Wall clock time and date at job start Mon Mar 30 2020 19:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.47167 * 2 1 4 4 C 1.53004 * 109.46692 * 119.99472 * 2 1 3 5 5 C 1.53002 * 109.46976 * 65.00463 * 4 2 1 6 6 C 1.50704 * 109.46722 * 179.97438 * 5 4 2 7 7 O 1.21276 * 120.00121 * 359.97438 * 6 5 4 8 8 N 1.34780 * 119.99554 * 179.97438 * 6 5 4 9 9 C 1.47865 * 126.94557 * 359.97245 * 8 6 5 10 10 C 1.56027 * 105.19053 * 181.97448 * 9 8 6 11 11 H 1.08998 * 116.24496 * 158.88489 * 10 9 8 12 12 C 1.57351 * 99.49166 * 32.80804 * 10 9 8 13 13 C 1.49288 * 126.94155 * 179.97438 * 8 6 5 14 14 H 1.08999 * 116.15211 * 16.67721 * 13 8 6 15 15 C 1.56023 * 104.09388 * 247.53736 * 13 8 6 16 16 N 1.49295 * 104.08833 * 288.81697 * 10 9 8 17 17 C 1.36939 * 126.94218 * 246.69708 * 16 10 9 18 18 H 1.08000 * 119.99491 * 359.97438 * 17 16 10 19 19 C 1.38809 * 119.99915 * 180.02562 * 17 16 10 20 20 N 1.31621 * 119.99993 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99820 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47245 * 59.99592 * 21 19 17 23 23 H 1.48505 * 109.46912 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47074 * 299.99155 * 21 19 17 25 25 H 1.08998 * 109.46572 * 60.00266 * 1 2 3 26 26 H 1.08994 * 109.47172 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47039 * 300.00348 * 1 2 3 28 28 H 1.08995 * 109.47111 * 239.99351 * 2 1 3 29 29 H 1.09000 * 109.46964 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.46544 * 299.99786 * 3 2 1 31 31 H 1.08994 * 109.47088 * 59.99138 * 3 2 1 32 32 H 1.09000 * 109.47435 * 304.99868 * 4 2 1 33 33 H 1.08999 * 109.46852 * 184.99929 * 4 2 1 34 34 H 1.08997 * 109.47034 * 59.99504 * 5 4 2 35 35 H 1.08999 * 109.46895 * 299.99441 * 5 4 2 36 36 H 1.09002 * 110.31619 * 300.93173 * 9 8 6 37 37 H 1.09004 * 110.31674 * 63.01724 * 9 8 6 38 38 H 1.08990 * 112.35285 * 191.71714 * 12 10 9 39 39 H 1.09005 * 112.44362 * 64.31026 * 12 10 9 40 40 H 1.08995 * 110.31456 * 47.67174 * 15 13 8 41 41 H 1.08991 * 110.31823 * 169.86439 * 15 13 8 42 42 H 0.96998 * 119.99585 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 1.6352 -2.1954 1.1881 6 6 2.1380 -2.9058 2.4184 7 8 2.7593 -2.2935 3.2609 8 7 1.8972 -4.2218 2.5824 9 6 1.1608 -5.1122 1.6597 10 6 1.1402 -6.5041 2.3644 11 1 0.3640 -7.1972 2.0398 12 6 1.0832 -6.0344 3.8651 13 6 2.3201 -5.0749 3.7322 14 1 2.6256 -4.5467 4.6354 15 6 3.3695 -6.0509 3.1154 16 7 2.5515 -6.9812 2.2681 17 6 3.0118 -8.0493 1.5452 18 1 2.3232 -8.6453 0.9647 19 6 4.3630 -8.3665 1.5594 20 7 5.2021 -7.6404 2.2673 21 14 4.9909 -9.8231 0.5727 22 1 4.6864 -9.6149 -0.8657 23 1 6.4595 -9.9479 0.7543 24 1 4.3262 -11.0643 1.0448 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 3.1301 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6054 -0.2616 2.1371 33 1 3.1263 -0.6443 1.2953 34 1 2.0699 -2.6549 0.3004 35 1 0.5489 -2.2723 1.1422 36 1 0.1443 -4.7474 1.5125 37 1 1.6802 -5.1797 0.7037 38 1 1.2654 -6.8519 4.5625 39 1 0.1640 -5.4968 4.0982 40 1 4.0906 -5.4993 2.5123 41 1 3.8792 -6.6056 3.9030 42 1 6.1464 -7.8619 2.2770 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481663257.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:24:24 Heat of formation + Delta-G solvation = -0.441416 kcal Electronic energy + Delta-G solvation = -20987.570207 eV Core-core repulsion = 17968.566048 eV Total energy + Delta-G solvation = -3019.004159 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.99114 -38.08221 -36.37252 -33.53489 -31.73143 -30.59208 -28.93763 -28.45330 -27.26886 -25.20611 -24.59046 -23.10079 -20.50895 -19.83770 -19.80127 -18.33467 -17.13913 -16.24397 -15.79333 -15.54753 -14.80849 -14.62681 -14.05457 -13.91543 -13.57501 -13.37238 -12.92189 -12.53978 -12.32179 -12.13176 -11.85262 -11.79902 -11.60231 -11.34052 -11.24906 -11.06254 -10.86476 -10.82506 -10.72574 -10.66679 -10.54927 -10.51837 -10.27167 -10.08672 -9.60332 -9.33483 -8.71496 -7.96005 -6.93530 -5.76526 -3.10926 3.13056 3.37341 3.41584 3.43722 3.46742 4.41523 4.69485 4.81839 4.84868 4.97917 5.18599 5.20360 5.31304 5.37362 5.45253 5.52675 5.57052 5.62619 5.65316 5.68963 5.75571 5.78992 5.83343 5.93080 6.00873 6.02779 6.13342 6.21133 6.30565 6.33701 6.41330 6.43579 6.52516 6.60164 6.72219 7.41562 7.48157 7.70275 8.05658 8.17232 8.67309 9.07090 9.70607 10.39804 11.35891 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.024486 B = 0.004622 C = 0.004370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.243513 B = 6056.613289 C = 6405.358555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.099 4.099 3 C -0.146 4.146 4 C -0.097 4.097 5 C -0.136 4.136 6 C 0.525 3.475 7 O -0.559 6.559 8 N -0.608 5.608 9 C 0.084 3.916 10 C 0.142 3.858 11 H 0.106 0.894 12 C -0.151 4.151 13 C 0.096 3.904 14 H 0.111 0.889 15 C 0.177 3.823 16 N -0.600 5.600 17 C -0.232 4.232 18 H 0.080 0.920 19 C -0.006 4.006 20 N -0.920 5.920 21 Si 0.912 3.088 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.285 1.285 25 H 0.051 0.949 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.070 0.930 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.052 0.948 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.064 0.936 40 H 0.049 0.951 41 H 0.057 0.943 42 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.512 11.076 -2.854 15.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.118 4.118 3 C -0.203 4.203 4 C -0.135 4.135 5 C -0.175 4.175 6 C 0.314 3.686 7 O -0.439 6.439 8 N -0.342 5.342 9 C -0.041 4.041 10 C 0.033 3.967 11 H 0.124 0.876 12 C -0.191 4.191 13 C -0.007 4.007 14 H 0.128 0.872 15 C 0.052 3.948 16 N -0.325 5.325 17 C -0.360 4.360 18 H 0.097 0.903 19 C -0.202 4.202 20 N -0.567 5.567 21 Si 0.743 3.257 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.211 1.211 25 H 0.070 0.930 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.088 0.912 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.070 0.930 37 H 0.088 0.912 38 H 0.101 0.899 39 H 0.083 0.917 40 H 0.067 0.933 41 H 0.075 0.925 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.899 11.348 -2.491 15.264 hybrid contribution 0.458 -0.810 -0.667 1.144 sum -9.442 10.538 -3.158 14.498 Atomic orbital electron populations 1.21905 0.95439 1.01825 1.01484 1.21158 0.95790 0.96262 0.98557 1.21820 1.01101 0.95958 1.01464 1.21388 1.01773 0.92863 0.97497 1.21682 1.02329 0.96519 0.97007 1.20268 0.79759 0.80571 0.87985 1.90645 1.42198 1.65585 1.45434 1.49265 1.54662 1.07276 1.22992 1.23278 0.94231 0.92541 0.94080 1.23177 0.89673 0.91419 0.92410 0.87603 1.24192 0.96814 0.98984 0.99083 1.24329 0.97012 0.89733 0.89619 0.87158 1.22282 0.90084 0.88631 0.93773 1.45759 1.00105 1.31619 1.55012 1.19018 0.91966 1.03423 1.21612 0.90254 1.24805 0.95980 0.99274 1.00188 1.69898 1.02786 1.40200 1.43799 0.86200 0.77814 0.82099 0.79612 1.21196 1.21623 1.21119 0.92974 0.92446 0.92739 0.91194 0.92636 0.92933 0.92720 0.91403 0.91261 0.89295 0.89375 0.92972 0.91185 0.89879 0.91728 0.93330 0.92466 0.93537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 8.95 37.16 0.33 -1.01 16 2 C -0.10 -1.01 2.92 -90.61 -0.26 -1.27 16 3 C -0.15 -1.35 9.19 37.16 0.34 -1.01 16 4 C -0.10 -1.25 3.97 -26.73 -0.11 -1.35 16 5 C -0.14 -1.87 4.74 -27.88 -0.13 -2.00 16 6 C 0.53 9.66 7.90 -10.98 -0.09 9.57 16 7 O -0.56 -12.07 16.33 5.56 0.09 -11.98 16 8 N -0.61 -11.33 2.94 -156.76 -0.46 -11.79 16 9 C 0.08 1.43 6.00 -1.67 -0.01 1.42 16 10 C 0.14 2.63 5.54 -62.39 -0.35 2.28 16 11 H 0.11 1.74 8.14 -51.93 -0.42 1.31 16 12 C -0.15 -2.58 6.83 -22.13 -0.15 -2.73 16 13 C 0.10 1.89 5.18 -62.53 -0.32 1.56 16 14 H 0.11 2.14 8.06 -51.93 -0.42 1.72 16 15 C 0.18 4.28 4.87 -0.42 0.00 4.28 16 16 N -0.60 -14.45 3.06 -154.36 -0.47 -14.92 16 17 C -0.23 -6.17 10.38 -15.06 -0.16 -6.33 16 18 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 19 C -0.01 -0.16 5.49 -17.43 -0.10 -0.25 16 20 N -0.92 -26.87 10.57 55.49 0.59 -26.29 16 21 Si 0.91 21.67 29.55 -169.99 -5.02 16.64 16 22 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 25 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.51 6.56 -51.93 -0.34 0.17 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 33 H 0.07 0.99 8.10 -51.93 -0.42 0.57 16 34 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.09 1.04 6.56 -51.93 -0.34 0.70 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 39 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.05 1.35 7.73 -51.93 -0.40 0.95 16 41 H 0.06 1.52 7.47 -51.93 -0.39 1.13 16 42 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 332.17 15.07 5.01 5.01 Total: -1.00 -31.11 332.17 -8.62 -39.73 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -7.35 Total: 0.44 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: -1.00 Total: 3.16 kcal Atomic # 7 Polarization: -52.66 SS G_CDS: -0.35 Total: -53.00 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: 0.09 Total: -11.98 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.11 -8.62 -39.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481663257.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.293 kcal (2) G-P(sol) polarization free energy of solvation -31.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds