Wall clock time and date at job start Mon Mar 30 2020 19:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47264 * 2 1 4 4 C 1.53005 * 109.47506 * 240.00218 * 2 1 3 5 5 C 1.50704 * 109.46802 * 64.99542 * 4 2 1 6 6 O 1.21285 * 119.99774 * 0.02562 * 5 4 2 7 7 N 1.34776 * 120.00070 * 180.02562 * 5 4 2 8 8 C 1.46496 * 120.00070 * 180.02562 * 7 5 4 9 9 C 1.50705 * 109.46815 * 179.97438 * 8 7 5 10 10 C 1.31002 * 119.99660 * 127.15934 * 9 8 7 11 11 C 1.50702 * 120.00239 * 7.55760 * 10 9 8 12 12 N 1.46493 * 109.47382 * 127.00410 * 11 10 9 13 13 C 1.36939 * 120.00406 * 180.02562 * 12 11 10 14 14 H 1.07995 * 119.99539 * 359.97438 * 13 12 11 15 15 C 1.38814 * 120.00341 * 180.02562 * 13 12 11 16 16 N 1.31618 * 119.99682 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99930 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.46887 * 89.99885 * 17 15 13 19 19 H 1.48502 * 109.46900 * 209.99774 * 17 15 13 20 20 H 1.48494 * 109.47203 * 329.99713 * 17 15 13 21 21 C 1.53000 * 109.47432 * 120.00017 * 2 1 3 22 22 C 1.52994 * 117.50155 * 248.62384 * 21 2 1 23 23 C 1.53001 * 60.00199 * 252.50760 * 22 21 2 24 24 H 1.08994 * 109.46880 * 59.99677 * 1 2 3 25 25 H 1.08999 * 109.46682 * 299.99489 * 1 2 3 26 26 H 1.09002 * 109.46570 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47583 * 184.99694 * 4 2 1 28 28 H 1.08997 * 109.47109 * 305.00138 * 4 2 1 29 29 H 0.96999 * 119.99842 * 0.02562 * 7 5 4 30 30 H 1.08995 * 109.47484 * 300.00154 * 8 7 5 31 31 H 1.09005 * 109.46810 * 60.00435 * 8 7 5 32 32 H 1.07995 * 120.00426 * 307.15808 * 9 8 7 33 33 H 1.07998 * 119.99706 * 187.55933 * 10 9 8 34 34 H 1.08995 * 109.47358 * 247.01226 * 11 10 9 35 35 H 1.09002 * 109.46788 * 7.00941 * 11 10 9 36 36 H 0.97006 * 119.99893 * 0.02562 * 12 11 10 37 37 H 0.96997 * 119.99794 * 179.97438 * 16 15 13 38 38 H 1.08999 * 115.54548 * 34.33329 * 21 2 1 39 39 H 1.08996 * 117.50284 * 359.97438 * 22 21 2 40 40 H 1.09001 * 117.49546 * 145.01989 * 22 21 2 41 41 H 1.08998 * 117.49948 * 252.51044 * 23 22 21 42 42 H 1.08997 * 117.49442 * 107.48518 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.6414 0.0571 -2.4766 6 8 1.0116 1.0875 -2.3632 7 7 1.9845 -0.3917 -3.7002 8 6 1.5973 0.3652 -4.8932 9 6 2.0997 -0.3452 -6.1237 10 6 1.2724 -0.6315 -7.0983 11 6 -0.1389 -0.1038 -7.0683 12 7 -0.4267 0.5928 -8.3245 13 6 -1.6566 1.1599 -8.5268 14 1 -2.4146 1.0932 -7.7604 15 6 -1.9295 1.8194 -9.7173 16 7 -1.0059 1.9002 -10.6515 17 14 -3.6070 2.5936 -9.9929 18 1 -3.5902 3.9971 -9.5078 19 1 -3.9287 2.5748 -11.4426 20 1 -4.6356 1.8245 -9.2476 21 6 2.0401 -0.7212 1.2492 22 6 2.7420 0.1226 2.3151 23 6 3.5551 -0.8281 1.4342 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 3.1264 -0.7994 -1.2057 28 1 1.6055 -1.7197 -1.2953 29 1 2.4878 -1.2159 -3.7909 30 1 0.5111 0.4442 -4.9368 31 1 2.0327 1.3635 -4.8473 32 1 3.1416 -0.6183 -6.2021 33 1 1.6018 -1.2457 -7.9233 34 1 -0.8346 -0.9338 -6.9453 35 1 -0.2498 0.5897 -6.2347 36 1 0.2540 0.6523 -9.0130 37 1 -1.1967 2.3607 -11.4836 38 1 1.4312 -1.5585 1.5901 39 1 2.8408 1.1915 2.1263 40 1 2.5947 -0.1594 3.3576 41 1 3.9429 -1.7355 1.8973 42 1 4.1884 -0.3845 0.6660 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268630065.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:24:30 Heat of formation + Delta-G solvation = -15.546982 kcal Electronic energy + Delta-G solvation = -19365.231653 eV Core-core repulsion = 16345.572468 eV Total energy + Delta-G solvation = -3019.659185 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.96585 -38.81248 -37.90766 -36.09940 -34.40378 -34.02422 -32.36293 -29.46974 -27.67885 -26.25429 -24.42969 -24.22898 -23.14718 -21.59596 -20.66639 -20.01497 -18.97293 -17.80405 -17.51892 -16.90490 -16.52327 -16.21564 -15.80425 -15.62514 -15.27683 -15.08205 -14.77511 -14.22059 -14.18348 -13.92406 -13.81408 -13.32881 -12.93810 -12.86677 -12.74810 -12.39148 -12.23395 -12.18654 -12.10756 -11.91635 -11.75155 -11.66081 -11.10055 -11.03502 -10.87990 -10.73494 -10.25722 -9.89506 -9.01239 -7.99387 -5.29014 1.05605 1.45332 1.47574 1.56081 1.70585 2.39551 2.54932 2.96162 3.33981 3.68868 3.80053 3.86131 4.03687 4.11021 4.14204 4.16334 4.22986 4.34438 4.36803 4.54257 4.62107 4.66245 4.75237 4.85505 4.86106 4.89787 4.92615 5.04171 5.08434 5.18600 5.22071 5.32360 5.39333 5.43717 5.45083 5.56226 5.58465 5.86213 6.23506 6.63915 7.29273 7.34664 8.02908 8.27819 9.24048 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.032356 B = 0.002832 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.168196 B = 9884.922564 C =10515.079612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.043 4.043 3 H 0.055 0.945 4 C -0.124 4.124 5 C 0.501 3.499 6 O -0.585 6.585 7 N -0.712 5.712 8 C 0.140 3.860 9 C -0.157 4.157 10 C -0.137 4.137 11 C 0.161 3.839 12 N -0.742 5.742 13 C -0.251 4.251 14 H 0.073 0.927 15 C -0.074 4.074 16 N -0.968 5.968 17 Si 0.976 3.024 18 H -0.287 1.287 19 H -0.290 1.290 20 H -0.270 1.270 21 C -0.149 4.149 22 C -0.188 4.188 23 C -0.173 4.173 24 H 0.045 0.955 25 H 0.053 0.947 26 H 0.062 0.938 27 H 0.118 0.882 28 H 0.117 0.883 29 H 0.418 0.582 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.151 0.849 33 H 0.125 0.875 34 H 0.024 0.976 35 H 0.031 0.969 36 H 0.376 0.624 37 H 0.253 0.747 38 H 0.114 0.886 39 H 0.085 0.915 40 H 0.102 0.898 41 H 0.107 0.893 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.921 -10.636 24.247 29.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.062 4.062 3 H 0.074 0.926 4 C -0.163 4.163 5 C 0.290 3.710 6 O -0.466 6.466 7 N -0.365 5.365 8 C 0.017 3.983 9 C -0.176 4.176 10 C -0.156 4.156 11 C 0.036 3.964 12 N -0.385 5.385 13 C -0.383 4.383 14 H 0.091 0.909 15 C -0.267 4.267 16 N -0.618 5.618 17 Si 0.804 3.196 18 H -0.214 1.214 19 H -0.217 1.217 20 H -0.194 1.194 21 C -0.167 4.167 22 C -0.225 4.225 23 C -0.210 4.210 24 H 0.064 0.936 25 H 0.072 0.928 26 H 0.081 0.919 27 H 0.136 0.864 28 H 0.135 0.865 29 H 0.255 0.745 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.168 0.832 33 H 0.143 0.857 34 H 0.042 0.958 35 H 0.049 0.951 36 H 0.208 0.792 37 H 0.062 0.938 38 H 0.132 0.868 39 H 0.103 0.897 40 H 0.120 0.880 41 H 0.126 0.874 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 11.291 -9.875 24.376 28.621 hybrid contribution -0.570 0.479 -0.944 1.202 sum 10.721 -9.396 23.432 27.427 Atomic orbital electron populations 1.21882 0.95286 1.01874 1.01635 1.20389 0.95731 0.98109 0.91950 0.92618 1.21759 1.04451 1.00365 0.89775 1.21495 0.78326 0.85466 0.85721 1.90691 1.41673 1.26966 1.87234 1.45911 1.57783 1.28071 1.04732 1.20323 0.99689 0.94825 0.83498 1.22806 1.00059 1.00456 0.94322 1.23036 0.94621 0.98304 0.99621 1.20075 0.93561 0.94188 0.88612 1.42483 1.13756 1.65712 1.16501 1.19630 0.91523 1.27058 1.00074 0.90920 1.25611 1.01929 1.02519 0.96610 1.69813 1.35033 1.49198 1.07741 0.85111 0.79445 0.78295 0.76739 1.21379 1.21657 1.19436 1.22312 0.95503 1.02103 0.96825 1.23073 1.05119 0.97502 0.96844 1.23044 0.93122 1.01957 1.02878 0.93635 0.92763 0.91870 0.86395 0.86498 0.74510 0.92282 0.92388 0.83154 0.85746 0.95815 0.95118 0.79221 0.93798 0.86786 0.89652 0.88001 0.87427 0.88600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 8.92 71.98 0.64 -2.40 16 2 C -0.04 -0.74 2.19 -10.79 -0.02 -0.76 16 3 H 0.06 1.21 7.71 -2.39 -0.02 1.19 16 4 C -0.12 -1.79 5.09 29.85 0.15 -1.64 16 5 C 0.50 11.85 7.55 87.66 0.66 12.51 16 6 O -0.59 -19.88 13.97 -3.04 -0.04 -19.92 16 7 N -0.71 -14.71 5.55 -466.78 -2.59 -17.30 16 8 C 0.14 3.90 5.76 85.64 0.49 4.39 16 9 C -0.16 -3.91 9.63 25.65 0.25 -3.67 16 10 C -0.14 -4.30 9.63 25.65 0.25 -4.05 16 11 C 0.16 6.73 6.35 85.63 0.54 7.27 16 12 N -0.74 -39.37 5.59 -347.19 -1.94 -41.31 16 13 C -0.25 -14.65 9.99 84.03 0.84 -13.81 16 14 H 0.07 4.11 7.83 -2.91 -0.02 4.09 16 15 C -0.07 -4.39 5.50 84.86 0.47 -3.93 16 16 N -0.97 -60.35 13.06 21.65 0.28 -60.06 16 17 Si 0.98 47.36 29.55 68.60 2.03 49.39 16 18 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 19 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 20 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 21 C -0.15 -1.86 5.15 -10.79 -0.06 -1.92 16 22 C -0.19 -2.32 10.18 30.59 0.31 -2.01 16 23 C -0.17 -1.74 9.67 30.60 0.30 -1.44 16 24 H 0.04 1.24 5.95 -2.39 -0.01 1.23 16 25 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.12 1.12 7.12 -2.39 -0.02 1.10 16 28 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.42 5.36 8.46 -92.71 -0.78 4.57 16 30 H 0.06 2.02 5.30 -2.39 -0.01 2.01 16 31 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 32 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 33 H 0.12 3.65 8.06 -2.91 -0.02 3.62 16 34 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.03 1.33 5.29 -2.39 -0.01 1.32 16 36 H 0.38 20.88 7.66 -92.70 -0.71 20.17 16 37 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 38 H 0.11 1.23 8.11 -2.39 -0.02 1.22 16 39 H 0.08 1.19 8.05 -2.39 -0.02 1.18 16 40 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.10 0.94 7.58 -2.39 -0.02 0.92 16 Total: -1.00 -73.19 345.13 2.07 -71.12 By element: Atomic # 1 Polarization: 30.01 SS G_CDS: -0.48 Total: 29.53 kcal Atomic # 6 Polarization: -16.26 SS G_CDS: 4.82 Total: -11.44 kcal Atomic # 7 Polarization: -114.42 SS G_CDS: -4.25 Total: -118.67 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: -0.04 Total: -19.92 kcal Atomic # 14 Polarization: 47.36 SS G_CDS: 2.03 Total: 49.39 kcal Total: -73.19 2.07 -71.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268630065.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.574 kcal (2) G-P(sol) polarization free energy of solvation -73.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds