Wall clock time and date at job start Mon Mar 30 2020 19:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50693 * 109.47328 * 2 1 4 4 C 1.32998 * 119.99644 * 124.09940 * 3 2 1 5 5 C 1.50690 * 120.00194 * 6.24642 * 4 3 2 6 6 C 1.47108 * 119.99526 * 186.24741 * 4 3 2 7 7 O 1.21604 * 120.00310 * 359.97438 * 6 4 3 8 8 N 1.34778 * 119.99564 * 179.97438 * 6 4 3 9 9 C 1.46498 * 119.99914 * 179.72269 * 8 6 4 10 10 C 1.52995 * 109.47452 * 180.02562 * 9 8 6 11 11 H 1.09002 * 109.47166 * 295.00108 * 10 9 8 12 12 N 1.46510 * 109.47102 * 55.00072 * 10 9 8 13 13 C 1.36930 * 119.99919 * 205.00426 * 12 10 9 14 14 H 1.08003 * 120.00555 * 359.97438 * 13 12 10 15 15 C 1.38809 * 119.99984 * 179.97438 * 13 12 10 16 16 N 1.31617 * 120.00124 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 120.00095 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46934 * 90.00273 * 17 15 13 19 19 H 1.48500 * 109.47085 * 209.99983 * 17 15 13 20 20 H 1.48492 * 109.47165 * 329.99938 * 17 15 13 21 21 C 1.53004 * 109.47461 * 174.99967 * 10 9 8 22 22 C 1.52998 * 117.49684 * 248.74596 * 21 10 9 23 23 C 1.52995 * 117.49949 * 180.08773 * 21 10 9 24 24 H 1.08996 * 109.47467 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.46636 * 300.00210 * 1 2 3 26 26 H 1.09005 * 109.47050 * 59.99541 * 1 2 3 27 27 H 1.09008 * 109.46636 * 239.99790 * 2 1 3 28 28 H 1.09005 * 109.47050 * 120.00459 * 2 1 3 29 29 H 1.07997 * 120.00446 * 304.09520 * 3 2 1 30 30 H 1.09008 * 109.47090 * 268.04742 * 5 4 3 31 31 H 1.08997 * 109.47880 * 28.04425 * 5 4 3 32 32 H 1.09005 * 109.47653 * 148.05045 * 5 4 3 33 33 H 0.97000 * 120.00552 * 359.97438 * 8 6 4 34 34 H 1.09002 * 109.46964 * 299.99934 * 9 8 6 35 35 H 1.09002 * 109.47192 * 60.00122 * 9 8 6 36 36 H 0.96996 * 119.99651 * 24.99807 * 12 10 9 37 37 H 0.97001 * 120.00490 * 180.02562 * 16 15 13 38 38 H 1.08993 * 115.54510 * 34.41750 * 21 10 9 39 39 H 1.09001 * 117.50278 * 0.02562 * 22 21 10 40 40 H 1.09000 * 117.49466 * 145.01745 * 22 21 10 41 41 H 1.08998 * 117.49976 * 214.97672 * 23 21 10 42 42 H 1.09004 * 117.50201 * 359.97438 * 23 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.8629 1.8323 0.9538 5 6 3.4125 0.8459 1.9516 6 6 3.2448 3.2507 1.0346 7 8 2.8017 4.0466 0.2291 8 7 4.0860 3.6679 2.0015 9 6 4.4712 5.0792 2.0784 10 6 5.4264 5.2838 3.2559 11 1 4.9024 5.0767 4.1890 12 7 6.5667 4.3734 3.1237 13 6 7.2676 3.9881 4.2350 14 1 6.9802 4.3556 5.2091 15 6 8.3477 3.1252 4.1098 16 7 8.6983 2.6777 2.9228 17 14 9.3044 2.6001 5.6259 18 1 8.7012 1.3653 6.1888 19 1 10.7171 2.3351 5.2526 20 1 9.2554 3.6823 6.6415 21 6 5.9264 6.7299 3.2619 22 6 7.4013 6.9687 2.9326 23 6 6.9006 7.1359 4.3694 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8901 28 1 1.8934 -0.5139 0.8900 29 1 1.7181 2.1047 -0.7745 30 1 2.7630 0.8140 2.8265 31 1 3.4583 -0.1437 1.4970 32 1 4.4136 1.1538 2.2534 33 1 4.4393 3.0331 2.6443 34 1 4.9680 5.3711 1.1531 35 1 3.5809 5.6916 2.2217 36 1 6.8250 4.0436 2.2488 37 1 9.4528 2.0744 2.8352 38 1 5.2080 7.4769 2.9247 39 1 8.0154 6.0958 2.7113 40 1 7.6532 7.8732 2.3790 41 1 6.8235 8.1504 4.7606 42 1 7.1852 6.3730 5.0941 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265348564.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:24:15 Heat of formation + Delta-G solvation = 2.655080 kcal Electronic energy + Delta-G solvation = -20449.744614 eV Core-core repulsion = 17430.874729 eV Total energy + Delta-G solvation = -3018.869885 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.51936 -37.66456 -36.02427 -34.45905 -33.26493 -31.90228 -30.65259 -28.13682 -26.84785 -24.58317 -23.50417 -22.53382 -21.52166 -20.56568 -19.27415 -18.20387 -17.28880 -16.76148 -15.80021 -15.31372 -14.75913 -14.62951 -14.52274 -14.08962 -13.78674 -13.57568 -13.19935 -12.93703 -12.76118 -12.54445 -12.20711 -12.01155 -11.67512 -11.34550 -11.26121 -11.16430 -10.90520 -10.86465 -10.84382 -10.51950 -10.13358 -9.71401 -9.60705 -9.41448 -9.15568 -8.99544 -8.93906 -8.51922 -7.08243 -5.85059 -3.15283 1.55123 3.37107 3.43941 3.45081 3.60644 3.66246 4.48724 4.63421 4.79991 4.92268 5.10003 5.16759 5.25952 5.38134 5.45416 5.49674 5.58825 5.69381 5.73229 5.74693 5.78594 5.85049 5.92152 5.99205 6.02297 6.06680 6.08921 6.12902 6.38855 6.47672 6.56386 6.65955 6.66905 6.76612 6.94303 7.02447 7.27954 7.64175 8.02235 8.31940 8.64186 9.44344 9.98282 10.34801 11.36335 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.017572 B = 0.005121 C = 0.004173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.055426 B = 5466.139293 C = 6708.529549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.107 4.107 3 C -0.085 4.085 4 C -0.174 4.174 5 C -0.124 4.124 6 C 0.548 3.452 7 O -0.561 6.561 8 N -0.707 5.707 9 C 0.118 3.882 10 C 0.192 3.808 11 H 0.057 0.943 12 N -0.717 5.717 13 C -0.240 4.240 14 H 0.071 0.929 15 C -0.007 4.007 16 N -0.928 5.928 17 Si 0.902 3.098 18 H -0.290 1.290 19 H -0.292 1.292 20 H -0.282 1.282 21 C -0.177 4.177 22 C -0.163 4.163 23 C -0.175 4.175 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.123 0.877 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.411 0.589 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.386 0.614 37 H 0.256 0.744 38 H 0.086 0.914 39 H 0.118 0.882 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.904 -2.186 -2.190 12.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.144 4.144 3 C -0.105 4.105 4 C -0.177 4.177 5 C -0.181 4.181 6 C 0.336 3.664 7 O -0.442 6.442 8 N -0.358 5.358 9 C -0.006 4.006 10 C 0.081 3.919 11 H 0.075 0.925 12 N -0.359 5.359 13 C -0.371 4.371 14 H 0.089 0.911 15 C -0.204 4.204 16 N -0.576 5.576 17 Si 0.733 3.267 18 H -0.218 1.218 19 H -0.219 1.219 20 H -0.208 1.208 21 C -0.199 4.199 22 C -0.200 4.200 23 C -0.212 4.212 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.094 0.906 28 H 0.097 0.903 29 H 0.141 0.859 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.248 0.752 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.221 0.779 37 H 0.066 0.934 38 H 0.104 0.896 39 H 0.137 0.863 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -12.106 -1.656 -2.552 12.483 hybrid contribution 1.004 -0.501 0.822 1.390 sum -11.102 -2.157 -1.730 11.442 Atomic orbital electron populations 1.21682 0.94687 1.01675 1.02249 1.20845 0.96311 0.93970 1.03300 1.23467 0.93670 0.97090 0.96272 1.21518 1.01872 0.93899 1.00429 1.20907 1.01705 0.97794 0.97658 1.18383 0.78828 0.88276 0.80938 1.90729 1.55917 1.56000 1.41541 1.45942 1.46508 1.11151 1.32221 1.21579 0.97759 0.81298 0.99989 1.19997 0.88545 0.88317 0.95052 0.92541 1.42475 1.32465 1.53066 1.07901 1.19169 1.08324 1.22075 0.87545 0.91063 1.24702 0.99047 1.00280 0.96352 1.69657 1.29858 1.36958 1.21086 0.86274 0.79500 0.78480 0.82421 1.21787 1.21870 1.20774 1.23063 0.93032 0.99011 1.04817 1.22910 0.97046 1.02587 0.97447 1.22847 1.04772 1.00637 0.92975 0.92393 0.92509 0.92510 0.90554 0.90321 0.85871 0.91249 0.90955 0.90476 0.75155 0.91709 0.91888 0.77920 0.93449 0.89632 0.86344 0.91303 0.91041 0.87939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.89 37.16 0.37 -0.84 16 2 C -0.11 -1.02 6.03 -27.88 -0.17 -1.19 16 3 C -0.09 -1.09 9.08 -36.13 -0.33 -1.41 16 4 C -0.17 -2.52 5.99 -102.85 -0.62 -3.14 16 5 C -0.12 -1.55 8.73 36.00 0.31 -1.24 16 6 C 0.55 9.70 7.75 -12.66 -0.10 9.60 16 7 O -0.56 -11.50 16.23 5.27 0.09 -11.42 16 8 N -0.71 -12.24 5.34 -61.49 -0.33 -12.57 16 9 C 0.12 2.07 5.21 -4.05 -0.02 2.05 16 10 C 0.19 3.56 2.86 -67.93 -0.19 3.37 16 11 H 0.06 1.06 8.08 -51.93 -0.42 0.65 16 12 N -0.72 -15.95 3.07 -53.42 -0.16 -16.11 16 13 C -0.24 -5.95 8.16 -15.06 -0.12 -6.07 16 14 H 0.07 1.75 6.91 -52.48 -0.36 1.38 16 15 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 16 N -0.93 -26.08 13.06 55.49 0.72 -25.35 16 17 Si 0.90 21.17 29.55 -169.99 -5.02 16.14 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 C -0.18 -3.13 5.71 -90.62 -0.52 -3.64 16 22 C -0.16 -3.07 9.74 -26.70 -0.26 -3.33 16 23 C -0.18 -3.14 9.87 -26.70 -0.26 -3.41 16 24 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.08 0.66 8.14 -51.92 -0.42 0.24 16 28 H 0.08 0.71 5.61 -51.93 -0.29 0.42 16 29 H 0.12 1.68 7.51 -52.49 -0.39 1.29 16 30 H 0.07 0.78 8.14 -51.92 -0.42 0.35 16 31 H 0.07 0.78 6.27 -51.93 -0.33 0.46 16 32 H 0.08 1.10 6.80 -51.93 -0.35 0.75 16 33 H 0.41 7.10 6.28 -40.82 -0.26 6.84 16 34 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.39 9.49 7.80 -40.82 -0.32 9.17 16 37 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 38 H 0.09 1.35 8.11 -51.93 -0.42 0.93 16 39 H 0.12 2.67 6.68 -51.93 -0.35 2.32 16 40 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.10 2.05 6.22 -51.93 -0.32 1.73 16 LS Contribution 340.95 15.07 5.14 5.14 Total: -1.00 -28.36 340.95 -8.32 -36.68 By element: Atomic # 1 Polarization: 23.79 SS G_CDS: -6.75 Total: 17.03 kcal Atomic # 6 Polarization: -7.55 SS G_CDS: -2.00 Total: -9.55 kcal Atomic # 7 Polarization: -54.26 SS G_CDS: 0.23 Total: -54.03 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: 0.09 Total: -11.42 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -28.36 -8.32 -36.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265348564.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.337 kcal (2) G-P(sol) polarization free energy of solvation -28.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds