Wall clock time and date at job start Mon Mar 30 2020 19:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50693 * 109.47328 * 2 1 4 4 C 1.32998 * 119.99644 * 124.09940 * 3 2 1 5 5 C 1.50690 * 120.00194 * 6.24642 * 4 3 2 6 6 C 1.47108 * 119.99526 * 186.24741 * 4 3 2 7 7 O 1.21604 * 120.00310 * 359.97438 * 6 4 3 8 8 N 1.34778 * 119.99564 * 179.97438 * 6 4 3 9 9 C 1.46498 * 119.99914 * 179.72269 * 8 6 4 10 10 C 1.52995 * 109.47452 * 180.02562 * 9 8 6 11 11 H 1.09002 * 109.47166 * 295.00108 * 10 9 8 12 12 N 1.46510 * 109.47102 * 55.00072 * 10 9 8 13 13 C 1.36930 * 119.99919 * 205.00426 * 12 10 9 14 14 H 1.08003 * 120.00555 * 359.97438 * 13 12 10 15 15 C 1.38809 * 119.99984 * 179.97438 * 13 12 10 16 16 N 1.31617 * 120.00124 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 120.00095 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46934 * 90.00273 * 17 15 13 19 19 H 1.48500 * 109.47085 * 209.99983 * 17 15 13 20 20 H 1.48492 * 109.47165 * 329.99938 * 17 15 13 21 21 C 1.53004 * 109.47461 * 174.99967 * 10 9 8 22 22 C 1.52998 * 117.49684 * 248.74596 * 21 10 9 23 23 C 1.52995 * 117.49949 * 180.08773 * 21 10 9 24 24 H 1.08996 * 109.47467 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.46636 * 300.00210 * 1 2 3 26 26 H 1.09005 * 109.47050 * 59.99541 * 1 2 3 27 27 H 1.09008 * 109.46636 * 239.99790 * 2 1 3 28 28 H 1.09005 * 109.47050 * 120.00459 * 2 1 3 29 29 H 1.07997 * 120.00446 * 304.09520 * 3 2 1 30 30 H 1.09008 * 109.47090 * 268.04742 * 5 4 3 31 31 H 1.08997 * 109.47880 * 28.04425 * 5 4 3 32 32 H 1.09005 * 109.47653 * 148.05045 * 5 4 3 33 33 H 0.97000 * 120.00552 * 359.97438 * 8 6 4 34 34 H 1.09002 * 109.46964 * 299.99934 * 9 8 6 35 35 H 1.09002 * 109.47192 * 60.00122 * 9 8 6 36 36 H 0.96996 * 119.99651 * 24.99807 * 12 10 9 37 37 H 0.97001 * 120.00490 * 180.02562 * 16 15 13 38 38 H 1.08993 * 115.54510 * 34.41750 * 21 10 9 39 39 H 1.09001 * 117.50278 * 0.02562 * 22 21 10 40 40 H 1.09000 * 117.49466 * 145.01745 * 22 21 10 41 41 H 1.08998 * 117.49976 * 214.97672 * 23 21 10 42 42 H 1.09004 * 117.50201 * 359.97438 * 23 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.8629 1.8323 0.9538 5 6 3.4125 0.8459 1.9516 6 6 3.2448 3.2507 1.0346 7 8 2.8017 4.0466 0.2291 8 7 4.0860 3.6679 2.0015 9 6 4.4712 5.0792 2.0784 10 6 5.4264 5.2838 3.2559 11 1 4.9024 5.0767 4.1890 12 7 6.5667 4.3734 3.1237 13 6 7.2676 3.9881 4.2350 14 1 6.9802 4.3556 5.2091 15 6 8.3477 3.1252 4.1098 16 7 8.6983 2.6777 2.9228 17 14 9.3044 2.6001 5.6259 18 1 8.7012 1.3653 6.1888 19 1 10.7171 2.3351 5.2526 20 1 9.2554 3.6823 6.6415 21 6 5.9264 6.7299 3.2619 22 6 7.4013 6.9687 2.9326 23 6 6.9006 7.1359 4.3694 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8901 28 1 1.8934 -0.5139 0.8900 29 1 1.7181 2.1047 -0.7745 30 1 2.7630 0.8140 2.8265 31 1 3.4583 -0.1437 1.4970 32 1 4.4136 1.1538 2.2534 33 1 4.4393 3.0331 2.6443 34 1 4.9680 5.3711 1.1531 35 1 3.5809 5.6916 2.2217 36 1 6.8250 4.0436 2.2488 37 1 9.4528 2.0744 2.8352 38 1 5.2080 7.4769 2.9247 39 1 8.0154 6.0958 2.7113 40 1 7.6532 7.8732 2.3790 41 1 6.8235 8.1504 4.7606 42 1 7.1852 6.3730 5.0941 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265348564.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:24:14 Heat of formation + Delta-G solvation = -13.583350 kcal Electronic energy + Delta-G solvation = -20450.448765 eV Core-core repulsion = 17430.874729 eV Total energy + Delta-G solvation = -3019.574036 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.90320 -39.19515 -37.06137 -35.93684 -35.07282 -33.03367 -32.20168 -29.76064 -27.84840 -25.96620 -25.12642 -23.82931 -22.97978 -21.84149 -20.74011 -19.58795 -19.00650 -18.01388 -17.19711 -16.85256 -16.33832 -16.13875 -15.79344 -15.36471 -15.05578 -14.92579 -14.53662 -14.51572 -13.96341 -13.61959 -13.47595 -12.99217 -12.93530 -12.85365 -12.71450 -12.64830 -12.53759 -12.17980 -12.12438 -11.95016 -11.66091 -11.58373 -11.05354 -11.01591 -10.76864 -10.61516 -10.15560 -9.81264 -8.99167 -7.87340 -5.15385 0.40634 1.49920 1.52027 1.58281 2.28580 2.33160 2.59335 3.13418 3.47327 3.74277 3.87433 3.97427 3.98941 4.18777 4.27028 4.30585 4.32934 4.46789 4.48820 4.56898 4.61464 4.72146 4.79163 4.83971 4.92857 4.96666 5.07205 5.08178 5.16323 5.17888 5.24731 5.35825 5.42224 5.52800 5.58222 5.65820 5.67093 5.68487 6.32143 6.62383 7.24566 7.40696 8.10531 8.36826 9.35028 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.017572 B = 0.005121 C = 0.004173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.055426 B = 5466.139293 C = 6708.529549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.106 4.106 3 C -0.064 4.064 4 C -0.200 4.200 5 C -0.115 4.115 6 C 0.542 3.458 7 O -0.596 6.596 8 N -0.706 5.706 9 C 0.126 3.874 10 C 0.193 3.807 11 H 0.061 0.939 12 N -0.720 5.720 13 C -0.220 4.220 14 H 0.076 0.924 15 C -0.064 4.064 16 N -0.964 5.964 17 Si 0.957 3.043 18 H -0.289 1.289 19 H -0.305 1.305 20 H -0.273 1.273 21 C -0.170 4.170 22 C -0.173 4.173 23 C -0.168 4.168 24 H 0.076 0.924 25 H 0.050 0.950 26 H 0.056 0.944 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.111 0.889 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.054 0.946 33 H 0.411 0.589 34 H 0.049 0.951 35 H 0.078 0.922 36 H 0.373 0.627 37 H 0.247 0.753 38 H 0.114 0.886 39 H 0.077 0.923 40 H 0.090 0.910 41 H 0.102 0.898 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.447 -2.241 -1.478 13.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.142 4.142 3 C -0.084 4.084 4 C -0.203 4.203 5 C -0.172 4.172 6 C 0.332 3.668 7 O -0.480 6.480 8 N -0.357 5.357 9 C 0.001 3.999 10 C 0.084 3.916 11 H 0.078 0.922 12 N -0.360 5.360 13 C -0.352 4.352 14 H 0.094 0.906 15 C -0.257 4.257 16 N -0.615 5.615 17 Si 0.788 3.212 18 H -0.216 1.216 19 H -0.232 1.232 20 H -0.199 1.199 21 C -0.191 4.191 22 C -0.210 4.210 23 C -0.205 4.205 24 H 0.095 0.905 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.110 0.890 28 H 0.106 0.894 29 H 0.129 0.871 30 H 0.101 0.899 31 H 0.110 0.890 32 H 0.072 0.928 33 H 0.249 0.751 34 H 0.068 0.932 35 H 0.097 0.903 36 H 0.206 0.794 37 H 0.056 0.944 38 H 0.132 0.868 39 H 0.096 0.904 40 H 0.109 0.891 41 H 0.120 0.880 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.678 -1.688 -1.800 13.899 hybrid contribution 1.387 -0.428 0.547 1.551 sum -12.291 -2.115 -1.253 12.535 Atomic orbital electron populations 1.21683 0.93515 1.02902 1.02044 1.20941 0.97170 0.91632 1.04494 1.23742 0.91596 0.98641 0.94420 1.21492 1.03862 0.92498 1.02465 1.20857 1.00447 0.98029 0.97828 1.18949 0.78157 0.89557 0.80171 1.90698 1.57316 1.57249 1.42738 1.45950 1.46399 1.11050 1.32272 1.21480 0.97847 0.81874 0.98658 1.20116 0.87464 0.88402 0.95615 0.92157 1.42518 1.33194 1.53681 1.06599 1.19421 1.07362 1.20129 0.88256 0.90571 1.25297 1.00589 1.01539 0.98253 1.69801 1.30485 1.38389 1.22817 0.85383 0.77568 0.78220 0.80037 1.21627 1.23220 1.19858 1.23048 0.92932 0.98635 1.04464 1.22772 0.97399 1.01989 0.98887 1.22837 1.04141 1.01598 0.91919 0.90465 0.93050 0.92459 0.89011 0.89357 0.87083 0.89896 0.89008 0.92753 0.75129 0.93233 0.90341 0.79434 0.94389 0.86763 0.90418 0.89124 0.88001 0.90276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.89 71.98 0.71 -1.32 16 2 C -0.11 -1.75 6.03 29.85 0.18 -1.57 16 3 C -0.06 -1.56 9.08 24.52 0.22 -1.34 16 4 C -0.20 -5.69 5.99 -18.70 -0.11 -5.80 16 5 C -0.12 -2.76 8.73 71.23 0.62 -2.14 16 6 C 0.54 19.30 7.75 86.57 0.67 19.97 16 7 O -0.60 -24.74 16.23 -4.04 -0.07 -24.81 16 8 N -0.71 -24.58 5.34 -466.72 -2.49 -27.07 16 9 C 0.13 4.36 5.21 86.38 0.45 4.82 16 10 C 0.19 7.03 2.86 44.99 0.13 7.15 16 11 H 0.06 2.19 8.08 -2.39 -0.02 2.17 16 12 N -0.72 -32.31 3.07 -322.92 -0.99 -33.30 16 13 C -0.22 -10.92 8.16 84.03 0.69 -10.23 16 14 H 0.08 3.68 6.91 -2.91 -0.02 3.66 16 15 C -0.06 -3.41 5.50 84.86 0.47 -2.95 16 16 N -0.96 -55.63 13.06 21.65 0.28 -55.35 16 17 Si 0.96 43.96 29.55 68.60 2.03 45.98 16 18 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 19 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 20 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 21 C -0.17 -5.65 5.71 -10.79 -0.06 -5.71 16 22 C -0.17 -6.37 9.74 30.62 0.30 -6.07 16 23 C -0.17 -5.69 9.87 30.62 0.30 -5.38 16 24 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 26 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 27 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 28 H 0.09 1.33 5.61 -2.38 -0.01 1.32 16 29 H 0.11 2.98 7.51 -2.91 -0.02 2.96 16 30 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 31 H 0.09 1.80 6.27 -2.39 -0.01 1.79 16 32 H 0.05 1.55 6.80 -2.38 -0.02 1.53 16 33 H 0.41 14.34 6.28 -92.71 -0.58 13.75 16 34 H 0.05 1.87 8.14 -2.39 -0.02 1.86 16 35 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 36 H 0.37 18.85 7.80 -92.71 -0.72 18.13 16 37 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 38 H 0.11 3.23 8.11 -2.39 -0.02 3.21 16 39 H 0.08 3.56 6.68 -2.39 -0.02 3.54 16 40 H 0.09 2.91 8.14 -2.39 -0.02 2.89 16 41 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16 42 H 0.08 3.07 6.22 -2.38 -0.01 3.05 16 Total: -1.00 -61.77 340.95 3.04 -58.73 By element: Atomic # 1 Polarization: 46.66 SS G_CDS: -0.29 Total: 46.37 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: 4.57 Total: -10.56 kcal Atomic # 7 Polarization: -112.52 SS G_CDS: -3.20 Total: -115.72 kcal Atomic # 8 Polarization: -24.74 SS G_CDS: -0.07 Total: -24.81 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.98 kcal Total: -61.77 3.04 -58.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265348564.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.149 kcal (2) G-P(sol) polarization free energy of solvation -61.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds