Wall clock time and date at job start Mon Mar 30 2020 19:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47052 * 2 1 4 4 C 1.50702 * 109.47235 * 179.97438 * 3 2 1 5 5 O 1.21278 * 119.99677 * 0.02562 * 4 3 2 6 6 N 1.34777 * 120.00068 * 180.02562 * 4 3 2 7 7 C 1.47144 * 121.00929 * 0.02562 * 6 4 3 8 8 C 1.53056 * 107.67393 * 237.42774 * 7 6 4 9 9 C 1.51140 * 111.10432 * 305.57528 * 8 7 6 10 10 H 1.08998 * 108.45978 * 174.64847 * 9 8 7 11 11 C 1.53999 * 112.62646 * 54.73572 * 9 8 7 12 12 H 1.08995 * 112.71791 * 75.55028 * 11 9 8 13 13 C 1.56014 * 100.38402 * 196.69542 * 11 9 8 14 14 C 1.54517 * 102.70525 * 36.66885 * 13 11 9 15 15 N 1.46471 * 113.21666 * 294.93258 * 9 8 7 16 16 C 1.36936 * 126.05546 * 329.77560 * 15 9 8 17 17 H 1.07998 * 119.99707 * 9.57627 * 16 15 9 18 18 C 1.38814 * 120.00013 * 189.58481 * 16 15 9 19 19 N 1.31614 * 119.99949 * 209.01345 * 18 16 15 20 20 Si 1.86796 * 119.99832 * 29.01075 * 18 16 15 21 21 H 1.48498 * 109.47344 * 275.38117 * 20 18 16 22 22 H 1.48507 * 109.47069 * 155.38555 * 20 18 16 23 23 H 1.48495 * 109.47335 * 35.38559 * 20 18 16 24 24 C 1.46515 * 121.01364 * 179.97438 * 6 4 3 25 25 H 1.08994 * 109.47194 * 299.99406 * 1 2 3 26 26 H 1.08997 * 109.46875 * 59.99639 * 1 2 3 27 27 H 1.09001 * 109.46793 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.47228 * 240.00541 * 2 1 3 29 29 H 1.08999 * 109.47327 * 120.00599 * 2 1 3 30 30 H 1.09008 * 109.46662 * 60.00194 * 3 2 1 31 31 H 1.08999 * 109.47544 * 300.00466 * 3 2 1 32 32 H 1.08994 * 109.82355 * 117.88477 * 7 6 4 33 33 H 1.09000 * 109.87503 * 356.99760 * 7 6 4 34 34 H 1.08998 * 109.14705 * 185.15317 * 8 7 6 35 35 H 1.09005 * 109.10520 * 65.96682 * 8 7 6 36 36 H 1.09001 * 110.78205 * 155.14731 * 13 11 9 37 37 H 1.08999 * 110.78485 * 278.58162 * 13 11 9 38 38 H 1.08996 * 110.01223 * 218.06202 * 14 13 11 39 39 H 1.09006 * 109.79928 * 96.81929 * 14 13 11 40 40 H 0.97000 * 120.00199 * 4.89319 * 19 18 16 41 41 H 1.09001 * 109.34796 * 244.65868 * 24 6 4 42 42 H 1.09007 * 109.34718 * 4.35158 * 24 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4426 0.0006 5 8 4.1534 0.3922 0.0006 6 7 4.2209 2.6098 0.0013 7 6 3.5077 3.8968 0.0019 8 6 3.9693 4.6844 -1.2266 9 6 5.4748 4.8140 -1.2559 10 1 5.7616 5.2953 -2.1909 11 6 6.1884 3.4519 -1.1730 12 1 6.1480 2.8978 -2.1107 13 6 7.6271 3.9115 -0.7819 14 6 7.3578 5.1033 0.1640 15 7 6.0077 5.6078 -0.1463 16 6 5.3677 6.6396 0.4869 17 1 4.3247 6.8336 0.2843 18 6 6.0594 7.4363 1.3890 19 7 5.4193 8.0099 2.3858 20 14 7.8985 7.6941 1.1882 21 1 8.6287 6.5698 1.8271 22 1 8.2928 8.9714 1.8350 23 1 8.2363 7.7461 -0.2569 24 6 5.6858 2.6357 0.0025 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6766 1.9563 0.8901 31 1 1.6766 1.9564 -0.8899 32 1 3.7480 4.4521 0.9085 33 1 2.4327 3.7248 -0.0519 34 1 3.5250 5.6795 -1.2010 35 1 3.6371 4.1678 -2.1271 36 1 8.1597 3.1151 -0.2622 37 1 8.1813 4.2386 -1.6617 38 1 8.0951 5.8879 -0.0053 39 1 7.3998 4.7687 1.2006 40 1 4.4795 7.8199 2.5321 41 1 6.0383 3.0822 0.9323 42 1 6.0651 1.6167 -0.0754 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036623948.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:25:00 Heat of formation + Delta-G solvation = -16.732742 kcal Electronic energy + Delta-G solvation = -21658.299591 eV Core-core repulsion = 18638.588987 eV Total energy + Delta-G solvation = -3019.710604 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.28539 -38.53429 -35.16781 -34.44211 -32.99833 -31.73048 -30.20622 -28.51360 -27.40022 -25.12037 -23.52678 -22.75292 -21.73606 -20.66120 -19.47235 -18.08013 -17.22703 -16.73897 -15.86246 -15.80458 -15.46398 -14.80194 -14.37975 -14.08168 -13.64514 -13.47066 -13.12852 -13.04340 -12.64949 -12.54127 -12.08055 -12.00511 -11.80994 -11.59294 -11.42038 -11.17395 -11.09710 -10.85529 -10.80771 -10.70043 -10.42960 -10.15729 -9.96589 -9.58460 -9.48138 -9.19164 -8.48614 -8.23574 -7.08820 -6.38172 -3.19005 2.84593 3.27975 3.44178 3.53266 3.70242 4.62186 4.63577 4.81254 4.84033 4.93645 5.05055 5.11927 5.29921 5.32732 5.40711 5.42724 5.45152 5.55836 5.57671 5.64909 5.75133 5.81500 5.83164 5.91557 5.98056 6.07599 6.11448 6.17198 6.22286 6.24728 6.39358 6.50625 6.52564 6.59579 6.71858 6.78653 6.85997 7.68330 7.73665 8.31194 8.40626 8.98415 9.57817 10.25502 11.10967 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.028404 B = 0.005682 C = 0.005152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.534571 B = 4926.977491 C = 5433.149574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.108 4.108 3 C -0.140 4.140 4 C 0.511 3.489 5 O -0.557 6.557 6 N -0.603 5.603 7 C 0.114 3.886 8 C -0.126 4.126 9 C 0.170 3.830 10 H 0.022 0.978 11 C -0.115 4.115 12 H 0.083 0.917 13 C -0.127 4.127 14 C 0.117 3.883 15 N -0.599 5.599 16 C -0.329 4.329 17 H 0.081 0.919 18 C -0.011 4.011 19 N -0.912 5.912 20 Si 1.050 2.950 21 H -0.295 1.295 22 H -0.301 1.301 23 H -0.294 1.294 24 C 0.125 3.875 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.055 0.945 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.029 0.971 39 H 0.040 0.960 40 H 0.263 0.737 41 H 0.074 0.926 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.469 -11.680 -6.646 14.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.146 4.146 3 C -0.179 4.179 4 C 0.300 3.700 5 O -0.436 6.436 6 N -0.335 5.335 7 C -0.009 4.009 8 C -0.165 4.165 9 C 0.063 3.937 10 H 0.039 0.961 11 C -0.135 4.135 12 H 0.101 0.899 13 C -0.166 4.166 14 C -0.008 4.008 15 N -0.326 5.326 16 C -0.455 4.455 17 H 0.099 0.901 18 C -0.212 4.212 19 N -0.552 5.552 20 Si 0.884 3.116 21 H -0.223 1.223 22 H -0.229 1.229 23 H -0.222 1.222 24 C 0.003 3.997 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.107 0.893 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.046 0.954 39 H 0.058 0.942 40 H 0.073 0.927 41 H 0.092 0.908 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.921 -11.312 -5.959 13.373 hybrid contribution -1.152 -0.496 -0.744 1.458 sum -5.073 -11.808 -6.703 14.495 Atomic orbital electron populations 1.21796 0.95680 1.01713 1.01791 1.21271 0.95019 0.94964 1.03341 1.21724 0.92356 0.99693 1.04176 1.20679 0.90232 0.83184 0.75908 1.90641 1.70551 1.31111 1.51340 1.48136 1.07311 1.06088 1.71964 1.21788 0.95130 0.83235 1.00723 1.21541 0.97673 1.00521 0.96802 1.20219 0.91813 0.89793 0.91921 0.96082 1.22493 0.96163 0.96909 0.97957 0.89873 1.22851 0.95941 0.98058 0.99732 1.21738 0.88228 0.93727 0.97129 1.44671 1.13971 1.36569 1.37403 1.19943 0.95152 1.08710 1.21700 0.90088 1.25659 1.05594 0.96453 0.93524 1.70909 1.11756 1.47479 1.25049 0.84018 0.77282 0.75420 0.74920 1.22257 1.22867 1.22185 1.21268 0.79143 1.00512 0.98792 0.92675 0.92744 0.92585 0.91435 0.91385 0.89059 0.89124 0.89254 0.90811 0.90496 0.92644 0.91140 0.91480 0.95390 0.94234 0.92683 0.90811 0.90048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.91 37.16 0.37 -0.93 16 2 C -0.11 -1.19 5.22 -26.73 -0.14 -1.33 16 3 C -0.14 -1.63 4.06 -27.88 -0.11 -1.74 16 4 C 0.51 8.05 7.71 -10.98 -0.08 7.97 16 5 O -0.56 -10.43 15.41 5.56 0.09 -10.34 16 6 N -0.60 -9.78 2.92 -173.92 -0.51 -10.29 16 7 C 0.11 1.79 6.26 -3.66 -0.02 1.77 16 8 C -0.13 -2.08 5.15 -27.64 -0.14 -2.23 16 9 C 0.17 3.19 2.89 -68.36 -0.20 3.00 16 10 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 11 C -0.11 -1.89 3.79 -89.16 -0.34 -2.22 16 12 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 13 C -0.13 -2.10 6.25 -24.32 -0.15 -2.25 16 14 C 0.12 2.46 4.19 -2.74 -0.01 2.44 16 15 N -0.60 -13.58 3.01 -164.48 -0.50 -14.07 16 16 C -0.33 -8.62 9.22 -15.06 -0.14 -8.76 16 17 H 0.08 2.19 6.88 -52.49 -0.36 1.83 16 18 C -0.01 -0.31 5.42 -17.43 -0.09 -0.40 16 19 N -0.91 -27.33 13.70 55.49 0.76 -26.57 16 20 Si 1.05 26.10 24.72 -169.99 -4.20 21.90 16 21 H -0.29 -6.97 6.70 56.52 0.38 -6.59 16 22 H -0.30 -7.66 7.11 56.52 0.40 -7.26 16 23 H -0.29 -7.08 6.82 56.52 0.39 -6.70 16 24 C 0.13 2.13 5.37 -4.71 -0.03 2.10 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.79 8.10 -51.92 -0.42 0.37 16 29 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 30 H 0.09 0.97 7.90 -51.92 -0.41 0.56 16 31 H 0.09 0.92 7.78 -51.93 -0.40 0.52 16 32 H 0.09 1.70 7.52 -51.93 -0.39 1.31 16 33 H 0.07 0.94 6.00 -51.93 -0.31 0.62 16 34 H 0.08 1.36 7.03 -51.93 -0.37 0.99 16 35 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 1.02 7.94 -51.93 -0.41 0.61 16 37 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.03 0.63 4.02 -51.93 -0.21 0.43 16 39 H 0.04 0.88 7.43 -51.93 -0.39 0.49 16 40 H 0.26 7.75 8.73 -40.82 -0.36 7.40 16 41 H 0.07 1.39 6.76 -51.93 -0.35 1.04 16 42 H 0.08 1.38 7.00 -51.93 -0.36 1.02 16 LS Contribution 314.03 15.07 4.73 4.73 Total: -1.00 -30.68 314.03 -7.67 -38.36 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -6.96 Total: -1.13 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: -1.09 Total: -2.58 kcal Atomic # 7 Polarization: -50.69 SS G_CDS: -0.24 Total: -50.94 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.09 Total: -10.34 kcal Atomic # 14 Polarization: 26.10 SS G_CDS: -4.20 Total: 21.90 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.68 -7.67 -38.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036623948.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.626 kcal (2) G-P(sol) polarization free energy of solvation -30.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds