Wall clock time and date at job start Mon Mar 30 2020 19:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47565 * 2 1 4 4 C 1.50701 * 109.47292 * 180.02562 * 3 2 1 5 5 O 1.21279 * 120.00071 * 359.97438 * 4 3 2 6 6 N 1.34776 * 119.99681 * 180.02562 * 4 3 2 7 7 C 1.46600 * 119.68717 * 359.97438 * 6 4 3 8 8 C 1.53959 * 110.57605 * 227.82257 * 7 6 4 9 9 C 1.51514 * 107.34644 * 308.94705 * 8 7 6 10 10 H 1.09000 * 109.28047 * 306.97739 * 9 8 7 11 11 C 1.55363 * 107.79197 * 64.86105 * 9 8 7 12 12 H 1.08999 * 111.50884 * 50.39778 * 11 9 8 13 13 C 1.53747 * 100.22090 * 169.08044 * 11 9 8 14 14 C 1.55287 * 101.84046 * 320.90799 * 13 11 9 15 15 N 1.45461 * 117.34645 * 181.91156 * 9 8 7 16 16 C 1.36934 * 126.40890 * 30.62649 * 15 9 8 17 17 H 1.08004 * 119.99829 * 359.97438 * 16 15 9 18 18 C 1.38810 * 120.00139 * 179.97438 * 16 15 9 19 19 N 1.31619 * 120.00263 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99740 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47116 * 60.00413 * 20 18 16 22 22 H 1.48505 * 109.46865 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47216 * 299.99933 * 20 18 16 24 24 C 1.47721 * 119.68185 * 179.97438 * 6 4 3 25 25 H 1.09009 * 109.46987 * 60.00146 * 1 2 3 26 26 H 1.08996 * 109.47421 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47472 * 300.00591 * 1 2 3 28 28 H 1.09005 * 109.47153 * 239.99425 * 2 1 3 29 29 H 1.09002 * 109.47284 * 119.99620 * 2 1 3 30 30 H 1.08997 * 109.47208 * 59.99247 * 3 2 1 31 31 H 1.09009 * 109.46848 * 299.99938 * 3 2 1 32 32 H 1.08995 * 109.25533 * 107.53997 * 7 6 4 33 33 H 1.08999 * 109.24984 * 348.10486 * 7 6 4 34 34 H 1.08998 * 109.87643 * 189.48334 * 8 7 6 35 35 H 1.08999 * 109.88083 * 68.41108 * 8 7 6 36 36 H 1.09002 * 110.95368 * 202.76899 * 13 11 9 37 37 H 1.09000 * 110.95241 * 79.04207 * 13 11 9 38 38 H 1.08998 * 109.92217 * 263.13697 * 14 13 11 39 39 H 1.08999 * 109.92048 * 141.83114 * 14 13 11 40 40 H 0.96994 * 119.99884 * 180.02562 * 19 18 16 41 41 H 1.09001 * 110.06682 * 247.15356 * 24 6 4 42 42 H 1.09001 * 110.07116 * 8.61951 * 24 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 -0.0006 5 8 4.1534 0.3920 -0.0006 6 7 4.2209 2.6096 -0.0002 7 6 3.4810 3.8751 0.0003 8 6 4.0433 4.8311 -1.0675 9 6 5.5427 4.9056 -0.8626 10 1 5.7516 5.1638 0.1756 11 6 6.1320 3.4976 -1.1520 12 1 5.7835 3.1074 -2.1082 13 6 7.6328 3.8301 -1.1785 14 6 7.6424 5.2021 -1.9058 15 7 6.2935 5.7919 -1.7381 16 6 5.8389 6.9540 -2.3019 17 1 4.8306 7.2894 -2.1090 18 6 6.6741 7.7010 -3.1213 19 7 7.9027 7.2921 -3.3567 20 14 6.0535 9.2860 -3.8910 21 1 5.6594 10.2356 -2.8193 22 1 7.1301 9.8899 -4.7167 23 1 4.8778 8.9924 -4.7492 24 6 5.6981 2.6014 -0.0003 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9563 0.8899 31 1 1.6767 1.9563 -0.8901 32 1 3.5673 4.3416 0.9816 33 1 2.4303 3.6772 -0.2119 34 1 3.6030 5.8209 -0.9476 35 1 3.8239 4.4451 -2.0630 36 1 8.1875 3.0836 -1.7470 37 1 8.0296 3.9221 -0.1674 38 1 7.8561 5.0595 -2.9650 39 1 8.3915 5.8548 -1.4576 40 1 8.4864 7.8143 -3.9290 41 1 6.0743 2.9965 0.9434 42 1 6.0665 1.5871 -0.1541 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036623949.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:25:04 Heat of formation + Delta-G solvation = -20.257734 kcal Electronic energy + Delta-G solvation = -21136.012876 eV Core-core repulsion = 18116.149418 eV Total energy + Delta-G solvation = -3019.863459 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.24559 -38.33088 -35.37199 -34.51362 -32.68585 -31.54701 -29.90744 -28.55453 -27.37140 -24.87740 -23.50116 -22.40365 -21.71907 -20.07595 -19.71095 -18.74782 -17.09907 -16.22325 -15.96553 -15.72802 -15.02789 -14.53834 -14.34670 -13.91064 -13.81398 -13.48404 -13.17090 -12.78619 -12.61459 -12.42412 -12.10360 -11.91512 -11.63714 -11.48710 -11.39302 -11.24332 -10.87652 -10.82267 -10.79930 -10.70313 -10.18436 -10.09659 -9.89879 -9.63937 -9.58490 -9.44285 -8.63377 -8.47305 -6.85006 -5.72628 -3.06027 2.74117 3.11838 3.38725 3.42989 3.44592 4.47346 4.53233 4.75250 4.86826 5.01807 5.06230 5.22431 5.30077 5.35596 5.36270 5.48546 5.51655 5.56136 5.61671 5.64963 5.80883 5.86143 5.90537 6.01706 6.04319 6.15704 6.18078 6.18781 6.23620 6.36331 6.51084 6.61677 6.63964 6.84755 7.06191 7.53067 7.54590 7.60981 7.79765 8.23356 8.29285 9.18071 9.81776 10.50151 11.39851 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.029211 B = 0.004684 C = 0.004186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.325757 B = 5976.993039 C = 6686.765434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.109 4.109 3 C -0.141 4.141 4 C 0.510 3.490 5 O -0.551 6.551 6 N -0.609 5.609 7 C 0.111 3.889 8 C -0.130 4.130 9 C 0.167 3.833 10 H 0.019 0.981 11 C -0.124 4.124 12 H 0.078 0.922 13 C -0.136 4.136 14 C 0.177 3.823 15 N -0.595 5.595 16 C -0.227 4.227 17 H 0.078 0.922 18 C -0.008 4.008 19 N -0.921 5.921 20 Si 0.910 3.090 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.125 3.875 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.054 0.946 39 H 0.038 0.962 40 H 0.253 0.747 41 H 0.067 0.933 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.896 -9.845 7.424 16.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.147 4.147 3 C -0.181 4.181 4 C 0.298 3.702 5 O -0.429 6.429 6 N -0.342 5.342 7 C -0.013 4.013 8 C -0.169 4.169 9 C 0.059 3.941 10 H 0.036 0.964 11 C -0.145 4.145 12 H 0.097 0.903 13 C -0.175 4.175 14 C 0.053 3.947 15 N -0.319 5.319 16 C -0.356 4.356 17 H 0.096 0.904 18 C -0.204 4.204 19 N -0.569 5.569 20 Si 0.741 3.259 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.212 1.212 24 C 0.003 3.997 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.109 0.891 31 H 0.111 0.889 32 H 0.083 0.917 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.056 0.944 40 H 0.063 0.937 41 H 0.085 0.915 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -10.471 -10.179 7.276 16.315 hybrid contribution -0.261 1.108 -0.493 1.241 sum -10.732 -9.071 6.783 15.604 Atomic orbital electron populations 1.21795 0.95639 1.01788 1.01769 1.21279 0.95068 0.94922 1.03438 1.21762 0.92302 0.99849 1.04179 1.20757 0.90294 0.83367 0.75776 1.90659 1.70516 1.31109 1.50657 1.48366 1.07260 1.05948 1.72602 1.21806 0.95461 0.84131 0.99878 1.21888 0.97975 0.98712 0.98324 1.20625 0.90437 0.89033 0.94003 0.96384 1.22644 0.97236 0.96728 0.97862 0.90326 1.22705 0.94235 0.99948 1.00570 1.21530 0.86722 0.87957 0.98483 1.44203 1.09746 1.22865 1.55131 1.18946 0.97264 0.96624 1.22718 0.90439 1.24794 0.96136 0.99148 1.00311 1.69929 1.06283 1.39251 1.41414 0.86232 0.77506 0.83208 0.78999 1.21190 1.21616 1.21210 1.21604 0.78231 1.01388 0.98442 0.92665 0.92546 0.92747 0.91307 0.91390 0.89094 0.88895 0.91697 0.90169 0.90518 0.91399 0.92065 0.92327 0.92735 0.94377 0.93691 0.91512 0.89334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.91 37.15 0.37 -0.80 16 2 C -0.11 -1.10 5.22 -26.74 -0.14 -1.24 16 3 C -0.14 -1.45 4.03 -27.88 -0.11 -1.56 16 4 C 0.51 7.34 7.67 -10.99 -0.08 7.25 16 5 O -0.55 -9.78 15.34 5.56 0.09 -9.69 16 6 N -0.61 -8.77 3.00 -172.48 -0.52 -9.28 16 7 C 0.11 1.40 6.21 -3.49 -0.02 1.38 16 8 C -0.13 -2.13 5.48 -26.98 -0.15 -2.28 16 9 C 0.17 3.31 2.57 -67.99 -0.18 3.13 16 10 H 0.02 0.38 7.90 -51.93 -0.41 -0.03 16 11 C -0.12 -2.23 2.86 -89.36 -0.26 -2.49 16 12 H 0.08 1.53 8.11 -51.93 -0.42 1.11 16 13 C -0.14 -2.54 6.54 -25.13 -0.16 -2.70 16 14 C 0.18 4.27 5.45 -1.91 -0.01 4.26 16 15 N -0.60 -14.77 3.35 -163.10 -0.55 -15.31 16 16 C -0.23 -6.13 9.88 -15.06 -0.15 -6.28 16 17 H 0.08 1.99 7.21 -52.48 -0.38 1.61 16 18 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 19 N -0.92 -26.86 10.44 55.49 0.58 -26.28 16 20 Si 0.91 21.76 29.55 -169.99 -5.02 16.74 16 21 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 24 C 0.13 1.95 5.95 -3.76 -0.02 1.93 16 25 H 0.05 0.40 8.14 -51.92 -0.42 -0.03 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.78 8.10 -51.93 -0.42 0.35 16 29 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 30 H 0.09 0.76 7.99 -51.93 -0.41 0.35 16 31 H 0.09 0.85 7.55 -51.92 -0.39 0.46 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 0.79 5.83 -51.93 -0.30 0.49 16 34 H 0.08 1.26 7.62 -51.93 -0.40 0.87 16 35 H 0.07 1.19 8.11 -51.93 -0.42 0.76 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.06 1.01 8.11 -51.93 -0.42 0.59 16 38 H 0.05 1.46 7.21 -51.93 -0.37 1.09 16 39 H 0.04 1.00 7.77 -51.93 -0.40 0.60 16 40 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 41 H 0.07 0.99 8.06 -51.93 -0.42 0.57 16 42 H 0.09 1.44 6.99 -51.93 -0.36 1.07 16 LS Contribution 323.98 15.07 4.88 4.88 Total: -1.00 -31.21 323.98 -8.76 -39.97 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -7.21 Total: -1.32 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: -1.01 Total: 0.30 kcal Atomic # 7 Polarization: -50.39 SS G_CDS: -0.48 Total: -50.87 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.09 Total: -9.69 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.21 -8.76 -39.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036623949.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.711 kcal (2) G-P(sol) polarization free energy of solvation -31.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds