Wall clock time and date at job start Mon Mar 30 2020 19:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 110.05742 * 2 1 4 4 C 1.54474 * 109.85414 * 238.58730 * 2 1 3 5 5 C 1.54880 * 104.09939 * 264.10058 * 4 2 1 6 6 C 1.54887 * 102.92074 * 322.30266 * 5 4 2 7 7 C 1.53868 * 110.03410 * 121.42080 * 2 1 3 8 8 H 1.08995 * 110.03339 * 238.56853 * 7 2 1 9 9 C 1.50702 * 110.07038 * 359.97438 * 7 2 1 10 10 O 1.21280 * 120.00103 * 86.11254 * 9 7 2 11 11 N 1.34770 * 120.00197 * 266.10279 * 9 7 2 12 12 C 1.46492 * 120.00367 * 180.02562 * 11 9 7 13 13 C 1.53948 * 113.74692 * 251.67846 * 12 11 9 14 14 N 1.47582 * 86.12024 * 222.04730 * 13 12 11 15 15 C 1.36936 * 134.49426 * 204.63942 * 14 13 12 16 16 H 1.07992 * 119.99967 * 180.02562 * 15 14 13 17 17 C 1.38813 * 119.99629 * 0.04662 * 15 14 13 18 18 N 1.31619 * 120.00033 * 352.25953 * 17 15 14 19 19 Si 1.86799 * 119.99870 * 172.25096 * 17 15 14 20 20 H 1.48499 * 109.46877 * 94.94597 * 19 17 15 21 21 H 1.48500 * 109.47317 * 214.94568 * 19 17 15 22 22 H 1.48504 * 109.47455 * 334.94811 * 19 17 15 23 23 C 1.47586 * 91.01513 * 24.63709 * 14 13 12 24 24 H 1.09000 * 109.46617 * 296.09952 * 1 2 3 25 25 H 1.09002 * 109.46948 * 56.08973 * 1 2 3 26 26 H 1.08999 * 109.47023 * 176.09589 * 1 2 3 27 27 H 1.08995 * 109.46853 * 181.41809 * 3 2 1 28 28 H 1.08998 * 109.46983 * 301.42369 * 3 2 1 29 29 H 1.08996 * 109.46576 * 61.41811 * 3 2 1 30 30 H 1.09003 * 110.40058 * 145.51868 * 4 2 1 31 31 H 1.09006 * 110.65753 * 22.81711 * 4 2 1 32 32 H 1.09002 * 110.75596 * 203.89077 * 5 4 2 33 33 H 1.09000 * 110.75551 * 80.71231 * 5 4 2 34 34 H 1.08993 * 110.49162 * 156.52534 * 6 5 4 35 35 H 1.08998 * 110.48382 * 279.04014 * 6 5 4 36 36 H 0.97004 * 120.00115 * 0.02562 * 11 9 7 37 37 H 1.08999 * 112.94836 * 23.41187 * 12 11 9 38 38 H 1.08998 * 113.76467 * 336.34873 * 13 12 11 39 39 H 1.08999 * 113.76960 * 107.74146 * 13 12 11 40 40 H 0.97009 * 119.99609 * 180.02562 * 18 17 15 41 41 H 1.08994 * 113.76706 * 221.05736 * 23 14 13 42 42 H 1.09003 * 113.76484 * 89.65994 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0548 1.4373 0.0000 4 6 2.0547 -0.7573 -1.2400 5 6 2.3280 -2.1901 -0.7193 6 6 2.8875 -1.9408 0.7033 7 6 2.0572 -0.7536 1.2336 8 1 2.6868 -0.0955 1.8323 9 6 0.9045 -1.2592 2.0624 10 8 0.3943 -2.3285 1.8032 11 7 0.4406 -0.5231 3.0916 12 6 -0.6795 -1.0148 3.8976 13 6 -1.9941 -0.2481 3.6651 14 7 -2.1708 -0.3077 5.1291 15 6 -3.2520 -0.2589 5.9680 16 1 -3.1098 -0.3249 7.0365 17 6 -4.5308 -0.1249 5.4449 18 7 -4.6951 0.1078 4.1599 19 14 -6.0184 -0.2752 6.5646 20 1 -6.4411 1.0769 7.0102 21 1 -7.1313 -0.9230 5.8251 22 1 -5.6655 -1.0987 7.7489 23 6 -0.7142 -0.4412 5.3259 24 1 -0.3632 0.4521 0.9229 25 1 -0.3633 0.5733 -0.8529 26 1 -0.3633 -1.0253 -0.0700 27 1 3.1444 1.4262 -0.0254 28 1 1.6761 1.9623 -0.8769 29 1 1.7175 1.9471 0.9024 30 1 2.9758 -0.3008 -1.6023 31 1 1.3010 -0.7746 -2.0273 32 1 3.0675 -2.6930 -1.3426 33 1 1.4048 -2.7679 -0.6756 34 1 2.7402 -2.8197 1.3307 35 1 3.9446 -1.6791 0.6570 36 1 0.8485 0.3323 3.2988 37 1 -0.7886 -2.0985 3.8573 38 1 -1.8515 0.7618 3.2806 39 1 -2.7407 -0.8149 3.1090 40 1 -5.5888 0.2018 3.7945 41 1 -0.4392 -1.1621 6.0957 42 1 -0.1958 0.5121 5.4292 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030802471.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:23:20 Heat of formation + Delta-G solvation = -1.390775 kcal Electronic energy + Delta-G solvation = -21168.832449 eV Core-core repulsion = 18149.787123 eV Total energy + Delta-G solvation = -3019.045326 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -40.49787 -38.30111 -36.88450 -33.49787 -32.20304 -31.77254 -29.36305 -27.46880 -27.18394 -24.82446 -24.76361 -23.19288 -21.32742 -20.14696 -19.62626 -18.42874 -16.93073 -16.77003 -15.80910 -15.17977 -15.04429 -14.78561 -14.32266 -13.83863 -13.58525 -13.40301 -13.13753 -12.99506 -12.55351 -12.07018 -11.92860 -11.67772 -11.47925 -11.36417 -11.28627 -11.09212 -10.94686 -10.87608 -10.72349 -10.63026 -10.53349 -10.51829 -10.34853 -10.05416 -9.55469 -9.24839 -8.75908 -8.36174 -6.93112 -5.78947 -3.10616 2.99792 3.38688 3.44142 3.47033 3.58813 4.40430 4.45777 4.53488 4.68530 5.09603 5.19125 5.20655 5.29756 5.32846 5.37272 5.47075 5.47973 5.59654 5.61184 5.68873 5.75760 5.85454 5.92531 5.94564 6.02772 6.07788 6.10838 6.22285 6.24466 6.30926 6.36113 6.43438 6.51668 6.57937 6.82940 7.22627 7.39317 7.54343 7.95244 7.97311 8.65732 9.02578 9.69036 10.56267 11.38704 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.035461 B = 0.004299 C = 0.004179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.419613 B = 6512.319202 C = 6699.126223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.053 4.053 3 C -0.140 4.140 4 C -0.114 4.114 5 C -0.122 4.122 6 C -0.105 4.105 7 C -0.108 4.108 8 H 0.087 0.913 9 C 0.524 3.476 10 O -0.543 6.543 11 N -0.718 5.718 12 C 0.092 3.908 13 C 0.158 3.842 14 N -0.607 5.607 15 C -0.227 4.227 16 H 0.082 0.918 17 C -0.005 4.005 18 N -0.918 5.918 19 Si 0.912 3.088 20 H -0.289 1.289 21 H -0.289 1.289 22 H -0.279 1.279 23 C 0.111 3.889 24 H 0.064 0.936 25 H 0.055 0.945 26 H 0.067 0.933 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.395 0.605 37 H 0.110 0.890 38 H 0.029 0.971 39 H 0.070 0.930 40 H 0.254 0.746 41 H 0.049 0.951 42 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.732 0.876 -9.241 19.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.053 4.053 3 C -0.197 4.197 4 C -0.151 4.151 5 C -0.160 4.160 6 C -0.143 4.143 7 C -0.129 4.129 8 H 0.105 0.895 9 C 0.310 3.690 10 O -0.420 6.420 11 N -0.368 5.368 12 C -0.013 4.013 13 C 0.032 3.968 14 N -0.333 5.333 15 C -0.354 4.354 16 H 0.099 0.901 17 C -0.202 4.202 18 N -0.564 5.564 19 Si 0.742 3.258 20 H -0.216 1.216 21 H -0.215 1.215 22 H -0.205 1.205 23 C -0.016 4.016 24 H 0.082 0.918 25 H 0.074 0.926 26 H 0.086 0.914 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.228 0.772 37 H 0.128 0.872 38 H 0.046 0.954 39 H 0.088 0.912 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 15.989 0.117 -9.323 18.509 hybrid contribution -0.714 0.678 0.759 1.243 sum 15.276 0.796 -8.564 17.531 Atomic orbital electron populations 1.22120 0.93486 1.03122 1.02360 1.21087 0.96281 0.94719 0.93234 1.21943 1.00525 0.95079 1.02163 1.22522 1.00526 0.95435 0.96636 1.22471 1.01362 0.96714 0.95413 1.22207 0.97849 0.97134 0.97083 1.22110 0.95750 0.98513 0.96565 0.89497 1.20347 0.84010 0.84479 0.80121 1.90670 1.59731 1.22553 1.69078 1.46222 1.35727 1.22898 1.31948 1.23819 0.86399 1.00368 0.90735 1.22597 0.91488 0.96103 0.86634 1.45747 0.99463 1.85341 1.02781 1.18991 0.83567 1.44033 0.88836 0.90061 1.24804 0.97351 1.01772 0.96273 1.69855 1.21295 1.54038 1.11247 0.86104 0.82570 0.77631 0.79455 1.21640 1.21513 1.20467 1.22880 0.87375 0.97043 0.94293 0.91750 0.92626 0.91372 0.92589 0.92370 0.92400 0.91670 0.91464 0.91937 0.90602 0.90814 0.91446 0.77190 0.87239 0.95370 0.91181 0.93557 0.93317 0.94849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 7.19 37.16 0.27 -1.81 16 2 C -0.05 -0.58 0.94 -153.28 -0.14 -0.72 16 3 C -0.14 -1.26 8.17 37.16 0.30 -0.96 16 4 C -0.11 -1.13 5.92 -24.97 -0.15 -1.28 16 5 C -0.12 -1.31 6.84 -24.74 -0.17 -1.48 16 6 C -0.10 -1.15 6.04 -25.07 -0.15 -1.30 16 7 C -0.11 -1.25 2.94 -90.65 -0.27 -1.52 16 8 H 0.09 0.83 7.67 -51.93 -0.40 0.44 16 9 C 0.52 8.13 4.61 -10.99 -0.05 8.08 16 10 O -0.54 -10.52 14.85 5.56 0.08 -10.43 16 11 N -0.72 -11.09 4.88 -55.33 -0.27 -11.36 16 12 C 0.09 1.80 4.43 -70.13 -0.31 1.49 16 13 C 0.16 3.81 7.24 -2.97 -0.02 3.79 16 14 N -0.61 -15.72 3.70 -178.05 -0.66 -16.38 16 15 C -0.23 -6.43 10.69 -15.06 -0.16 -6.60 16 16 H 0.08 2.21 7.84 -52.49 -0.41 1.80 16 17 C -0.01 -0.14 5.49 -17.43 -0.10 -0.24 16 18 N -0.92 -27.68 11.52 55.49 0.64 -27.04 16 19 Si 0.91 22.31 29.56 -169.99 -5.02 17.29 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 23 C 0.11 2.25 8.69 -2.97 -0.03 2.22 16 24 H 0.06 0.96 7.01 -51.93 -0.36 0.60 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.07 1.08 7.07 -51.93 -0.37 0.71 16 27 H 0.06 0.43 8.12 -51.93 -0.42 0.01 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.55 7.84 -51.93 -0.41 0.14 16 31 H 0.07 0.67 7.84 -51.93 -0.41 0.26 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.99 8.11 -51.93 -0.42 0.56 16 34 H 0.07 0.93 7.48 -51.93 -0.39 0.54 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.39 5.04 8.73 -40.82 -0.36 4.68 16 37 H 0.11 2.35 7.46 -51.93 -0.39 1.97 16 38 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.07 1.92 7.35 -51.93 -0.38 1.54 16 40 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 41 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.03 0.62 8.12 -51.93 -0.42 0.20 16 LS Contribution 330.99 15.07 4.99 4.99 Total: -1.00 -32.33 330.99 -8.45 -40.77 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -7.23 Total: 2.49 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: -0.97 Total: -0.32 kcal Atomic # 7 Polarization: -54.50 SS G_CDS: -0.29 Total: -54.78 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.08 Total: -10.43 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.33 -8.45 -40.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030802471.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.381 kcal (2) G-P(sol) polarization free energy of solvation -32.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds