Wall clock time and date at job start Mon Mar 30 2020 19:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46896 * 2 1 4 4 C 1.53002 * 109.47267 * 119.99584 * 2 1 3 5 5 C 1.50700 * 109.46930 * 295.00223 * 4 2 1 6 6 O 1.21277 * 120.00598 * 359.97438 * 5 4 2 7 7 N 1.34782 * 119.99611 * 180.02562 * 5 4 2 8 8 C 1.46507 * 119.99654 * 180.02562 * 7 5 4 9 9 C 1.50698 * 109.46564 * 179.97438 * 8 7 5 10 10 C 1.31006 * 119.99941 * 127.15299 * 9 8 7 11 11 C 1.50704 * 120.00074 * 7.55726 * 10 9 8 12 12 N 1.46494 * 109.47029 * 127.00085 * 11 10 9 13 13 C 1.36943 * 119.99689 * 179.97438 * 12 11 10 14 14 H 1.08002 * 120.00174 * 0.02562 * 13 12 11 15 15 C 1.38814 * 119.99623 * 180.02562 * 13 12 11 16 16 N 1.31623 * 119.99386 * 180.02562 * 15 13 12 17 17 Si 1.86792 * 120.00277 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.47149 * 90.00030 * 17 15 13 19 19 H 1.48507 * 109.47358 * 209.99912 * 17 15 13 20 20 H 1.48497 * 109.47477 * 329.99951 * 17 15 13 21 21 C 1.52995 * 109.47407 * 239.99672 * 2 1 3 22 22 C 1.53006 * 117.49561 * 59.99727 * 21 2 1 23 23 C 1.53009 * 60.03083 * 107.47976 * 22 21 2 24 24 H 1.09001 * 109.47237 * 300.00340 * 1 2 3 25 25 H 1.08998 * 109.47034 * 60.00490 * 1 2 3 26 26 H 1.09001 * 109.47007 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47081 * 55.00282 * 4 2 1 28 28 H 1.09003 * 109.47135 * 175.00188 * 4 2 1 29 29 H 0.96998 * 119.99886 * 359.97438 * 7 5 4 30 30 H 1.09002 * 109.46621 * 299.98990 * 8 7 5 31 31 H 1.08989 * 109.47585 * 59.99583 * 8 7 5 32 32 H 1.08001 * 120.00455 * 307.14686 * 9 8 7 33 33 H 1.07997 * 119.99925 * 187.54933 * 10 9 8 34 34 H 1.08998 * 109.46778 * 247.00586 * 11 10 9 35 35 H 1.08998 * 109.46499 * 7.00395 * 11 10 9 36 36 H 0.96996 * 120.00462 * 0.02562 * 12 11 10 37 37 H 0.96997 * 119.99615 * 180.02562 * 16 15 13 38 38 H 1.09000 * 115.56306 * 274.31495 * 21 2 1 39 39 H 1.09000 * 117.49902 * 214.97643 * 22 21 2 40 40 H 1.08991 * 117.50068 * 359.97438 * 22 21 2 41 41 H 1.08998 * 117.49677 * 107.50328 * 23 22 21 42 42 H 1.08993 * 117.49848 * 252.51868 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0572 2.4766 6 8 1.0117 1.0875 2.3633 7 7 1.9854 -0.3912 3.7002 8 6 1.5973 0.3653 4.8933 9 6 2.0998 -0.3451 6.1237 10 6 2.8174 0.3035 7.0073 11 6 2.9980 1.7945 6.8834 12 7 2.6230 2.4383 8.1448 13 6 2.7064 3.7994 8.2700 14 1 3.0482 4.3983 7.4388 15 6 2.3516 4.4093 9.4655 16 7 2.4312 5.7176 9.5856 17 14 1.7611 3.3735 10.9034 18 1 2.9236 2.9770 11.7381 19 1 0.8086 4.1634 11.7244 20 1 1.0818 2.1565 10.3909 21 6 2.0401 -0.7213 -1.2491 22 6 1.6357 -0.1496 -2.6096 23 6 3.0743 0.0058 -2.1122 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.6055 -1.7197 1.2953 28 1 3.1264 -0.7993 1.2056 29 1 2.4893 -1.2150 3.7908 30 1 2.0313 1.3641 4.8473 31 1 0.5110 0.4427 4.9371 32 1 1.8683 -1.3887 6.2772 33 1 3.2794 -0.2304 7.8245 34 1 4.0411 2.0166 6.6581 35 1 2.3645 2.1717 6.0806 36 1 2.3164 1.9004 8.8915 37 1 2.1837 6.1438 10.4211 38 1 2.1271 -1.8045 -1.1642 39 1 1.4569 -0.8567 -3.4196 40 1 1.0060 0.7400 -2.6146 41 1 3.8418 -0.5990 -2.5951 42 1 3.3910 0.9976 -1.7897 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268630066.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:24:33 Heat of formation + Delta-G solvation = -12.721575 kcal Electronic energy + Delta-G solvation = -19351.191536 eV Core-core repulsion = 16331.654869 eV Total energy + Delta-G solvation = -3019.536666 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.95332 -38.83025 -38.00289 -36.17579 -34.43043 -34.04761 -32.80528 -29.44475 -27.86343 -26.33108 -24.39185 -24.05395 -23.08740 -21.50285 -20.70848 -20.42940 -19.17219 -17.76195 -17.59618 -16.76066 -16.53688 -16.39510 -15.97444 -15.51720 -15.37517 -14.92313 -14.65390 -14.34582 -14.31215 -14.06612 -13.93581 -13.50848 -13.05539 -12.98529 -12.74865 -12.42044 -12.22378 -12.21416 -12.02333 -11.89052 -11.72932 -11.63939 -11.17831 -11.08052 -10.79869 -10.74784 -10.31145 -9.92227 -9.28739 -8.06396 -5.41626 1.02988 1.36444 1.41511 1.49169 1.70889 2.40697 2.46501 2.94933 3.24495 3.69961 3.74833 3.78215 3.84859 4.04394 4.10008 4.13224 4.27005 4.31787 4.40317 4.52510 4.59782 4.66397 4.75387 4.82842 4.84550 4.88260 4.93732 5.01628 5.07248 5.08977 5.26770 5.30761 5.38448 5.48481 5.53955 5.56708 5.68696 5.86118 6.17314 6.63999 7.03499 7.35294 7.77526 7.99342 9.15174 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.034693 B = 0.002808 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.892173 B = 9968.133103 C =10290.537069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.046 4.046 3 H 0.050 0.950 4 C -0.123 4.123 5 C 0.501 3.499 6 O -0.586 6.586 7 N -0.712 5.712 8 C 0.136 3.864 9 C -0.152 4.152 10 C -0.141 4.141 11 C 0.162 3.838 12 N -0.753 5.753 13 C -0.244 4.244 14 H 0.051 0.949 15 C -0.066 4.066 16 N -0.984 5.984 17 Si 0.964 3.036 18 H -0.273 1.273 19 H -0.294 1.294 20 H -0.249 1.249 21 C -0.144 4.144 22 C -0.183 4.183 23 C -0.185 4.185 24 H 0.045 0.955 25 H 0.051 0.949 26 H 0.065 0.935 27 H 0.124 0.876 28 H 0.116 0.884 29 H 0.418 0.582 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.156 0.844 33 H 0.135 0.865 34 H 0.028 0.972 35 H 0.032 0.968 36 H 0.369 0.631 37 H 0.260 0.740 38 H 0.125 0.875 39 H 0.106 0.894 40 H 0.083 0.917 41 H 0.107 0.893 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.008 -23.880 -20.645 31.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.065 4.065 3 H 0.068 0.932 4 C -0.162 4.162 5 C 0.289 3.711 6 O -0.467 6.467 7 N -0.365 5.365 8 C 0.012 3.988 9 C -0.171 4.171 10 C -0.160 4.160 11 C 0.037 3.963 12 N -0.399 5.399 13 C -0.375 4.375 14 H 0.069 0.931 15 C -0.258 4.258 16 N -0.634 5.634 17 Si 0.790 3.210 18 H -0.198 1.198 19 H -0.221 1.221 20 H -0.174 1.174 21 C -0.162 4.162 22 C -0.220 4.220 23 C -0.222 4.222 24 H 0.064 0.936 25 H 0.070 0.930 26 H 0.084 0.916 27 H 0.142 0.858 28 H 0.135 0.865 29 H 0.256 0.744 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.173 0.827 33 H 0.153 0.847 34 H 0.046 0.954 35 H 0.050 0.950 36 H 0.203 0.797 37 H 0.068 0.932 38 H 0.143 0.857 39 H 0.124 0.876 40 H 0.102 0.898 41 H 0.125 0.875 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.403 -22.937 -20.809 30.972 hybrid contribution -0.144 0.268 1.122 1.162 sum -0.547 -22.669 -19.687 30.030 Atomic orbital electron populations 1.21868 0.95152 1.01951 1.01488 1.20410 0.95823 0.98084 0.92162 0.93158 1.21738 1.04445 1.00446 0.89610 1.21495 0.78322 0.85440 0.85800 1.90699 1.41886 1.26842 1.87229 1.45890 1.57671 1.28220 1.04710 1.20368 0.99539 0.95129 0.83732 1.22856 0.98057 1.01552 0.94658 1.23062 0.98091 0.94241 1.00593 1.20051 0.97608 0.90706 0.87935 1.42598 1.81170 1.03224 1.12950 1.19036 1.36695 0.83405 0.98339 0.93117 1.25636 1.02174 0.96829 1.01140 1.69908 1.56217 1.10039 1.27240 0.85280 0.78273 0.78597 0.78851 1.19835 1.22095 1.17363 1.22339 1.03528 0.99792 0.90526 1.22988 0.98020 1.03403 0.97591 1.23101 0.92860 1.01939 1.04262 0.93623 0.92999 0.91635 0.85814 0.86546 0.74419 0.92568 0.92195 0.82689 0.84698 0.95427 0.95021 0.79726 0.93152 0.85707 0.87552 0.89797 0.87480 0.89876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 8.77 71.98 0.63 -2.21 16 2 C -0.05 -0.79 2.19 -10.79 -0.02 -0.81 16 3 H 0.05 1.15 7.71 -2.38 -0.02 1.13 16 4 C -0.12 -1.68 5.16 29.85 0.15 -1.52 16 5 C 0.50 11.54 7.55 87.66 0.66 12.20 16 6 O -0.59 -19.86 13.97 -3.02 -0.04 -19.91 16 7 N -0.71 -13.82 5.55 -466.78 -2.59 -16.41 16 8 C 0.14 3.55 5.76 85.63 0.49 4.05 16 9 C -0.15 -3.30 9.63 25.64 0.25 -3.06 16 10 C -0.14 -3.86 9.63 25.64 0.25 -3.62 16 11 C 0.16 6.39 6.35 85.64 0.54 6.93 16 12 N -0.75 -36.56 5.40 -347.18 -1.87 -38.44 16 13 C -0.24 -14.59 10.47 84.03 0.88 -13.71 16 14 H 0.05 3.35 8.06 -2.91 -0.02 3.33 16 15 C -0.07 -4.03 5.50 84.86 0.47 -3.57 16 16 N -0.98 -64.84 13.97 21.65 0.30 -64.54 16 17 Si 0.96 46.05 27.74 68.60 1.90 47.95 16 18 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 19 H -0.29 -14.19 7.11 99.48 0.71 -13.49 16 20 H -0.25 -10.66 6.52 99.48 0.65 -10.02 16 21 C -0.14 -1.77 5.15 -10.77 -0.06 -1.83 16 22 C -0.18 -2.34 9.73 30.60 0.30 -2.04 16 23 C -0.18 -2.34 10.18 30.62 0.31 -2.03 16 24 H 0.04 1.18 5.95 -2.39 -0.01 1.17 16 25 H 0.05 0.97 7.29 -2.39 -0.02 0.95 16 26 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.42 4.70 8.46 -92.71 -0.78 3.92 16 30 H 0.06 1.88 5.30 -2.39 -0.01 1.86 16 31 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.16 2.19 8.06 -2.91 -0.02 2.17 16 33 H 0.14 3.17 8.06 -2.91 -0.02 3.15 16 34 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.03 1.34 5.29 -2.39 -0.01 1.33 16 36 H 0.37 16.66 5.52 -92.71 -0.51 16.15 16 37 H 0.26 16.16 8.31 -92.71 -0.77 15.39 16 38 H 0.13 1.05 8.11 -2.39 -0.02 1.03 16 39 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.08 1.24 7.61 -2.39 -0.02 1.23 16 41 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.08 1.25 8.05 -2.39 -0.02 1.23 16 Total: -1.00 -78.15 342.19 2.21 -75.94 By element: Atomic # 1 Polarization: 26.97 SS G_CDS: -0.34 Total: 26.63 kcal Atomic # 6 Polarization: -16.08 SS G_CDS: 4.85 Total: -11.22 kcal Atomic # 7 Polarization: -115.23 SS G_CDS: -4.16 Total: -119.39 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: -0.04 Total: -19.91 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 1.90 Total: 47.95 kcal Total: -78.15 2.21 -75.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268630066.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.214 kcal (2) G-P(sol) polarization free energy of solvation -78.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds