Wall clock time and date at job start Mon Mar 30 2020 19:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.47167 * 2 1 4 4 C 1.53004 * 109.46692 * 119.99472 * 2 1 3 5 5 C 1.53002 * 109.46976 * 65.00463 * 4 2 1 6 6 C 1.50704 * 109.46722 * 179.97438 * 5 4 2 7 7 O 1.21276 * 120.00121 * 359.97438 * 6 5 4 8 8 N 1.34780 * 119.99554 * 179.97438 * 6 5 4 9 9 C 1.47865 * 126.94557 * 359.97245 * 8 6 5 10 10 C 1.56027 * 105.19053 * 181.97448 * 9 8 6 11 11 H 1.08998 * 116.24496 * 158.88489 * 10 9 8 12 12 C 1.57351 * 99.49166 * 32.80804 * 10 9 8 13 13 C 1.49288 * 126.94155 * 179.97438 * 8 6 5 14 14 H 1.08999 * 116.15211 * 16.67721 * 13 8 6 15 15 C 1.56023 * 104.09388 * 247.53736 * 13 8 6 16 16 N 1.49295 * 104.08833 * 288.81697 * 10 9 8 17 17 C 1.36939 * 126.94218 * 246.69708 * 16 10 9 18 18 H 1.08000 * 119.99491 * 359.97438 * 17 16 10 19 19 C 1.38809 * 119.99915 * 180.02562 * 17 16 10 20 20 N 1.31621 * 119.99993 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99820 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47245 * 59.99592 * 21 19 17 23 23 H 1.48505 * 109.46912 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47074 * 299.99155 * 21 19 17 25 25 H 1.08998 * 109.46572 * 60.00266 * 1 2 3 26 26 H 1.08994 * 109.47172 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47039 * 300.00348 * 1 2 3 28 28 H 1.08995 * 109.47111 * 239.99351 * 2 1 3 29 29 H 1.09000 * 109.46964 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.46544 * 299.99786 * 3 2 1 31 31 H 1.08994 * 109.47088 * 59.99138 * 3 2 1 32 32 H 1.09000 * 109.47435 * 304.99868 * 4 2 1 33 33 H 1.08999 * 109.46852 * 184.99929 * 4 2 1 34 34 H 1.08997 * 109.47034 * 59.99504 * 5 4 2 35 35 H 1.08999 * 109.46895 * 299.99441 * 5 4 2 36 36 H 1.09002 * 110.31619 * 300.93173 * 9 8 6 37 37 H 1.09004 * 110.31674 * 63.01724 * 9 8 6 38 38 H 1.08990 * 112.35285 * 191.71714 * 12 10 9 39 39 H 1.09005 * 112.44362 * 64.31026 * 12 10 9 40 40 H 1.08995 * 110.31456 * 47.67174 * 15 13 8 41 41 H 1.08991 * 110.31823 * 169.86439 * 15 13 8 42 42 H 0.96998 * 119.99585 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 1.6352 -2.1954 1.1881 6 6 2.1380 -2.9058 2.4184 7 8 2.7593 -2.2935 3.2609 8 7 1.8972 -4.2218 2.5824 9 6 1.1608 -5.1122 1.6597 10 6 1.1402 -6.5041 2.3644 11 1 0.3640 -7.1972 2.0398 12 6 1.0832 -6.0344 3.8651 13 6 2.3201 -5.0749 3.7322 14 1 2.6256 -4.5467 4.6354 15 6 3.3695 -6.0509 3.1154 16 7 2.5515 -6.9812 2.2681 17 6 3.0118 -8.0493 1.5452 18 1 2.3232 -8.6453 0.9647 19 6 4.3630 -8.3665 1.5594 20 7 5.2021 -7.6404 2.2673 21 14 4.9909 -9.8231 0.5727 22 1 4.6864 -9.6149 -0.8657 23 1 6.4595 -9.9479 0.7543 24 1 4.3262 -11.0643 1.0448 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 3.1301 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6054 -0.2616 2.1371 33 1 3.1263 -0.6443 1.2953 34 1 2.0699 -2.6549 0.3004 35 1 0.5489 -2.2723 1.1422 36 1 0.1443 -4.7474 1.5125 37 1 1.6802 -5.1797 0.7037 38 1 1.2654 -6.8519 4.5625 39 1 0.1640 -5.4968 4.0982 40 1 4.0906 -5.4993 2.5123 41 1 3.8792 -6.6056 3.9030 42 1 6.1464 -7.8619 2.2770 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481663257.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:24:23 Heat of formation + Delta-G solvation = -18.630259 kcal Electronic energy + Delta-G solvation = -20988.358934 eV Core-core repulsion = 17968.566048 eV Total energy + Delta-G solvation = -3019.792886 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.51496 -39.53840 -37.36968 -35.38771 -33.39075 -31.87031 -30.50706 -30.16073 -27.96646 -26.94404 -25.92037 -24.65815 -21.97961 -21.40350 -20.76776 -19.93110 -18.79532 -17.85013 -17.34803 -16.85363 -16.34979 -15.90180 -15.66109 -15.09679 -14.92905 -14.63761 -14.15604 -13.77083 -13.75975 -13.44020 -13.28668 -13.06896 -12.99947 -12.83334 -12.67132 -12.63245 -12.32034 -12.23968 -12.14827 -12.06642 -11.88513 -11.65455 -11.50897 -11.48696 -11.43041 -10.90261 -10.66124 -9.51388 -8.91166 -7.83837 -5.19417 1.47069 1.49977 1.56091 1.68375 2.05614 2.49183 3.31621 3.36062 3.58821 3.81435 3.89558 3.92111 3.98479 4.04671 4.19148 4.22965 4.34414 4.53592 4.59406 4.62522 4.73188 4.82112 4.85115 4.89704 4.93030 4.97897 5.02454 5.08504 5.14588 5.16148 5.20469 5.26321 5.33778 5.45361 5.50853 5.53619 5.55157 5.64188 6.07145 6.72027 6.99782 7.21577 7.70064 8.42057 9.27683 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.024486 B = 0.004622 C = 0.004370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.243513 B = 6056.613289 C = 6405.358555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.095 4.095 3 C -0.147 4.147 4 C -0.093 4.093 5 C -0.124 4.124 6 C 0.515 3.485 7 O -0.599 6.599 8 N -0.613 5.613 9 C 0.091 3.909 10 C 0.136 3.864 11 H 0.138 0.862 12 C -0.128 4.128 13 C 0.096 3.904 14 H 0.108 0.892 15 C 0.189 3.811 16 N -0.620 5.620 17 C -0.230 4.230 18 H 0.096 0.904 19 C -0.072 4.072 20 N -0.959 5.959 21 Si 0.977 3.023 22 H -0.276 1.276 23 H -0.304 1.304 24 H -0.273 1.273 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.054 0.946 28 H 0.073 0.927 29 H 0.047 0.953 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.044 0.956 34 H 0.095 0.905 35 H 0.120 0.880 36 H 0.104 0.896 37 H 0.053 0.947 38 H 0.078 0.922 39 H 0.103 0.897 40 H -0.003 1.003 41 H 0.019 0.981 42 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.942 11.262 -4.282 18.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.113 4.113 3 C -0.204 4.204 4 C -0.131 4.131 5 C -0.163 4.163 6 C 0.306 3.694 7 O -0.482 6.482 8 N -0.345 5.345 9 C -0.033 4.033 10 C 0.029 3.971 11 H 0.155 0.845 12 C -0.167 4.167 13 C -0.007 4.007 14 H 0.126 0.874 15 C 0.063 3.937 16 N -0.345 5.345 17 C -0.359 4.359 18 H 0.114 0.886 19 C -0.265 4.265 20 N -0.609 5.609 21 Si 0.806 3.194 22 H -0.202 1.202 23 H -0.231 1.231 24 H -0.199 1.199 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.091 0.909 29 H 0.066 0.934 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.113 0.887 35 H 0.138 0.862 36 H 0.122 0.878 37 H 0.071 0.929 38 H 0.097 0.903 39 H 0.122 0.878 40 H 0.016 0.984 41 H 0.037 0.963 42 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -13.405 11.532 -3.945 18.117 hybrid contribution 1.503 -0.839 -0.203 1.733 sum -11.902 10.692 -4.148 16.529 Atomic orbital electron populations 1.21896 0.94011 1.02382 1.02186 1.21129 0.96915 0.96312 0.96962 1.21828 1.00706 0.95629 1.02243 1.21354 1.00281 0.92752 0.98754 1.21711 1.04038 0.96176 0.94420 1.21173 0.78947 0.80420 0.88828 1.90624 1.43905 1.66458 1.47170 1.49391 1.54686 1.07582 1.22884 1.23220 0.96335 0.91313 0.92403 1.23629 0.87233 0.92558 0.93651 0.84476 1.24091 0.96632 0.98053 0.97959 1.24139 0.96992 0.89762 0.89830 0.87431 1.21860 0.90710 0.88932 0.92170 1.46024 1.02807 1.31102 1.54597 1.19537 0.92218 1.03566 1.20605 0.88609 1.25656 0.96632 1.02191 1.01980 1.70153 1.02307 1.42243 1.46173 0.85160 0.76275 0.79400 0.78548 1.20209 1.23069 1.19928 0.91646 0.91926 0.92734 0.90870 0.93379 0.91368 0.92721 0.92219 0.93713 0.88713 0.86208 0.87791 0.92887 0.90339 0.87841 0.98434 0.96304 0.94785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 8.95 71.98 0.64 -1.53 16 2 C -0.09 -1.72 2.92 -10.79 -0.03 -1.75 16 3 C -0.15 -2.47 9.19 71.98 0.66 -1.81 16 4 C -0.09 -2.30 3.97 30.60 0.12 -2.18 16 5 C -0.12 -3.16 4.74 29.85 0.14 -3.02 16 6 C 0.52 18.57 7.90 87.66 0.69 19.26 16 7 O -0.60 -26.32 16.33 -3.02 -0.05 -26.37 16 8 N -0.61 -21.99 2.94 -768.25 -2.26 -24.25 16 9 C 0.09 2.79 6.00 87.17 0.52 3.32 16 10 C 0.14 4.60 5.54 47.03 0.26 4.86 16 11 H 0.14 3.83 8.14 -2.39 -0.02 3.81 16 12 C -0.13 -4.01 6.83 33.57 0.23 -3.78 16 13 C 0.10 3.79 5.18 46.94 0.24 4.03 16 14 H 0.11 4.26 8.06 -2.39 -0.02 4.24 16 15 C 0.19 9.56 4.87 86.73 0.42 9.98 16 16 N -0.62 -29.78 3.06 -642.27 -1.97 -31.75 16 17 C -0.23 -12.20 10.38 84.03 0.87 -11.32 16 18 H 0.10 4.64 7.83 -2.91 -0.02 4.62 16 19 C -0.07 -4.06 5.49 84.86 0.47 -3.59 16 20 N -0.96 -58.91 10.57 21.65 0.23 -58.68 16 21 Si 0.98 45.22 29.55 68.60 2.03 47.25 16 22 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 23 H -0.30 -14.58 7.11 99.48 0.71 -13.88 16 24 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 25 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.06 0.85 6.56 -2.39 -0.02 0.84 16 27 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.06 1.56 8.10 -2.39 -0.02 1.54 16 33 H 0.04 1.30 8.10 -2.39 -0.02 1.28 16 34 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.12 2.31 6.56 -2.39 -0.02 2.30 16 36 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 39 H 0.10 2.53 8.14 -2.38 -0.02 2.51 16 40 H 0.00 -0.16 7.73 -2.39 -0.02 -0.17 16 41 H 0.02 1.07 7.47 -2.39 -0.02 1.05 16 42 H 0.24 14.77 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -71.81 332.17 4.20 -67.61 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: 0.97 Total: 13.74 kcal Atomic # 6 Polarization: 7.21 SS G_CDS: 5.25 Total: 12.45 kcal Atomic # 7 Polarization: -110.69 SS G_CDS: -4.00 Total: -114.69 kcal Atomic # 8 Polarization: -26.32 SS G_CDS: -0.05 Total: -26.37 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -71.81 4.20 -67.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481663257.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.983 kcal (2) G-P(sol) polarization free energy of solvation -71.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds