Wall clock time and date at job start Mon Mar 30 2020 19:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53787 * 113.61175 * 2 1 4 4 C 1.53775 * 87.07975 * 89.19766 * 3 2 1 5 5 C 1.50700 * 113.61350 * 139.97847 * 4 3 2 6 6 O 1.21283 * 119.99789 * 1.53434 * 5 4 3 7 7 N 1.34778 * 120.00407 * 181.52638 * 5 4 3 8 8 C 1.46501 * 120.00542 * 180.02562 * 7 5 4 9 9 C 1.53002 * 110.63743 * 61.68644 * 8 7 5 10 10 C 1.55153 * 110.87349 * 184.93839 * 8 7 5 11 11 C 1.55131 * 101.48647 * 82.76438 * 10 8 7 12 12 N 1.47426 * 104.71847 * 37.29562 * 11 10 8 13 13 C 1.36945 * 125.64675 * 155.81671 * 12 11 10 14 14 H 1.07997 * 119.99756 * 179.68946 * 13 12 11 15 15 C 1.38805 * 119.99878 * 359.68852 * 13 12 11 16 16 N 1.31624 * 120.00257 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99929 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47187 * 179.97438 * 17 15 13 19 19 H 1.48494 * 109.47141 * 300.00154 * 17 15 13 20 20 H 1.48498 * 109.47018 * 60.00200 * 17 15 13 21 21 C 1.47026 * 108.70569 * 335.55014 * 12 11 10 22 22 C 1.53782 * 87.17665 * 25.39170 * 4 3 2 23 23 H 1.09007 * 109.46992 * 60.00626 * 1 2 3 24 24 H 1.09000 * 109.46909 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47367 * 299.99858 * 1 2 3 26 26 H 1.09000 * 112.85018 * 228.80650 * 2 1 3 27 27 H 1.08998 * 113.61350 * 334.64759 * 3 2 1 28 28 H 1.09000 * 113.61175 * 203.74658 * 3 2 1 29 29 H 1.09002 * 113.61867 * 270.79752 * 4 3 2 30 30 H 0.97002 * 119.99525 * 0.02562 * 7 5 4 31 31 H 1.08994 * 109.47385 * 298.31171 * 9 8 7 32 32 H 1.09001 * 109.47019 * 58.32004 * 9 8 7 33 33 H 1.09001 * 109.46551 * 178.31145 * 9 8 7 34 34 H 1.08999 * 111.00098 * 201.00812 * 10 8 7 35 35 H 1.08999 * 111.00564 * 324.85460 * 10 8 7 36 36 H 1.08994 * 110.50226 * 278.45550 * 11 10 8 37 37 H 1.09001 * 110.34274 * 156.05220 * 11 10 8 38 38 H 0.97001 * 119.99885 * 179.97438 * 16 15 13 39 39 H 1.09003 * 109.87851 * 120.70448 * 21 12 11 40 40 H 1.08997 * 109.87950 * 241.87026 * 21 12 11 41 41 H 1.08993 * 113.61559 * 89.15541 * 22 4 3 42 42 H 1.08996 * 113.61334 * 220.06472 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1460 1.4091 0.0000 4 6 2.0949 1.3459 1.5356 5 6 3.3107 1.9335 2.2047 6 8 4.1958 2.4211 1.5340 7 7 3.4145 1.9172 3.5484 8 6 4.5961 2.4889 4.1989 9 6 4.7130 3.9825 3.8886 10 6 4.5545 2.2481 5.7311 11 6 5.1122 0.8040 5.8321 12 7 6.1623 0.7349 4.7996 13 6 7.2268 -0.1266 4.8004 14 1 7.9422 -0.1016 3.9917 15 6 7.3864 -1.0317 5.8406 16 7 6.5142 -1.0624 6.8259 17 14 8.8381 -2.2073 5.8413 18 1 8.7808 -3.0639 7.0529 19 1 8.7841 -3.0613 4.6276 20 1 10.1038 -1.4307 5.8442 21 6 5.8738 1.7397 3.7657 22 6 2.1467 -0.1849 1.3985 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.9533 -0.6615 -0.7558 27 1 1.4939 2.1707 -0.4276 28 1 3.1585 1.4430 -0.4022 29 1 1.1599 1.7152 1.9570 30 1 2.7067 1.5270 4.0848 31 1 4.8303 4.1223 2.8140 32 1 3.8120 4.4952 4.2255 33 1 5.5800 4.3941 4.4053 34 1 5.1964 2.9560 6.2553 35 1 3.5325 2.2975 6.1068 36 1 4.3276 0.0764 5.6245 37 1 5.5395 0.6310 6.8198 38 1 6.6255 -1.6953 7.5526 39 1 6.7055 2.4399 3.6871 40 1 5.7085 1.2481 2.8071 41 1 3.1594 -0.5875 1.3794 42 1 1.4952 -0.7082 2.0982 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046227135.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:26:09 Heat of formation + Delta-G solvation = 2.057035 kcal Electronic energy + Delta-G solvation = -21294.420402 eV Core-core repulsion = 18275.524584 eV Total energy + Delta-G solvation = -3018.895818 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.37165 -38.59384 -36.76185 -33.93343 -31.87158 -30.21273 -29.33409 -28.60021 -25.67669 -25.65150 -24.92201 -23.48084 -20.86618 -20.26699 -18.93256 -18.54022 -17.41234 -16.71790 -15.61810 -15.20937 -14.70322 -14.62922 -14.24159 -13.67518 -13.56739 -13.28174 -12.86373 -12.70051 -12.46016 -12.35225 -12.15513 -11.94585 -11.70934 -11.51602 -11.25862 -10.96254 -10.91299 -10.82484 -10.37943 -10.33250 -10.29557 -10.26441 -10.08633 -9.84397 -9.61204 -9.07531 -8.61863 -8.53544 -6.77579 -5.62067 -3.02420 3.00064 3.43078 3.46872 3.48456 3.56394 4.45816 4.52461 4.54431 4.70892 4.74865 5.10226 5.27851 5.34912 5.41342 5.44366 5.54245 5.61163 5.62958 5.64681 5.78042 5.82489 5.82718 5.99465 6.04556 6.07921 6.19595 6.21713 6.27412 6.40180 6.43084 6.50032 6.56257 6.75911 6.88784 7.22524 7.48645 7.66318 7.84435 7.97132 8.38762 8.65731 9.26423 9.87244 10.52531 11.42017 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.020276 B = 0.005452 C = 0.004795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.579990 B = 5134.643272 C = 5837.508484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.118 4.118 3 C -0.111 4.111 4 C -0.137 4.137 5 C 0.523 3.477 6 O -0.540 6.540 7 N -0.707 5.707 8 C 0.158 3.842 9 C -0.148 4.148 10 C -0.147 4.147 11 C 0.153 3.847 12 N -0.604 5.604 13 C -0.217 4.217 14 H 0.075 0.925 15 C -0.013 4.013 16 N -0.926 5.926 17 Si 0.914 3.086 18 H -0.290 1.290 19 H -0.286 1.286 20 H -0.285 1.285 21 C 0.137 3.863 22 C -0.118 4.118 23 H 0.057 0.943 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.078 0.922 27 H 0.068 0.932 28 H 0.094 0.906 29 H 0.107 0.893 30 H 0.396 0.604 31 H 0.070 0.930 32 H 0.048 0.952 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.061 0.939 36 H 0.010 0.990 37 H 0.108 0.892 38 H 0.251 0.749 39 H 0.028 0.972 40 H 0.034 0.966 41 H 0.088 0.912 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.010 5.407 -8.069 16.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.137 4.137 3 C -0.149 4.149 4 C -0.159 4.159 5 C 0.309 3.691 6 O -0.417 6.417 7 N -0.358 5.358 8 C 0.072 3.928 9 C -0.207 4.207 10 C -0.186 4.186 11 C 0.028 3.972 12 N -0.330 5.330 13 C -0.346 4.346 14 H 0.093 0.907 15 C -0.207 4.207 16 N -0.575 5.575 17 Si 0.744 3.256 18 H -0.216 1.216 19 H -0.213 1.213 20 H -0.212 1.212 21 C 0.011 3.989 22 C -0.156 4.156 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.097 0.903 27 H 0.087 0.913 28 H 0.113 0.887 29 H 0.125 0.875 30 H 0.230 0.770 31 H 0.089 0.911 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.028 0.972 37 H 0.125 0.875 38 H 0.062 0.938 39 H 0.046 0.954 40 H 0.052 0.948 41 H 0.106 0.894 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -12.258 5.591 -8.411 15.883 hybrid contribution 0.339 -0.870 0.351 0.998 sum -11.919 4.721 -8.060 15.143 Atomic orbital electron populations 1.21602 0.93944 1.01767 1.01805 1.22364 0.95662 0.97882 0.97787 1.22852 1.02275 0.96392 0.93352 1.22764 0.97367 0.97986 0.97751 1.20364 0.87939 0.78608 0.82177 1.90641 1.41256 1.45806 1.64017 1.46008 1.22422 1.60924 1.06399 1.21326 0.85711 0.92409 0.93379 1.22025 1.01141 0.94373 1.03139 1.23384 1.00514 1.02180 0.92474 1.21976 0.89821 0.88300 0.97060 1.44507 1.26969 1.39550 1.21987 1.19054 1.00261 1.09988 1.05251 0.90664 1.24745 0.98972 0.99773 0.97257 1.69765 1.36379 1.39220 1.12113 0.86155 0.81973 0.80601 0.76823 1.21590 1.21312 1.21179 1.21594 0.92829 0.91496 0.92994 1.22927 1.02213 0.93436 0.97046 0.92423 0.92446 0.92510 0.90345 0.91344 0.88712 0.87507 0.77015 0.91133 0.93264 0.91888 0.90631 0.92032 0.97218 0.87457 0.93798 0.95388 0.94841 0.89355 0.90743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.10 9.59 37.16 0.36 -0.74 16 2 C -0.12 -1.21 4.55 -89.71 -0.41 -1.62 16 3 C -0.11 -1.29 6.99 -25.92 -0.18 -1.47 16 4 C -0.14 -1.68 3.79 -90.96 -0.34 -2.03 16 5 C 0.52 8.50 6.58 -10.98 -0.07 8.43 16 6 O -0.54 -10.59 12.86 5.56 0.07 -10.51 16 7 N -0.71 -11.39 5.15 -45.91 -0.24 -11.62 16 8 C 0.16 2.89 0.81 -129.99 -0.10 2.79 16 9 C -0.15 -2.41 8.40 37.16 0.31 -2.10 16 10 C -0.15 -2.71 6.11 -24.46 -0.15 -2.86 16 11 C 0.15 3.68 5.89 -2.41 -0.01 3.67 16 12 N -0.60 -15.91 3.39 -169.93 -0.58 -16.48 16 13 C -0.22 -6.24 10.27 -15.06 -0.15 -6.39 16 14 H 0.08 2.13 7.83 -52.49 -0.41 1.71 16 15 C -0.01 -0.36 5.49 -17.43 -0.10 -0.45 16 16 N -0.93 -27.02 10.08 55.49 0.56 -26.46 16 17 Si 0.91 22.47 29.55 -169.99 -5.02 17.45 16 18 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 C 0.14 3.15 6.13 -3.06 -0.02 3.13 16 22 C -0.12 -1.42 7.20 -25.83 -0.19 -1.61 16 23 H 0.06 0.43 8.14 -51.92 -0.42 0.00 16 24 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.44 7.35 -51.93 -0.38 0.06 16 26 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 28 H 0.09 1.30 7.45 -51.93 -0.39 0.91 16 29 H 0.11 1.07 7.66 -51.93 -0.40 0.67 16 30 H 0.40 5.50 8.48 -40.82 -0.35 5.15 16 31 H 0.07 1.24 6.44 -51.93 -0.33 0.91 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.99 8.13 -51.93 -0.42 0.57 16 34 H 0.08 1.38 8.04 -51.93 -0.42 0.96 16 35 H 0.06 0.96 8.05 -51.93 -0.42 0.54 16 36 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 37 H 0.11 2.90 5.86 -51.93 -0.30 2.60 16 38 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 39 H 0.03 0.66 7.82 -51.93 -0.41 0.25 16 40 H 0.03 0.83 6.48 -51.93 -0.34 0.50 16 41 H 0.09 1.27 8.09 -51.93 -0.42 0.85 16 42 H 0.07 0.81 8.10 -51.93 -0.42 0.38 16 LS Contribution 327.04 15.07 4.93 4.93 Total: -1.00 -31.75 327.04 -8.41 -40.16 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -7.07 Total: 3.80 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -1.06 Total: -1.26 kcal Atomic # 7 Polarization: -54.31 SS G_CDS: -0.25 Total: -54.56 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.07 Total: -10.51 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.75 -8.41 -40.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046227135.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.214 kcal (2) G-P(sol) polarization free energy of solvation -31.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds