 6.18060 6.24671 6.28701 6.40622 6.56784 6.74677 6.90112 7.06098 7.65140 7.69338 8.38522 8.42067 9.52134 10.07696 10.42881 11.45546 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.038819 B = 0.003935 C = 0.003801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.128444 B = 7114.824521 C = 7365.588081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.117 4.117 3 C -0.118 4.118 4 C -0.136 4.136 5 C 0.520 3.480 6 O -0.543 6.543 7 N -0.604 5.604 8 C 0.109 3.891 9 C -0.134 4.134 10 C -0.137 4.137 11 C 0.169 3.831 12 H 0.049 0.951 13 N -0.721 5.721 14 C -0.240 4.240 15 H 0.070 0.930 16 C -0.012 4.012 17 N -0.932 5.932 18 Si 0.908 3.092 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.286 1.286 22 C 0.105 3.895 23 C -0.114 4.114 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.111 0.889 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.056 0.944 37 H 0.384 0.616 38 H 0.256 0.744 39 H 0.091 0.909 40 H 0.063 0.937 41 H 0.070 0.930 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.454 -9.358 -13.750 22.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.135 4.135 3 C -0.156 4.156 4 C -0.157 4.157 5 C 0.308 3.692 6 O -0.421 6.421 7 N -0.337 5.337 8 C -0.014 4.014 9 C -0.173 4.173 10 C -0.178 4.178 11 C 0.058 3.942 12 H 0.067 0.933 13 N -0.362 5.362 14 C -0.371 4.371 15 H 0.088 0.912 16 C -0.208 4.208 17 N -0.580 5.580 18 Si 0.739 3.261 19 H -0.212 1.212 20 H -0.217 1.217 21 H -0.213 1.213 22 C -0.018 4.018 23 C -0.152 4.152 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.097 0.903 28 H 0.103 0.897 29 H 0.093 0.907 30 H 0.128 0.872 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.218 0.782 38 H 0.066 0.934 39 H 0.110 0.890 40 H 0.081 0.919 41 H 0.089 0.911 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -14.968 -9.698 -13.352 22.280 hybrid contribution 0.232 0.686 0.883 1.142 sum -14.736 -9.011 -12.469 21.304 Atomic orbital electron populations 1.21607 0.93784 1.02032 1.01797 1.22322 0.95805 0.97267 0.98154 1.22908 1.01830 0.97580 0.93264 1.22757 0.97509 0.98362 0.97066 1.20479 0.88246 0.81715 0.78773 1.90679 1.40993 1.59269 1.51143 1.48125 1.20802 1.05968 1.58799 1.21843 0.89753 0.92812 0.96967 1.22019 0.98914 0.98869 0.97465 1.22277 0.95417 0.99491 1.00574 1.20463 0.89430 0.91701 0.92618 0.93288 1.42308 1.14929 1.67931 1.11063 1.19168 1.00065 1.30243 0.87606 0.91224 1.24748 0.96336 1.01523 0.98199 1.69653 1.05614 1.47047 1.35725 0.86258 0.76662 0.78384 0.84821 1.21220 1.21666 1.21268 1.21978 0.86883 0.97937 0.94974 1.22894 1.02391 0.93636 0.96254 0.92441 0.92418 0.92260 0.90304 0.89676 0.90729 0.87152 0.91472 0.90271 0.91893 0.91434 0.91608 0.92501 0.78203 0.93407 0.89031 0.91853 0.91106 0.88699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.88 9.59 37.16 0.36 -0.52 16 2 C -0.12 -0.94 4.54 -89.81 -0.41 -1.35 16 3 C -0.12 -1.05 7.05 -25.92 -0.18 -1.23 16 4 C -0.14 -1.47 2.39 -90.95 -0.22 -1.69 16 5 C 0.52 8.02 7.22 -10.99 -0.08 7.94 16 6 O -0.54 -10.63 15.31 5.56 0.09 -10.55 16 7 N -0.60 -9.10 2.97 -172.52 -0.51 -9.61 16 8 C 0.11 1.26 6.37 -3.49 -0.02 1.24 16 9 C -0.13 -1.71 6.10 -26.39 -0.16 -1.87 16 10 C -0.14 -2.36 5.47 -26.69 -0.15 -2.50 16 11 C 0.17 3.43 2.92 -67.83 -0.20 3.23 16 12 H 0.05 1.07 8.08 -51.93 -0.42 0.65 16 13 N -0.72 -18.27 5.12 -53.32 -0.27 -18.55 16 14 C -0.24 -6.71 9.93 -15.06 -0.15 -6.86 16 15 H 0.07 1.90 7.83 -52.48 -0.41 1.48 16 16 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 17 N -0.93 -28.33 13.06 55.49 0.72 -27.60 16 18 Si 0.91 22.56 29.55 -169.99 -5.02 17.53 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 20 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 C 0.11 1.93 5.90 -3.73 -0.02 1.90 16 23 C -0.11 -1.18 6.99 -25.91 -0.18 -1.36 16 24 H 0.06 0.36 7.34 -51.93 -0.38 -0.02 16 25 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.08 0.84 8.09 -51.93 -0.42 0.42 16 29 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 30 H 0.11 1.02 6.72 -51.93 -0.35 0.67 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.08 0.70 5.68 -51.93 -0.30 0.41 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.38 10.30 7.80 -40.82 -0.32 9.98 16 38 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 39 H 0.09 1.91 7.01 -51.93 -0.36 1.54 16 40 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 42 H 0.09 1.16 7.44 -51.93 -0.39 0.78 16 LS Contribution 331.08 15.07 4.99 4.99 Total: -1.00 -32.06 331.08 -8.64 -40.70 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -7.13 Total: 6.57 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: -1.51 Total: -3.50 kcal Atomic # 7 Polarization: -55.69 SS G_CDS: -0.06 Total: -55.76 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.09 Total: -10.55 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.06 -8.64 -40.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998878607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.135 kcal (2) G-P(sol) polarization free energy of solvation -32.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds