Wall clock time and date at job start Mon Mar 30 2020 19:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47213 * 332.44603 * 3 2 1 5 5 N 1.46892 * 109.47107 * 179.97438 * 4 3 2 6 6 C 1.46956 * 111.00247 * 293.80185 * 5 4 3 7 7 C 1.53051 * 109.36299 * 176.81173 * 6 5 4 8 8 N 1.46953 * 109.36629 * 58.40511 * 7 6 5 9 9 C 1.46903 * 110.99991 * 176.81373 * 8 7 6 10 10 C 1.53001 * 109.46745 * 199.50338 * 9 8 7 11 11 O 1.42901 * 109.47383 * 64.64355 * 10 9 8 12 12 C 1.42904 * 114.00122 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.46959 * 180.02562 * 12 11 10 14 14 H 1.08000 * 119.99928 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99921 * 180.02562 * 13 12 11 16 16 N 1.31512 * 119.99647 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00072 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.46932 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47245 * 119.99467 * 17 15 13 20 20 H 1.48503 * 109.46834 * 239.99692 * 17 15 13 21 21 C 1.46956 * 110.87708 * 300.67665 * 8 7 6 22 22 C 1.46960 * 110.99904 * 170.00225 * 5 4 3 23 23 H 4.44655 * 5.63305 * 179.97438 * 4 1 2 24 24 H 1.09001 * 109.47097 * 92.44748 * 3 2 1 25 25 H 1.09007 * 109.46917 * 212.45241 * 3 2 1 26 26 H 1.09004 * 109.47385 * 300.00825 * 4 3 2 27 27 H 1.09004 * 109.47070 * 60.00203 * 4 3 2 28 28 H 1.09001 * 109.48855 * 296.77901 * 6 5 4 29 29 H 1.09004 * 109.48773 * 56.84487 * 6 5 4 30 30 H 1.09004 * 109.49140 * 298.42924 * 7 6 5 31 31 H 1.08998 * 109.48690 * 178.36933 * 7 6 5 32 32 H 1.09001 * 109.46885 * 319.49585 * 9 8 7 33 33 H 1.08994 * 109.47775 * 79.50170 * 9 8 7 34 34 H 1.09007 * 109.46829 * 184.63937 * 10 9 8 35 35 H 1.08993 * 109.47255 * 304.63993 * 10 9 8 36 36 H 1.09002 * 109.46769 * 300.00062 * 12 11 10 37 37 H 1.08998 * 109.47020 * 60.00037 * 12 11 10 38 38 H 0.96999 * 119.99654 * 180.02562 * 16 15 13 39 39 H 1.09003 * 109.49290 * 299.35134 * 21 8 7 40 40 H 1.09004 * 109.48773 * 179.28825 * 21 8 7 41 41 H 1.08998 * 109.48914 * 303.15745 * 22 5 4 42 42 H 1.08995 * 109.48796 * 63.22603 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.2780 0.6673 5 7 4.6256 -1.2776 0.6667 6 6 5.1518 -1.3674 -0.7025 7 6 6.6796 -1.2841 -0.6654 8 7 7.2068 -2.3715 0.1706 9 6 8.6758 -2.3710 0.1702 10 6 9.1863 -3.7424 0.6170 11 8 8.8011 -4.7297 -0.3416 12 6 9.2314 -6.0534 -0.0177 13 6 8.7734 -7.0071 -1.0910 14 1 8.2099 -6.6392 -1.9356 15 6 9.0731 -8.3494 -0.9940 16 7 9.7590 -8.7973 0.0348 17 14 8.5049 -9.5317 -2.3239 18 1 7.7565 -8.7828 -3.3652 19 1 9.6856 -10.1894 -2.9390 20 1 7.6202 -10.5629 -1.7244 21 6 6.6806 -2.2817 1.5398 22 6 5.1528 -2.3651 1.5029 23 1 -1.0498 -0.0002 0.0003 24 1 3.0094 0.0447 -1.0267 25 1 3.0090 0.8681 0.5515 26 1 2.7932 -1.3221 1.6940 27 1 2.7937 -2.1454 0.1159 28 1 4.8500 -2.3160 -1.1465 29 1 4.7570 -0.5446 -1.2985 30 1 6.9814 -0.3241 -0.2465 31 1 7.0736 -1.3796 -1.6772 32 1 9.0387 -2.1583 -0.8354 33 1 9.0392 -1.6067 0.8569 34 1 10.2732 -3.7174 0.6961 35 1 8.7571 -3.9913 1.5875 36 1 10.3192 -6.0759 0.0479 37 1 8.8034 -6.3505 0.9396 38 1 9.9701 -9.7416 0.1029 39 1 6.9824 -1.3331 1.9840 40 1 7.0754 -3.1045 2.1358 41 1 4.7588 -2.2695 2.5147 42 1 4.8511 -3.3249 1.0838 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815077458.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:24:16 Heat of formation + Delta-G solvation = 15.515528 kcal Electronic energy + Delta-G solvation = -19980.807808 eV Core-core repulsion = 16962.495594 eV Total energy + Delta-G solvation = -3018.312214 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.41780 -37.03019 -35.81351 -33.98411 -32.64395 -30.98497 -30.71689 -28.81279 -26.91796 -25.50426 -23.55182 -22.56018 -22.22959 -21.09213 -19.71738 -18.32733 -16.51318 -16.32577 -15.67758 -15.50536 -15.20009 -14.82810 -14.63367 -14.58712 -14.19472 -13.87815 -13.84559 -13.12753 -12.95519 -12.74143 -12.28841 -11.98014 -11.73506 -11.58519 -11.29037 -11.19467 -11.09736 -10.85281 -10.74187 -10.59173 -10.43797 -10.33217 -10.17927 -9.92015 -9.01638 -8.74653 -8.48529 -8.09086 -8.01236 -6.06253 -4.06822 2.54478 2.61167 3.31880 3.38144 3.45223 3.69356 4.02910 4.29351 4.39577 4.75745 4.86931 4.89962 4.97603 5.17056 5.25985 5.30320 5.32179 5.38177 5.44160 5.48248 5.65547 5.67766 5.69575 5.74362 5.76452 5.87447 5.92775 5.94312 6.07697 6.11751 6.18852 6.33557 6.87330 6.90354 7.16888 7.29465 7.30602 7.38228 7.50261 7.86116 8.22949 8.68963 9.08761 9.57939 11.05561 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.020260 B = 0.003554 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.688311 B = 7877.539732 C = 8747.583935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.182 4.182 3 C -0.011 4.011 4 C 0.061 3.939 5 N -0.541 5.541 6 C 0.052 3.948 7 C 0.060 3.940 8 N -0.526 5.526 9 C 0.062 3.938 10 C 0.069 3.931 11 O -0.380 6.380 12 C 0.194 3.806 13 C -0.508 4.508 14 H 0.066 0.934 15 C 0.054 3.946 16 N -0.900 5.900 17 Si 0.906 3.094 18 H -0.270 1.270 19 H -0.283 1.283 20 H -0.283 1.283 21 C 0.058 3.942 22 C 0.058 3.942 23 H 0.216 0.784 24 H 0.087 0.913 25 H 0.094 0.906 26 H 0.077 0.923 27 H 0.040 0.960 28 H 0.048 0.952 29 H 0.078 0.922 30 H 0.036 0.964 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.041 0.959 34 H 0.038 0.962 35 H 0.034 0.966 36 H 0.002 0.998 37 H 0.002 0.998 38 H 0.262 0.738 39 H 0.037 0.963 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.432 18.517 2.532 21.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.183 4.183 3 C -0.048 4.048 4 C -0.067 4.067 5 N -0.266 5.266 6 C -0.076 4.076 7 C -0.068 4.068 8 N -0.251 5.251 9 C -0.066 4.066 10 C -0.009 4.009 11 O -0.300 6.300 12 C 0.120 3.880 13 C -0.547 4.547 14 H 0.085 0.915 15 C -0.147 4.147 16 N -0.540 5.540 17 Si 0.734 3.266 18 H -0.195 1.195 19 H -0.209 1.209 20 H -0.209 1.209 21 C -0.070 4.070 22 C -0.070 4.070 23 H 0.233 0.767 24 H 0.105 0.895 25 H 0.112 0.888 26 H 0.096 0.904 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.096 0.904 30 H 0.054 0.946 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.052 0.948 36 H 0.019 0.981 37 H 0.020 0.980 38 H 0.072 0.928 39 H 0.055 0.945 40 H 0.100 0.900 41 H 0.095 0.905 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -11.441 18.379 2.437 21.786 hybrid contribution -0.249 -0.856 -0.282 0.935 sum -11.690 17.524 2.155 21.175 Atomic orbital electron populations 1.24899 0.95968 1.00864 1.01358 1.23117 0.94525 1.00428 1.00223 1.18721 0.84165 0.99519 1.02358 1.21983 0.87596 0.96046 1.01103 1.62172 1.06607 1.46165 1.11677 1.22248 0.94897 1.01072 0.89344 1.22130 0.94051 0.92403 0.98221 1.62008 1.07729 1.44827 1.10526 1.22126 0.86850 0.95930 1.01645 1.22217 0.96669 0.89150 0.92890 1.87936 1.78446 1.17845 1.45734 1.20165 0.93820 0.77757 0.96286 1.21105 1.34681 0.91463 1.07412 0.91540 1.24953 0.95305 0.98090 0.96306 1.69976 1.39599 1.14886 1.29557 0.86304 0.78395 0.80471 0.81467 1.19486 1.20904 1.20909 1.22173 0.94007 1.00495 0.90316 1.22148 0.94844 0.92749 0.97230 0.76703 0.89461 0.88762 0.90432 0.94187 0.93404 0.90382 0.94574 0.90182 0.90288 0.94097 0.94433 0.94755 0.98067 0.97985 0.92818 0.94512 0.89981 0.90475 0.93312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.87 19.25 29.55 0.57 -1.30 16 2 C -0.18 -1.79 13.34 -37.12 -0.50 -2.29 16 3 C -0.01 -0.09 5.64 -29.52 -0.17 -0.26 16 4 C 0.06 0.60 4.91 -3.83 -0.02 0.58 16 5 N -0.54 -6.10 4.71 -234.47 -1.10 -7.21 16 6 C 0.05 0.61 5.41 -3.77 -0.02 0.59 16 7 C 0.06 0.76 5.57 -3.77 -0.02 0.74 16 8 N -0.53 -8.02 4.58 -234.46 -1.07 -9.09 16 9 C 0.06 0.95 5.39 -3.82 -0.02 0.92 16 10 C 0.07 1.30 6.13 37.16 0.23 1.53 16 11 O -0.38 -9.41 10.27 -35.23 -0.36 -9.77 16 12 C 0.19 5.45 5.69 36.01 0.20 5.66 16 13 C -0.51 -15.30 9.43 -34.44 -0.32 -15.62 16 14 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 15 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 16 N -0.90 -27.39 13.29 55.43 0.74 -26.65 16 17 Si 0.91 22.22 29.54 -169.99 -5.02 17.20 16 18 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 C 0.06 0.78 5.43 -3.77 -0.02 0.76 16 22 C 0.06 0.72 5.61 -3.77 -0.02 0.70 16 23 H 0.22 1.15 7.80 -54.10 -0.42 0.73 16 24 H 0.09 0.72 6.49 -51.93 -0.34 0.38 16 25 H 0.09 0.77 8.14 -51.92 -0.42 0.35 16 26 H 0.08 0.74 8.03 -51.93 -0.42 0.32 16 27 H 0.04 0.43 8.12 -51.93 -0.42 0.01 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.08 0.73 6.34 -51.93 -0.33 0.40 16 30 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.99 8.00 -51.93 -0.42 0.57 16 32 H 0.08 1.19 7.85 -51.93 -0.41 0.79 16 33 H 0.04 0.53 8.00 -51.93 -0.42 0.11 16 34 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.03 0.64 6.74 -51.93 -0.35 0.29 16 36 H 0.00 0.04 8.14 -51.93 -0.42 -0.38 16 37 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 38 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 39 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.08 1.16 6.72 -51.93 -0.35 0.82 16 41 H 0.08 0.82 8.07 -51.93 -0.42 0.40 16 42 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 344.37 15.07 5.19 5.19 Total: -1.00 -32.79 344.37 -9.05 -41.84 By element: Atomic # 1 Polarization: 2.20 SS G_CDS: -7.21 Total: -5.01 kcal Atomic # 6 Polarization: -6.29 SS G_CDS: -0.20 Total: -6.50 kcal Atomic # 7 Polarization: -41.51 SS G_CDS: -1.44 Total: -42.95 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: -0.36 Total: -9.77 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.79 -9.05 -41.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815077458.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.352 kcal (2) G-P(sol) polarization free energy of solvation -32.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds