Wall clock time and date at job start Mon Mar 30 2020 19:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.52241 * 2 1 4 4 C 1.53115 * 109.52460 * 120.12731 * 2 1 3 5 5 C 1.53042 * 109.27962 * 177.62115 * 4 2 1 6 6 N 1.46842 * 109.52225 * 300.82177 * 5 4 2 7 7 C 1.46905 * 110.99493 * 185.83572 * 6 5 4 8 8 C 1.53003 * 109.46734 * 74.77757 * 7 6 5 9 9 C 1.50697 * 115.55086 * 54.29719 * 8 7 6 10 10 H 1.08003 * 120.00240 * 267.84523 * 9 8 7 11 11 C 1.37876 * 119.99995 * 87.85472 * 9 8 7 12 12 N 1.31513 * 120.00126 * 352.34465 * 11 9 8 13 13 Si 1.86798 * 120.00135 * 172.35162 * 11 9 8 14 14 H 1.48499 * 109.47324 * 59.99685 * 13 11 9 15 15 H 1.48498 * 109.47339 * 299.99713 * 13 11 9 16 16 H 1.48501 * 109.47148 * 179.97438 * 13 11 9 17 17 C 1.52997 * 117.49737 * 199.96778 * 8 7 6 18 18 C 1.53001 * 117.49544 * 268.62579 * 8 7 6 19 19 C 1.46843 * 111.19837 * 61.74565 * 6 5 4 20 20 H 1.09005 * 109.46217 * 58.26697 * 19 6 5 21 21 C 1.50701 * 109.46608 * 178.23657 * 19 6 5 22 22 N 1.34772 * 120.00430 * 208.21699 * 21 19 6 23 23 O 1.21287 * 119.99494 * 28.21665 * 21 19 6 24 24 C 1.53036 * 109.52217 * 298.25460 * 19 6 5 25 25 H 1.08998 * 109.47246 * 299.87286 * 1 2 3 26 26 H 1.09001 * 109.47264 * 59.86746 * 1 2 3 27 27 H 1.08991 * 109.47332 * 179.87050 * 1 2 3 28 28 H 1.09009 * 109.50136 * 57.68456 * 4 2 1 29 29 H 1.08997 * 109.53854 * 297.58592 * 4 2 1 30 30 H 1.08998 * 109.45834 * 180.80686 * 5 4 2 31 31 H 1.09003 * 109.45040 * 60.83701 * 5 4 2 32 32 H 1.08991 * 109.47284 * 314.77422 * 7 6 5 33 33 H 1.09002 * 109.47128 * 194.76866 * 7 6 5 34 34 H 0.97003 * 119.99717 * 3.38624 * 12 11 9 35 35 H 1.08997 * 117.50387 * 215.00034 * 17 8 7 36 36 H 1.09000 * 117.49990 * 0.02562 * 17 8 7 37 37 H 1.08999 * 117.49955 * 359.97438 * 18 8 7 38 38 H 1.09000 * 117.49755 * 145.00393 * 18 8 7 39 39 H 0.97002 * 119.99657 * 359.97438 * 22 21 19 40 40 H 0.96997 * 120.00032 * 179.97438 * 22 21 19 41 41 H 1.08996 * 109.50394 * 299.23910 * 24 19 6 42 42 H 1.09006 * 109.53579 * 179.13733 * 24 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0417 -0.7243 1.2482 5 6 3.5709 -0.7731 1.2128 6 7 4.0115 -1.4766 0.0015 7 6 5.4686 -1.6641 0.0023 8 6 5.8394 -2.7734 0.9887 9 6 5.1344 -4.0892 0.7823 10 1 4.2130 -4.2962 1.3063 11 6 5.6657 -5.0288 -0.0755 12 7 6.7012 -4.7228 -0.8263 13 14 4.9146 -6.7365 -0.1714 14 1 3.4943 -6.6297 -0.5915 15 1 4.9889 -7.3856 1.1621 16 1 5.6632 -7.5516 -1.1616 17 6 7.2834 -2.8170 1.4925 18 6 6.1599 -2.3616 2.4270 19 6 3.5722 -0.7735 -1.2104 20 1 3.9679 0.2422 -1.2047 21 6 4.0809 -1.5034 -2.4268 22 7 4.3195 -0.8270 -3.5679 23 8 4.2755 -2.6995 -2.3789 24 6 2.0430 -0.7247 -1.2474 25 1 -0.3634 0.5118 0.8911 26 1 -0.3634 0.5159 -0.8888 27 1 -0.3633 -1.0276 -0.0023 28 1 1.6456 -1.7397 1.2677 29 1 1.7152 -0.1891 2.1398 30 1 3.9378 -1.3008 2.0931 31 1 3.9664 0.2426 1.2071 32 1 5.9543 -0.7352 0.3008 33 1 5.7997 -1.9422 -0.9983 34 1 7.1217 -3.8528 -0.7413 35 1 7.7236 -3.7974 1.6746 36 1 7.9691 -2.0553 1.1215 37 1 6.1070 -1.3004 2.6704 38 1 5.8609 -3.0425 3.2239 39 1 4.1634 0.1296 -3.6063 40 1 4.6472 -1.2968 -4.3506 41 1 1.6469 -1.7399 -1.2671 42 1 1.7169 -0.1894 -2.1392 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602811607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:25:44 Heat of formation + Delta-G solvation = -16.170210 kcal Electronic energy + Delta-G solvation = -22076.138132 eV Core-core repulsion = 19056.451922 eV Total energy + Delta-G solvation = -3019.686211 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.88150 -37.65698 -36.62364 -33.66115 -33.15975 -31.48406 -30.60959 -28.43727 -25.09191 -24.20062 -23.85180 -22.04651 -21.10873 -19.91139 -19.30066 -19.04048 -16.97009 -16.43817 -16.13104 -15.16322 -14.70360 -14.34877 -14.11078 -13.66111 -13.54665 -13.48732 -13.21397 -12.90702 -12.49289 -12.18365 -12.08379 -11.68424 -11.62817 -11.11703 -11.00560 -10.68162 -10.57681 -10.47134 -10.42771 -10.24826 -10.08356 -9.88525 -9.28547 -9.15468 -9.06549 -8.22076 -8.15104 -7.97674 -7.41986 -5.96657 -3.62107 3.22888 3.63041 3.69751 3.80821 3.84688 4.46368 4.83353 4.92645 4.96870 4.98501 5.31245 5.38259 5.41553 5.49398 5.63492 5.72164 5.76757 5.78175 5.82025 5.87816 6.06660 6.10335 6.19707 6.21799 6.27974 6.38967 6.39758 6.46757 6.52702 6.67227 6.67877 6.84168 7.00403 7.20129 7.39243 7.46926 7.64012 7.87978 7.96593 8.63886 8.81916 8.87322 9.26676 10.07958 11.44086 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.016754 B = 0.007941 C = 0.007297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.804496 B = 3525.258953 C = 3836.441491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.090 4.090 3 H 0.063 0.937 4 C -0.112 4.112 5 C 0.061 3.939 6 N -0.484 5.484 7 C 0.095 3.905 8 C 0.045 3.955 9 C -0.536 4.536 10 H 0.047 0.953 11 C 0.034 3.966 12 N -0.907 5.907 13 Si 1.063 2.937 14 H -0.290 1.290 15 H -0.295 1.295 16 H -0.288 1.288 17 C -0.183 4.183 18 C -0.205 4.205 19 C 0.073 3.927 20 H 0.040 0.960 21 C 0.501 3.499 22 N -0.870 5.870 23 O -0.471 6.471 24 C -0.098 4.098 25 H 0.052 0.948 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.075 0.925 29 H 0.060 0.940 30 H 0.087 0.913 31 H 0.016 0.984 32 H -0.005 1.005 33 H 0.076 0.924 34 H 0.268 0.732 35 H 0.084 0.916 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.078 0.922 39 H 0.391 0.609 40 H 0.397 0.603 41 H 0.080 0.920 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.557 13.113 -1.312 15.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.109 4.109 3 H 0.081 0.919 4 C -0.150 4.150 5 C -0.067 4.067 6 N -0.208 5.208 7 C -0.033 4.033 8 C 0.044 3.956 9 C -0.574 4.574 10 H 0.065 0.935 11 C -0.171 4.171 12 N -0.543 5.543 13 Si 0.894 3.106 14 H -0.217 1.217 15 H -0.222 1.222 16 H -0.214 1.214 17 C -0.222 4.222 18 C -0.242 4.242 19 C -0.040 4.040 20 H 0.058 0.942 21 C 0.284 3.716 22 N -0.436 5.436 23 O -0.339 6.339 24 C -0.136 4.136 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.094 0.906 29 H 0.079 0.921 30 H 0.106 0.894 31 H 0.034 0.966 32 H 0.013 0.987 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.103 0.897 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.097 0.903 39 H 0.218 0.782 40 H 0.227 0.773 41 H 0.099 0.901 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.596 10.341 -1.864 13.575 hybrid contribution 0.434 2.792 0.391 2.853 sum -8.162 13.133 -1.473 15.532 Atomic orbital electron populations 1.21793 0.95190 1.02005 1.01127 1.21151 0.95416 0.98827 0.95456 0.91876 1.21671 0.95577 1.01367 0.96343 1.22117 0.94840 0.95206 0.94550 1.61467 1.14450 1.46485 0.98434 1.21894 0.84720 0.94733 1.01907 1.18996 0.92851 0.95318 0.88391 1.20868 1.09301 0.97594 1.29632 0.93454 1.25431 0.96314 1.03130 0.92210 1.70699 1.22509 1.25142 1.35915 0.83640 0.75718 0.75847 0.75425 1.21702 1.22169 1.21377 1.22752 0.92848 1.00552 1.06000 1.22961 1.06781 0.97808 0.96675 1.21533 0.96635 0.94729 0.91081 0.94196 1.20569 0.78180 0.88553 0.84331 1.43971 1.72579 1.12327 1.14765 1.90997 1.46718 1.13683 1.82535 1.21557 0.92539 1.02196 0.97319 0.92851 0.93054 0.92402 0.90611 0.92136 0.89430 0.96599 0.98697 0.90582 0.92081 0.89746 0.92166 0.92205 0.90337 0.78162 0.77255 0.90116 0.91965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.21 37.16 0.34 -1.16 16 2 C -0.09 -1.12 2.79 -90.50 -0.25 -1.37 16 3 H 0.06 0.73 8.14 -51.92 -0.42 0.30 16 4 C -0.11 -1.61 5.38 -26.65 -0.14 -1.76 16 5 C 0.06 1.06 5.26 -3.83 -0.02 1.04 16 6 N -0.48 -9.88 3.87 -228.08 -0.88 -10.77 16 7 C 0.09 2.19 4.47 -3.82 -0.02 2.17 16 8 C 0.05 1.15 0.82 -155.66 -0.13 1.02 16 9 C -0.54 -15.51 8.52 -34.44 -0.29 -15.80 16 10 H 0.05 1.42 7.83 -52.48 -0.41 1.01 16 11 C 0.03 1.02 5.36 -17.82 -0.10 0.93 16 12 N -0.91 -28.37 13.53 55.43 0.75 -27.62 16 13 Si 1.06 27.48 29.91 -169.99 -5.08 22.39 16 14 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 15 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 16 H -0.29 -7.48 7.11 56.52 0.40 -7.07 16 17 C -0.18 -4.44 8.55 -26.70 -0.23 -4.67 16 18 C -0.20 -4.59 8.47 -26.69 -0.23 -4.82 16 19 C 0.07 1.23 2.23 -68.88 -0.15 1.08 16 20 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 21 C 0.50 9.40 5.94 -10.99 -0.07 9.34 16 22 N -0.87 -11.52 8.87 31.22 0.28 -11.25 16 23 O -0.47 -11.83 16.21 5.55 0.09 -11.74 16 24 C -0.10 -1.40 4.64 -26.65 -0.12 -1.52 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.08 1.23 8.14 -51.92 -0.42 0.81 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.09 1.67 6.06 -51.93 -0.31 1.36 16 31 H 0.02 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.00 -0.11 7.96 -51.93 -0.41 -0.52 16 33 H 0.08 1.97 5.43 -51.93 -0.28 1.69 16 34 H 0.27 8.35 6.24 -40.82 -0.25 8.10 16 35 H 0.08 2.19 8.14 -51.93 -0.42 1.77 16 36 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 37 H 0.06 1.20 7.96 -51.93 -0.41 0.79 16 38 H 0.08 1.77 8.14 -51.93 -0.42 1.35 16 39 H 0.39 3.68 8.83 -40.82 -0.36 3.32 16 40 H 0.40 4.99 8.93 -40.82 -0.36 4.62 16 41 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 330.43 15.07 4.98 4.98 Total: -1.00 -34.61 330.43 -8.38 -42.99 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -7.11 Total: 6.53 kcal Atomic # 6 Polarization: -14.11 SS G_CDS: -1.40 Total: -15.52 kcal Atomic # 7 Polarization: -49.78 SS G_CDS: 0.15 Total: -49.64 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.09 Total: -11.74 kcal Atomic # 14 Polarization: 27.48 SS G_CDS: -5.08 Total: 22.39 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -34.61 -8.38 -42.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602811607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.819 kcal (2) G-P(sol) polarization free energy of solvation -34.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds