Wall clock time and date at job start Mon Mar 30 2020 19:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53787 * 113.61175 * 2 1 4 4 C 1.53775 * 87.07975 * 89.19766 * 3 2 1 5 5 C 1.50700 * 113.61350 * 139.97847 * 4 3 2 6 6 O 1.21283 * 119.99789 * 1.53434 * 5 4 3 7 7 N 1.34778 * 120.00407 * 181.52638 * 5 4 3 8 8 C 1.46501 * 120.00542 * 180.02562 * 7 5 4 9 9 C 1.53002 * 110.63743 * 61.68644 * 8 7 5 10 10 C 1.55153 * 110.87349 * 184.93839 * 8 7 5 11 11 C 1.55131 * 101.48647 * 82.76438 * 10 8 7 12 12 N 1.47426 * 104.71847 * 37.29562 * 11 10 8 13 13 C 1.36945 * 125.64675 * 155.81671 * 12 11 10 14 14 H 1.07997 * 119.99756 * 179.68946 * 13 12 11 15 15 C 1.38805 * 119.99878 * 359.68852 * 13 12 11 16 16 N 1.31624 * 120.00257 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99929 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47187 * 179.97438 * 17 15 13 19 19 H 1.48494 * 109.47141 * 300.00154 * 17 15 13 20 20 H 1.48498 * 109.47018 * 60.00200 * 17 15 13 21 21 C 1.47026 * 108.70569 * 335.55014 * 12 11 10 22 22 C 1.53782 * 87.17665 * 25.39170 * 4 3 2 23 23 H 1.09007 * 109.46992 * 60.00626 * 1 2 3 24 24 H 1.09000 * 109.46909 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47367 * 299.99858 * 1 2 3 26 26 H 1.09000 * 112.85018 * 228.80650 * 2 1 3 27 27 H 1.08998 * 113.61350 * 334.64759 * 3 2 1 28 28 H 1.09000 * 113.61175 * 203.74658 * 3 2 1 29 29 H 1.09002 * 113.61867 * 270.79752 * 4 3 2 30 30 H 0.97002 * 119.99525 * 0.02562 * 7 5 4 31 31 H 1.08994 * 109.47385 * 298.31171 * 9 8 7 32 32 H 1.09001 * 109.47019 * 58.32004 * 9 8 7 33 33 H 1.09001 * 109.46551 * 178.31145 * 9 8 7 34 34 H 1.08999 * 111.00098 * 201.00812 * 10 8 7 35 35 H 1.08999 * 111.00564 * 324.85460 * 10 8 7 36 36 H 1.08994 * 110.50226 * 278.45550 * 11 10 8 37 37 H 1.09001 * 110.34274 * 156.05220 * 11 10 8 38 38 H 0.97001 * 119.99885 * 179.97438 * 16 15 13 39 39 H 1.09003 * 109.87851 * 120.70448 * 21 12 11 40 40 H 1.08997 * 109.87950 * 241.87026 * 21 12 11 41 41 H 1.08993 * 113.61559 * 89.15541 * 22 4 3 42 42 H 1.08996 * 113.61334 * 220.06472 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1460 1.4091 0.0000 4 6 2.0949 1.3459 1.5356 5 6 3.3107 1.9335 2.2047 6 8 4.1958 2.4211 1.5340 7 7 3.4145 1.9172 3.5484 8 6 4.5961 2.4889 4.1989 9 6 4.7130 3.9825 3.8886 10 6 4.5545 2.2481 5.7311 11 6 5.1122 0.8040 5.8321 12 7 6.1623 0.7349 4.7996 13 6 7.2268 -0.1266 4.8004 14 1 7.9422 -0.1016 3.9917 15 6 7.3864 -1.0317 5.8406 16 7 6.5142 -1.0624 6.8259 17 14 8.8381 -2.2073 5.8413 18 1 8.7808 -3.0639 7.0529 19 1 8.7841 -3.0613 4.6276 20 1 10.1038 -1.4307 5.8442 21 6 5.8738 1.7397 3.7657 22 6 2.1467 -0.1849 1.3985 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.9533 -0.6615 -0.7558 27 1 1.4939 2.1707 -0.4276 28 1 3.1585 1.4430 -0.4022 29 1 1.1599 1.7152 1.9570 30 1 2.7067 1.5270 4.0848 31 1 4.8303 4.1223 2.8140 32 1 3.8120 4.4952 4.2255 33 1 5.5800 4.3941 4.4053 34 1 5.1964 2.9560 6.2553 35 1 3.5325 2.2975 6.1068 36 1 4.3276 0.0764 5.6245 37 1 5.5395 0.6310 6.8198 38 1 6.6255 -1.6953 7.5526 39 1 6.7055 2.4399 3.6871 40 1 5.7085 1.2481 2.8071 41 1 3.1594 -0.5875 1.3794 42 1 1.4952 -0.7082 2.0982 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046227135.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:26:07 Heat of formation + Delta-G solvation = -18.185391 kcal Electronic energy + Delta-G solvation = -21295.298180 eV Core-core repulsion = 18275.524584 eV Total energy + Delta-G solvation = -3019.773595 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.61225 -39.89732 -38.22753 -35.70785 -33.63836 -31.82745 -30.50417 -30.09933 -27.56524 -26.61055 -26.05372 -25.16858 -22.37365 -21.90578 -20.42970 -19.53307 -18.98324 -18.35622 -17.17882 -16.71875 -16.28878 -15.94620 -15.71094 -15.33613 -14.83434 -14.42381 -14.24048 -14.05547 -13.89141 -13.62324 -13.35402 -13.29501 -13.16857 -13.10162 -12.82189 -12.77246 -12.17039 -12.10708 -12.06538 -11.98102 -11.84473 -11.67810 -11.49063 -11.20716 -11.17329 -10.76242 -10.43120 -9.96956 -8.89942 -7.79922 -5.23829 1.43628 1.46580 1.53264 1.72361 2.28862 2.47339 3.28876 3.52098 3.60410 3.63688 3.70661 3.78496 3.82462 4.02405 4.17724 4.22440 4.54431 4.62318 4.65547 4.66763 4.73898 4.80692 4.82680 4.87179 4.92144 4.94786 5.00482 5.06821 5.08733 5.14082 5.26705 5.32246 5.37497 5.40519 5.58438 5.60886 5.72658 5.80196 6.29810 6.69838 7.09827 7.38711 7.75770 8.39577 9.21006 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.020276 B = 0.005452 C = 0.004795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.579990 B = 5134.643272 C = 5837.508484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.105 4.105 3 C -0.114 4.114 4 C -0.129 4.129 5 C 0.516 3.484 6 O -0.579 6.579 7 N -0.703 5.703 8 C 0.168 3.832 9 C -0.139 4.139 10 C -0.127 4.127 11 C 0.156 3.844 12 N -0.623 5.623 13 C -0.246 4.246 14 H 0.067 0.933 15 C -0.058 4.058 16 N -0.943 5.943 17 Si 0.978 3.022 18 H -0.286 1.286 19 H -0.283 1.283 20 H -0.278 1.278 21 C 0.137 3.863 22 C -0.123 4.123 23 H 0.068 0.932 24 H 0.064 0.936 25 H 0.065 0.935 26 H 0.076 0.924 27 H 0.087 0.913 28 H 0.064 0.936 29 H 0.143 0.857 30 H 0.409 0.591 31 H 0.054 0.946 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.082 0.918 35 H 0.101 0.899 36 H -0.007 1.007 37 H 0.076 0.924 38 H 0.249 0.751 39 H 0.017 0.983 40 H 0.006 0.994 41 H 0.053 0.947 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.111 5.982 -7.956 18.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.124 4.124 3 C -0.152 4.152 4 C -0.150 4.150 5 C 0.304 3.696 6 O -0.458 6.458 7 N -0.354 5.354 8 C 0.081 3.919 9 C -0.197 4.197 10 C -0.166 4.166 11 C 0.031 3.969 12 N -0.349 5.349 13 C -0.375 4.375 14 H 0.085 0.915 15 C -0.251 4.251 16 N -0.593 5.593 17 Si 0.806 3.194 18 H -0.212 1.212 19 H -0.209 1.209 20 H -0.204 1.204 21 C 0.011 3.989 22 C -0.161 4.161 23 H 0.087 0.913 24 H 0.083 0.917 25 H 0.085 0.915 26 H 0.094 0.906 27 H 0.106 0.894 28 H 0.083 0.917 29 H 0.161 0.839 30 H 0.246 0.754 31 H 0.073 0.927 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.100 0.900 35 H 0.120 0.880 36 H 0.011 0.989 37 H 0.094 0.906 38 H 0.059 0.941 39 H 0.035 0.965 40 H 0.024 0.976 41 H 0.071 0.929 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -14.389 6.172 -8.296 17.719 hybrid contribution 1.038 -1.086 0.284 1.529 sum -13.351 5.086 -8.011 16.380 Atomic orbital electron populations 1.21602 0.91616 1.02645 1.02862 1.22341 0.97290 0.96532 0.96239 1.22828 1.01255 0.98115 0.92953 1.22894 0.96731 0.97616 0.97729 1.21133 0.88692 0.77788 0.81978 1.90628 1.42961 1.47483 1.64765 1.45959 1.21912 1.60835 1.06696 1.21143 0.84359 0.93257 0.93177 1.21937 1.02873 0.92657 1.02239 1.23234 1.02550 0.98127 0.92658 1.21803 0.88718 0.91596 0.94773 1.44785 1.26937 1.39739 1.23437 1.19328 1.01351 1.11308 1.05500 0.91479 1.25534 1.01566 1.01174 0.96847 1.70000 1.37556 1.39442 1.12262 0.85168 0.79000 0.78459 0.76786 1.21156 1.20933 1.20399 1.21663 0.95201 0.90808 0.91271 1.22907 1.00830 0.93334 0.99046 0.91270 0.91711 0.91549 0.90582 0.89416 0.91680 0.83948 0.75441 0.92703 0.90217 0.91457 0.89973 0.88032 0.98927 0.90562 0.94102 0.96493 0.97551 0.92864 0.89140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.70 9.59 71.98 0.69 -1.01 16 2 C -0.11 -1.98 4.55 -10.20 -0.05 -2.02 16 3 C -0.11 -2.52 6.99 31.12 0.22 -2.30 16 4 C -0.13 -2.93 3.79 -11.02 -0.04 -2.98 16 5 C 0.52 16.51 6.58 87.66 0.58 17.09 16 6 O -0.58 -23.17 12.86 -3.04 -0.04 -23.20 16 7 N -0.70 -21.71 5.15 -417.56 -2.15 -23.86 16 8 C 0.17 5.98 0.81 4.79 0.00 5.98 16 9 C -0.14 -4.26 8.40 71.98 0.60 -3.65 16 10 C -0.13 -4.47 6.11 32.06 0.20 -4.28 16 11 C 0.16 7.55 5.89 86.93 0.51 8.06 16 12 N -0.62 -33.76 3.39 -691.55 -2.35 -36.11 16 13 C -0.25 -14.58 10.27 84.03 0.86 -13.72 16 14 H 0.07 3.95 7.83 -2.91 -0.02 3.93 16 15 C -0.06 -3.37 5.49 84.86 0.47 -2.91 16 16 N -0.94 -56.00 10.08 21.65 0.22 -55.78 16 17 Si 0.98 46.76 29.55 68.60 2.03 48.79 16 18 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 19 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 20 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 21 C 0.14 6.47 6.13 86.73 0.53 7.00 16 22 C -0.12 -2.85 7.20 31.18 0.22 -2.63 16 23 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 24 H 0.06 0.77 8.14 -2.39 -0.02 0.76 16 25 H 0.07 0.76 7.35 -2.39 -0.02 0.74 16 26 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.09 1.60 8.10 -2.39 -0.02 1.58 16 28 H 0.06 1.84 7.45 -2.39 -0.02 1.82 16 29 H 0.14 2.27 7.66 -2.39 -0.02 2.25 16 30 H 0.41 10.40 8.48 -92.71 -0.79 9.62 16 31 H 0.05 1.88 6.44 -2.39 -0.02 1.87 16 32 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.07 2.00 8.13 -2.39 -0.02 1.98 16 34 H 0.08 2.82 8.04 -2.39 -0.02 2.80 16 35 H 0.10 2.79 8.05 -2.39 -0.02 2.77 16 36 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 37 H 0.08 4.21 5.86 -2.39 -0.01 4.19 16 38 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 39 H 0.02 0.83 7.82 -2.39 -0.02 0.81 16 40 H 0.01 0.34 6.48 -2.39 -0.02 0.32 16 41 H 0.05 1.60 8.09 -2.39 -0.02 1.58 16 42 H 0.09 1.78 8.10 -2.39 -0.02 1.76 16 Total: -1.00 -71.62 327.04 2.72 -68.90 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: 0.21 Total: 18.62 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: 4.80 Total: 2.65 kcal Atomic # 7 Polarization: -111.47 SS G_CDS: -4.28 Total: -115.75 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: -0.04 Total: -23.20 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.79 kcal Total: -71.62 2.72 -68.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046227135.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.716 kcal (2) G-P(sol) polarization free energy of solvation -71.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds