Wall clock time and date at job start Mon Mar 30 2020 19:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47562 * 2 1 4 4 C 1.53005 * 109.47165 * 240.00331 * 2 1 3 5 5 C 1.52999 * 109.47231 * 174.99945 * 4 2 1 6 6 N 1.46508 * 109.46844 * 180.02562 * 5 4 2 7 7 C 1.36929 * 119.99737 * 180.02562 * 6 5 4 8 8 H 1.08009 * 120.00133 * 0.02562 * 7 6 5 9 9 C 1.38809 * 119.99998 * 179.97438 * 7 6 5 10 10 N 1.31616 * 119.99899 * 0.02562 * 9 7 6 11 11 Si 1.86810 * 120.00190 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47022 * 90.00315 * 11 9 7 13 13 H 1.48500 * 109.47010 * 210.00187 * 11 9 7 14 14 H 1.48501 * 109.46693 * 330.00343 * 11 9 7 15 15 N 1.46497 * 109.47074 * 120.00636 * 2 1 3 16 16 C 1.34775 * 119.99967 * 274.99677 * 15 2 1 17 17 O 1.21281 * 120.00089 * 359.97438 * 16 15 2 18 18 C 1.50700 * 119.99977 * 180.02562 * 16 15 2 19 19 C 1.53004 * 109.47149 * 180.02562 * 18 16 15 20 20 H 1.08999 * 110.34319 * 55.82957 * 19 18 16 21 21 C 1.51106 * 110.38535 * 293.54453 * 19 18 16 22 22 C 1.30528 * 111.10324 * 224.63445 * 21 19 18 23 23 C 1.51097 * 111.10203 * 0.02562 * 22 21 19 24 24 C 1.54631 * 110.48453 * 178.18525 * 19 18 16 25 25 H 1.09005 * 109.46947 * 59.99496 * 1 2 3 26 26 H 1.09000 * 109.47734 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47274 * 299.99789 * 1 2 3 28 28 H 1.08999 * 109.47210 * 295.00194 * 4 2 1 29 29 H 1.09003 * 109.47052 * 54.99705 * 4 2 1 30 30 H 1.09000 * 109.47071 * 299.99707 * 5 4 2 31 31 H 1.08994 * 109.46880 * 60.00390 * 5 4 2 32 32 H 0.96993 * 119.99887 * 359.97438 * 6 5 4 33 33 H 0.97007 * 119.99947 * 179.97438 * 10 9 7 34 34 H 0.96999 * 120.00006 * 95.00207 * 15 2 1 35 35 H 1.08996 * 109.47252 * 60.00445 * 18 16 15 36 36 H 1.09000 * 109.47195 * 299.99378 * 18 16 15 37 37 H 1.07997 * 124.44647 * 44.37373 * 21 19 18 38 38 H 1.07996 * 124.44406 * 179.97438 * 22 21 19 39 39 H 1.08998 * 110.38609 * 257.61953 * 23 22 21 40 40 H 1.09001 * 110.48258 * 135.29661 * 23 22 21 41 41 H 1.09002 * 111.03445 * 261.52495 * 24 19 18 42 42 H 1.09002 * 111.03910 * 25.46464 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6132 -1.3138 6 7 4.0530 -1.3033 -2.5104 7 6 5.3950 -1.3400 -2.7799 8 1 6.0937 -0.8606 -2.1101 9 6 5.8577 -1.9942 -3.9133 10 7 5.0064 -2.5789 -4.7292 11 14 7.6886 -2.0449 -4.2806 12 1 8.2877 -3.2463 -3.6458 13 1 7.8973 -2.1053 -5.7496 14 1 8.3362 -0.8235 -3.7383 15 7 2.0183 -0.6907 1.1961 16 6 2.1470 -0.0185 2.3571 17 8 1.8591 1.1584 2.4116 18 6 2.6499 -0.7289 3.5873 19 6 2.7007 0.2540 4.7588 20 1 1.7228 0.7099 4.9136 21 6 3.7439 1.3180 4.5083 22 6 4.4661 1.5285 5.5751 23 6 4.0253 0.6395 6.7146 24 6 3.1710 -0.4623 6.0461 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.7516 -1.7714 -1.2058 29 1 1.6053 -0.2616 -2.1370 30 1 3.8531 0.4370 -1.3574 31 1 3.9994 -1.0728 -0.4261 32 1 3.4257 -1.7348 -3.1113 33 1 5.3297 -3.0358 -5.5216 34 1 2.2490 -1.6319 1.1524 35 1 3.6492 -1.1206 3.3977 36 1 1.9776 -1.5511 3.8324 37 1 3.8774 1.8334 3.5687 38 1 5.2732 2.2436 5.6350 39 1 3.4247 1.2051 7.4269 40 1 4.8900 0.2006 7.2123 41 1 2.3229 -0.7352 6.6741 42 1 3.7771 -1.3365 5.8083 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268340905.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:24:23 Heat of formation + Delta-G solvation = -49.829679 kcal Electronic energy + Delta-G solvation = -19944.954019 eV Core-core repulsion = 16923.808224 eV Total energy + Delta-G solvation = -3021.145795 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.07641 -39.33440 -37.74466 -36.06887 -33.66988 -32.83399 -31.51819 -29.76852 -29.41311 -26.50139 -25.79368 -23.33399 -22.21496 -21.45927 -21.20433 -19.64719 -19.18782 -17.94275 -17.19914 -16.84532 -16.67765 -16.33869 -15.69821 -15.48752 -15.19387 -15.08948 -14.62020 -14.29809 -13.94925 -13.38907 -13.13027 -12.92029 -12.89491 -12.84862 -12.75197 -12.66144 -12.39535 -12.26990 -12.06118 -12.02883 -12.00351 -11.89071 -11.65901 -11.63842 -10.96698 -10.69573 -10.00598 -9.77552 -9.02820 -7.97692 -5.26952 1.39995 1.46500 1.48069 1.56764 1.75688 2.31864 2.54217 3.35905 3.60428 3.69842 3.75291 4.00862 4.04774 4.08375 4.17202 4.37277 4.39805 4.55304 4.56661 4.61218 4.66535 4.69279 4.75842 4.79155 4.86727 4.98958 4.99567 5.04351 5.12893 5.22674 5.26194 5.30992 5.33572 5.44910 5.46520 5.61939 5.72261 5.99760 6.24965 6.66003 7.31432 7.36455 8.06289 8.30712 9.25642 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.018571 B = 0.003778 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.363370 B = 7410.019873 C = 8540.543684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.151 3.849 3 H 0.063 0.937 4 C -0.118 4.118 5 C 0.155 3.845 6 N -0.746 5.746 7 C -0.250 4.250 8 H 0.071 0.929 9 C -0.072 4.072 10 N -0.967 5.967 11 Si 0.973 3.027 12 H -0.283 1.283 13 H -0.293 1.293 14 H -0.273 1.273 15 N -0.717 5.717 16 C 0.508 3.492 17 O -0.581 6.581 18 C -0.128 4.128 19 C -0.051 4.051 20 H 0.073 0.927 21 C -0.168 4.168 22 C -0.179 4.179 23 C -0.099 4.099 24 C -0.116 4.116 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.049 0.951 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.003 0.997 31 H 0.024 0.976 32 H 0.376 0.624 33 H 0.253 0.747 34 H 0.411 0.589 35 H 0.104 0.896 36 H 0.123 0.877 37 H 0.097 0.903 38 H 0.125 0.875 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.594 2.006 21.958 23.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.046 3.954 3 H 0.082 0.918 4 C -0.156 4.156 5 C 0.028 3.972 6 N -0.389 5.389 7 C -0.382 4.382 8 H 0.089 0.911 9 C -0.265 4.265 10 N -0.618 5.618 11 Si 0.802 3.198 12 H -0.210 1.210 13 H -0.220 1.220 14 H -0.198 1.198 15 N -0.369 5.369 16 C 0.296 3.704 17 O -0.462 6.462 18 C -0.167 4.167 19 C -0.070 4.070 20 H 0.092 0.908 21 C -0.187 4.187 22 C -0.197 4.197 23 C -0.136 4.136 24 C -0.153 4.153 25 H 0.091 0.909 26 H 0.089 0.911 27 H 0.068 0.932 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.021 0.979 31 H 0.042 0.958 32 H 0.208 0.792 33 H 0.062 0.938 34 H 0.247 0.753 35 H 0.122 0.878 36 H 0.141 0.859 37 H 0.115 0.885 38 H 0.143 0.857 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.108 0.892 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.628 2.882 22.027 23.488 hybrid contribution 0.932 -0.240 -1.126 1.481 sum -6.696 2.642 20.901 22.106 Atomic orbital electron populations 1.22060 0.93736 1.02894 1.02236 1.20759 0.94762 0.96231 0.83666 0.91836 1.21890 0.94521 1.01755 0.97457 1.20746 0.93553 0.94001 0.88851 1.42562 1.04503 1.65323 1.26485 1.19599 0.85271 1.27876 1.05461 0.91136 1.25561 1.02090 1.01118 0.97716 1.69805 1.34630 1.41832 1.15517 0.85149 0.80001 0.78010 0.76652 1.20999 1.21959 1.19774 1.46151 1.66866 1.14654 1.09261 1.21270 0.76526 0.87081 0.85488 1.90665 1.51940 1.17768 1.85783 1.21774 1.04230 0.99616 0.91123 1.20793 0.98238 0.93676 0.94290 0.90834 1.23319 0.97352 0.99608 0.98376 1.23528 0.99628 1.00779 0.95736 1.21386 1.00001 0.95700 0.96522 1.22577 1.00221 0.97832 0.94660 0.90899 0.91060 0.93181 0.90225 0.90435 0.97865 0.95761 0.79232 0.93845 0.75266 0.87805 0.85868 0.88505 0.85701 0.90191 0.89970 0.89191 0.89762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.37 9.48 71.98 0.68 -2.68 16 2 C 0.15 4.02 2.57 44.99 0.12 4.14 16 3 H 0.06 2.01 7.58 -2.39 -0.02 1.99 16 4 C -0.12 -3.56 4.87 30.60 0.15 -3.41 16 5 C 0.15 6.21 6.15 86.38 0.53 6.74 16 6 N -0.75 -38.15 5.60 -343.44 -1.92 -40.07 16 7 C -0.25 -14.20 9.99 84.03 0.84 -13.36 16 8 H 0.07 3.90 7.83 -2.91 -0.02 3.87 16 9 C -0.07 -4.18 5.50 84.86 0.47 -3.71 16 10 N -0.97 -59.02 13.06 21.65 0.28 -58.74 16 11 Si 0.97 46.22 29.55 68.60 2.03 48.25 16 12 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 13 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 14 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 15 N -0.72 -16.89 4.53 -442.54 -2.00 -18.89 16 16 C 0.51 12.84 7.56 87.66 0.66 13.50 16 17 O -0.58 -19.26 14.34 -3.03 -0.04 -19.30 16 18 C -0.13 -2.25 5.12 29.85 0.15 -2.09 16 19 C -0.05 -0.99 2.54 -10.85 -0.03 -1.01 16 20 H 0.07 1.60 8.01 -2.39 -0.02 1.59 16 21 C -0.17 -3.99 9.19 26.26 0.24 -3.75 16 22 C -0.18 -3.51 10.78 26.26 0.28 -3.23 16 23 C -0.10 -1.43 6.81 30.52 0.21 -1.22 16 24 C -0.12 -1.53 6.71 31.70 0.21 -1.32 16 25 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 26 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.00 0.14 8.14 -2.39 -0.02 0.13 16 31 H 0.02 0.95 7.75 -2.39 -0.02 0.94 16 32 H 0.38 20.10 7.67 -92.71 -0.71 19.38 16 33 H 0.25 14.89 8.31 -92.70 -0.77 14.11 16 34 H 0.41 7.99 8.60 -92.71 -0.80 7.20 16 35 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.10 2.83 7.31 -2.91 -0.02 2.81 16 38 H 0.13 2.24 8.06 -2.91 -0.02 2.21 16 39 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.08 0.96 7.92 -2.39 -0.02 0.94 16 Total: -1.00 -70.09 344.28 2.34 -67.75 By element: Atomic # 1 Polarization: 32.94 SS G_CDS: -0.51 Total: 32.42 kcal Atomic # 6 Polarization: -15.93 SS G_CDS: 4.52 Total: -11.41 kcal Atomic # 7 Polarization: -114.06 SS G_CDS: -3.65 Total: -117.71 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: -0.04 Total: -19.30 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Total: -70.09 2.34 -67.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268340905.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.922 kcal (2) G-P(sol) polarization free energy of solvation -70.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds