Wall clock time and date at job start Mon Mar 30 2020 19:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 110.91901 * 2 1 4 4 C 1.54913 * 111.00250 * 123.89984 * 2 1 3 5 5 N 1.47418 * 104.83280 * 81.06168 * 4 2 1 6 6 C 1.36938 * 125.64747 * 204.09446 * 5 4 2 7 7 H 1.07992 * 120.00193 * 6.04364 * 6 5 4 8 8 C 1.38811 * 119.99714 * 186.05424 * 6 5 4 9 9 N 1.31614 * 120.00383 * 353.14485 * 8 6 5 10 10 Si 1.86801 * 119.99969 * 173.42987 * 8 6 5 11 11 H 1.48506 * 109.46816 * 274.72802 * 10 8 6 12 12 H 1.48499 * 109.47517 * 34.72866 * 10 8 6 13 13 H 1.48501 * 109.47394 * 154.73126 * 10 8 6 14 14 C 1.47023 * 108.70484 * 24.36108 * 5 4 2 15 15 C 1.54338 * 107.26193 * 358.57964 * 14 5 4 16 16 H 1.08996 * 110.85274 * 219.67146 * 15 14 5 17 17 N 1.46505 * 110.66500 * 96.52547 * 15 14 5 18 18 C 1.34771 * 119.99829 * 91.41049 * 17 15 14 19 19 O 1.21286 * 120.00666 * 0.02562 * 18 17 15 20 20 C 1.50706 * 120.00136 * 179.97438 * 18 17 15 21 21 C 1.53780 * 113.61417 * 279.14209 * 20 18 17 22 22 C 1.53961 * 87.01747 * 220.04411 * 21 20 18 23 23 C 1.53772 * 113.61602 * 181.53155 * 20 18 17 24 24 H 1.08993 * 109.47309 * 297.55982 * 1 2 3 25 25 H 1.09004 * 109.46643 * 57.55610 * 1 2 3 26 26 H 1.08994 * 109.47525 * 177.55272 * 1 2 3 27 27 H 1.09001 * 109.46978 * 182.44907 * 3 2 1 28 28 H 1.09001 * 109.46596 * 302.44101 * 3 2 1 29 29 H 1.09000 * 109.47357 * 62.44186 * 3 2 1 30 30 H 1.09007 * 110.36618 * 322.22449 * 4 2 1 31 31 H 1.08994 * 110.36732 * 199.90514 * 4 2 1 32 32 H 0.97006 * 120.00464 * 180.02562 * 9 8 6 33 33 H 1.08996 * 109.88468 * 118.12667 * 14 5 4 34 34 H 1.08998 * 109.87985 * 239.29380 * 14 5 4 35 35 H 0.96997 * 120.00006 * 271.40989 * 17 15 14 36 36 H 1.09002 * 112.84730 * 50.33178 * 20 18 17 37 37 H 1.08997 * 113.61201 * 334.55970 * 21 20 18 38 38 H 1.08994 * 113.61744 * 105.46700 * 21 20 18 39 39 H 1.08994 * 113.53613 * 270.81166 * 22 21 20 40 40 H 1.08993 * 113.73761 * 139.94210 * 22 21 20 41 41 H 1.09003 * 113.61705 * 254.52943 * 23 20 18 42 42 H 1.09000 * 113.62068 * 25.34726 * 23 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0763 1.4292 0.0000 4 6 2.0852 -0.8066 1.2004 5 7 2.0137 -2.2158 0.7735 6 6 1.9458 -3.2999 1.6075 7 1 1.8430 -3.1560 2.6728 8 6 2.0092 -4.5837 1.0834 9 7 1.9985 -4.7636 -0.2203 10 14 2.1016 -6.0565 2.2287 11 1 3.5166 -6.3008 2.6076 12 1 1.3020 -5.7848 3.4501 13 1 1.5600 -7.2548 1.5388 14 6 2.0340 -2.2650 -0.6958 15 6 2.0861 -0.8080 -1.2021 16 1 1.4525 -0.6793 -2.0795 17 7 3.4653 -0.4127 -1.4987 18 6 3.9625 -0.5815 -2.7399 19 8 3.2682 -1.0602 -3.6116 20 6 5.3811 -0.1744 -3.0452 21 6 5.5468 1.3318 -3.3076 22 6 6.5274 0.9465 -4.4303 23 6 5.7836 -0.3969 -4.5126 24 1 -0.3633 0.4754 0.9110 25 1 -0.3633 0.5514 -0.8673 26 1 -0.3634 -1.0266 -0.0439 27 1 3.1650 1.4019 -0.0439 28 1 1.6910 1.9653 -0.8673 29 1 1.7619 1.9384 0.9111 30 1 1.4671 -0.6460 2.0838 31 1 3.1181 -0.5233 1.4025 32 1 2.0425 -5.6608 -0.5866 33 1 2.9146 -2.8097 -1.0363 34 1 1.1300 -2.7510 -1.0628 35 1 4.0206 -0.0296 -0.8018 36 1 6.0995 -0.5746 -2.3299 37 1 4.6385 1.8147 -3.6680 38 1 6.0149 1.8697 -2.4833 39 1 7.5599 0.8540 -4.0936 40 1 6.4279 1.5564 -5.3281 41 1 6.4426 -1.2525 -4.6597 42 1 4.9400 -0.3889 -5.2029 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972733217.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:23:42 Heat of formation + Delta-G solvation = 1.457996 kcal Electronic energy + Delta-G solvation = -21440.737943 eV Core-core repulsion = 18421.816148 eV Total energy + Delta-G solvation = -3018.921794 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.11602 -38.60375 -36.81251 -33.81698 -32.90596 -30.68560 -28.41295 -27.08410 -26.03718 -25.61496 -25.57117 -23.28702 -20.93343 -19.94940 -19.33315 -18.57980 -17.11436 -16.64650 -15.78591 -15.46937 -14.70868 -14.51223 -13.98888 -13.83834 -13.73845 -13.28158 -12.80690 -12.48308 -12.41197 -12.21186 -11.99129 -11.83395 -11.67576 -11.37384 -11.13680 -11.05525 -10.95092 -10.75988 -10.55384 -10.42636 -10.33152 -10.20958 -9.97476 -9.85975 -9.61446 -9.24356 -8.58802 -8.35220 -6.79581 -5.68091 -3.01956 3.06980 3.41680 3.46385 3.48829 3.67262 4.52032 4.52928 4.62077 4.77720 4.81112 4.98803 5.29889 5.34209 5.37544 5.53361 5.56497 5.62020 5.68666 5.75607 5.78522 5.85012 5.93892 5.97075 6.06192 6.10202 6.18331 6.23995 6.27558 6.40843 6.43465 6.60987 6.63827 6.70385 6.81737 7.00660 7.57257 7.70207 7.86074 8.04083 8.28375 8.73428 9.24068 9.85141 10.51353 11.42893 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.019441 B = 0.005976 C = 0.005012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.887931 B = 4684.579299 C = 5585.140261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.090 4.090 3 C -0.130 4.130 4 C 0.144 3.856 5 N -0.602 5.602 6 C -0.231 4.231 7 H 0.077 0.923 8 C -0.005 4.005 9 N -0.917 5.917 10 Si 0.909 3.091 11 H -0.289 1.289 12 H -0.282 1.282 13 H -0.291 1.291 14 C 0.175 3.825 15 C 0.123 3.877 16 H 0.087 0.913 17 N -0.708 5.708 18 C 0.520 3.480 19 O -0.544 6.544 20 C -0.139 4.139 21 C -0.123 4.123 22 C -0.142 4.142 23 C -0.117 4.117 24 H 0.052 0.948 25 H 0.047 0.953 26 H 0.068 0.932 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.040 0.960 31 H 0.015 0.985 32 H 0.253 0.747 33 H 0.050 0.950 34 H 0.049 0.951 35 H 0.395 0.605 36 H 0.110 0.890 37 H 0.083 0.917 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.809 14.258 -3.900 15.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.092 4.092 3 C -0.187 4.187 4 C 0.018 3.982 5 N -0.329 5.329 6 C -0.360 4.360 7 H 0.095 0.905 8 C -0.202 4.202 9 N -0.564 5.564 10 Si 0.739 3.261 11 H -0.216 1.216 12 H -0.208 1.208 13 H -0.217 1.217 14 C 0.049 3.951 15 C 0.018 3.982 16 H 0.105 0.895 17 N -0.358 5.358 18 C 0.306 3.694 19 O -0.421 6.421 20 C -0.160 4.160 21 C -0.161 4.161 22 C -0.180 4.180 23 C -0.155 4.155 24 H 0.071 0.929 25 H 0.066 0.934 26 H 0.087 0.913 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.058 0.942 31 H 0.033 0.967 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.230 0.770 36 H 0.128 0.872 37 H 0.102 0.898 38 H 0.091 0.909 39 H 0.099 0.901 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.276 13.652 -4.545 15.326 hybrid contribution 0.383 -0.808 1.057 1.385 sum 5.659 12.844 -3.488 14.462 Atomic orbital electron populations 1.21587 0.93415 1.02771 1.00494 1.22014 0.96270 0.94165 0.96738 1.21665 1.00313 0.95568 1.01197 1.21617 0.96522 0.85813 0.94258 1.44431 1.86880 0.99756 1.01819 1.19003 1.43715 0.83861 0.89380 0.90513 1.24826 1.02122 0.97364 0.95912 1.69978 1.56243 1.20687 1.09448 0.86194 0.77680 0.82568 0.79651 1.21633 1.20774 1.21745 1.21526 1.01488 0.88724 0.83341 1.22446 0.81508 0.97313 0.96929 0.89481 1.46026 1.14814 1.63814 1.11195 1.20348 0.88774 0.77941 0.82327 1.90673 1.60653 1.44330 1.46485 1.22780 0.94993 0.98347 0.99880 1.22832 1.00098 0.94040 0.99107 1.22858 0.98463 0.97730 0.98903 1.22772 1.00401 0.97346 0.94979 0.92885 0.93441 0.91335 0.92992 0.92967 0.92759 0.94203 0.96743 0.93675 0.93188 0.93300 0.77042 0.87203 0.89805 0.90911 0.90103 0.91245 0.91184 0.88763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.02 8.61 37.16 0.32 -1.70 16 2 C -0.09 -1.51 0.83 -152.36 -0.13 -1.64 16 3 C -0.13 -1.69 8.35 37.16 0.31 -1.38 16 4 C 0.14 2.87 6.13 -2.53 -0.02 2.86 16 5 N -0.60 -15.15 3.38 -170.07 -0.57 -15.72 16 6 C -0.23 -6.44 10.27 -15.06 -0.15 -6.59 16 7 H 0.08 2.06 7.84 -52.49 -0.41 1.65 16 8 C -0.01 -0.16 5.48 -17.43 -0.10 -0.25 16 9 N -0.92 -27.64 10.36 55.49 0.57 -27.06 16 10 Si 0.91 22.35 29.56 -169.99 -5.02 17.32 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 14 C 0.17 4.35 4.75 -3.06 -0.01 4.34 16 15 C 0.12 2.39 2.59 -66.09 -0.17 2.22 16 16 H 0.09 1.78 7.45 -51.93 -0.39 1.39 16 17 N -0.71 -11.94 4.41 -52.02 -0.23 -12.17 16 18 C 0.52 9.02 7.35 -10.98 -0.08 8.94 16 19 O -0.54 -11.66 15.55 5.55 0.09 -11.57 16 20 C -0.14 -1.78 4.14 -90.96 -0.38 -2.16 16 21 C -0.12 -1.24 7.64 -25.82 -0.20 -1.44 16 22 C -0.14 -1.32 8.09 -25.82 -0.21 -1.53 16 23 C -0.12 -1.42 7.40 -25.92 -0.19 -1.62 16 24 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.07 1.31 7.83 -51.93 -0.41 0.90 16 27 H 0.05 0.63 6.26 -51.93 -0.33 0.30 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.04 0.78 8.05 -51.93 -0.42 0.37 16 31 H 0.02 0.29 8.04 -51.93 -0.42 -0.13 16 32 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 33 H 0.05 1.43 7.29 -51.93 -0.38 1.05 16 34 H 0.05 1.38 7.53 -51.93 -0.39 0.99 16 35 H 0.39 5.79 7.05 -40.82 -0.29 5.50 16 36 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.08 0.90 8.09 -51.93 -0.42 0.48 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.09 1.30 7.45 -51.93 -0.39 0.91 16 LS Contribution 330.67 15.07 4.98 4.98 Total: -1.00 -32.28 330.67 -8.36 -40.64 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -7.17 Total: 3.54 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: -1.00 Total: 0.04 kcal Atomic # 7 Polarization: -54.72 SS G_CDS: -0.23 Total: -54.95 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: 0.09 Total: -11.57 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.28 -8.36 -40.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972733217.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.098 kcal (2) G-P(sol) polarization free energy of solvation -32.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds