Wall clock time and date at job start Mon Mar 30 2020 19:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46903 * 2 1 4 4 C 1.53006 * 109.46809 * 119.99419 * 2 1 3 5 5 N 1.46500 * 109.47007 * 175.00218 * 4 2 1 6 6 C 1.36939 * 119.99949 * 180.02562 * 5 4 2 7 7 H 1.07990 * 119.99953 * 0.02562 * 6 5 4 8 8 C 1.38813 * 119.99878 * 179.97438 * 6 5 4 9 9 N 1.31626 * 120.00156 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99953 * 179.97438 * 8 6 5 11 11 H 1.48495 * 109.46986 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.46744 * 120.00535 * 10 8 6 13 13 H 1.48498 * 109.47162 * 240.00633 * 10 8 6 14 14 N 1.46493 * 109.47638 * 239.99559 * 2 1 3 15 15 C 1.34784 * 119.99864 * 84.99998 * 14 2 1 16 16 O 1.21283 * 119.99649 * 359.72839 * 15 14 2 17 17 C 1.50694 * 119.99988 * 179.72721 * 15 14 2 18 18 H 1.08996 * 115.56024 * 34.41698 * 17 15 14 19 19 C 1.53089 * 117.50921 * 248.69707 * 17 15 14 20 20 C 1.52552 * 117.51001 * 180.13807 * 17 15 14 21 21 C 1.53878 * 120.82394 * 357.25207 * 20 17 15 22 22 C 1.54992 * 104.06283 * 192.34985 * 21 20 17 23 23 C 1.54926 * 102.81862 * 37.57087 * 22 21 20 24 24 C 1.53477 * 121.09349 * 217.88045 * 20 17 15 25 25 H 1.08994 * 109.47399 * 300.00132 * 1 2 3 26 26 H 1.09003 * 109.46886 * 60.00613 * 1 2 3 27 27 H 1.09003 * 109.46903 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47199 * 295.00431 * 4 2 1 29 29 H 1.08999 * 109.46831 * 55.00659 * 4 2 1 30 30 H 0.97001 * 119.99996 * 359.97438 * 5 4 2 31 31 H 0.96990 * 120.00071 * 179.97438 * 9 8 6 32 32 H 0.97000 * 120.00740 * 264.72691 * 14 2 1 33 33 H 1.08995 * 117.50813 * 359.97438 * 19 17 15 34 34 H 1.08997 * 117.51072 * 145.09003 * 19 17 15 35 35 H 1.08997 * 110.51449 * 310.99652 * 21 20 17 36 36 H 1.08998 * 110.51118 * 73.70786 * 21 20 17 37 37 H 1.08996 * 110.74878 * 279.23937 * 22 21 20 38 38 H 1.08996 * 110.74545 * 155.90116 * 22 21 20 39 39 H 1.09006 * 110.48457 * 203.59506 * 23 22 21 40 40 H 1.08996 * 110.48132 * 80.96492 * 23 22 21 41 41 H 1.09000 * 110.07073 * 263.31581 * 24 20 17 42 42 H 1.08998 * 110.07422 * 24.79257 * 24 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2494 5 7 3.5000 -0.8263 1.1908 6 6 4.1837 -1.4387 2.2070 7 1 3.6466 -1.8445 3.0514 8 6 5.5671 -1.5387 2.1513 9 7 6.2217 -1.0445 1.1218 10 14 6.4998 -2.3734 3.5379 11 1 5.5394 -2.8398 4.5700 12 1 7.2508 -3.5360 2.9996 13 1 7.4507 -1.4085 4.1460 14 7 2.0184 -0.6906 -1.1960 15 6 2.1472 -0.0183 -2.3571 16 8 1.8540 1.1572 -2.4128 17 6 2.6555 -0.7272 -3.5859 18 1 2.3615 -1.7724 -3.6812 19 6 4.0384 -0.3312 -4.1095 20 6 2.7820 0.0889 -4.8685 21 6 2.3430 1.5631 -4.9116 22 6 2.3314 1.9086 -6.4225 23 6 1.7978 0.6057 -7.0689 24 6 2.4406 -0.5228 -6.2341 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.7515 -0.1582 2.1370 29 1 1.6054 -1.7197 1.2953 30 1 3.9823 -0.4628 0.4318 31 1 7.1883 -1.1141 1.0830 32 1 2.2530 -1.6308 -1.1515 33 1 4.5802 0.4424 -3.5654 34 1 4.6537 -1.1157 -4.5498 35 1 1.3461 1.6774 -4.4860 36 1 3.0597 2.1906 -4.3818 37 1 3.3384 2.1304 -6.7756 38 1 1.6586 2.7425 -6.6226 39 1 2.1152 0.5385 -8.1096 40 1 0.7111 0.5616 -6.9970 41 1 3.3481 -0.8785 -6.7221 42 1 1.7361 -1.3452 -6.1101 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268710358.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:25:07 Heat of formation + Delta-G solvation = -20.133878 kcal Electronic energy + Delta-G solvation = -20589.499583 eV Core-core repulsion = 17569.641495 eV Total energy + Delta-G solvation = -3019.858088 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.14188 -38.21008 -36.00340 -34.05168 -33.59191 -31.24721 -29.89679 -28.68102 -25.84788 -25.54142 -24.04623 -22.56434 -20.72325 -20.65393 -19.95128 -18.69420 -17.21153 -16.69479 -15.83266 -15.43441 -15.04542 -14.78428 -14.28970 -13.95968 -13.63416 -13.35505 -13.26365 -12.79991 -12.60248 -12.26494 -12.19483 -12.10063 -11.96860 -11.56942 -11.16210 -10.99649 -10.91683 -10.84074 -10.83031 -10.56027 -10.44751 -10.14295 -10.02374 -9.75932 -9.74651 -9.16441 -8.91773 -8.60540 -6.96303 -5.78828 -3.08533 2.87039 3.41206 3.46887 3.48707 3.49515 3.95006 4.48207 4.56785 4.64688 4.87433 4.92284 5.10780 5.16171 5.28933 5.35013 5.50958 5.54091 5.54965 5.64235 5.68699 5.76387 5.77591 5.86108 5.90407 5.97942 6.04389 6.09156 6.12411 6.17438 6.21198 6.21872 6.41862 6.42451 6.49646 6.56770 6.72923 7.02193 7.67744 7.97746 8.39112 8.66245 9.50991 10.07324 10.42927 11.43578 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.023566 B = 0.004416 C = 0.003915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.864616 B = 6339.539329 C = 7149.585661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.134 3.866 3 H 0.085 0.915 4 C 0.144 3.856 5 N -0.732 5.732 6 C -0.242 4.242 7 H 0.071 0.929 8 C -0.012 4.012 9 N -0.930 5.930 10 Si 0.907 3.093 11 H -0.280 1.280 12 H -0.292 1.292 13 H -0.291 1.291 14 N -0.708 5.708 15 C 0.545 3.455 16 O -0.546 6.546 17 C -0.180 4.180 18 H 0.118 0.882 19 C -0.136 4.136 20 C -0.098 4.098 21 C -0.075 4.075 22 C -0.128 4.128 23 C -0.122 4.122 24 C -0.089 4.089 25 H 0.063 0.937 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.033 0.967 29 H 0.024 0.976 30 H 0.386 0.614 31 H 0.255 0.745 32 H 0.403 0.597 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.081 0.919 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.829 0.892 -14.287 17.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.029 3.971 3 H 0.103 0.897 4 C 0.016 3.984 5 N -0.377 5.377 6 C -0.374 4.374 7 H 0.089 0.911 8 C -0.208 4.208 9 N -0.579 5.579 10 Si 0.738 3.262 11 H -0.206 1.206 12 H -0.219 1.219 13 H -0.219 1.219 14 N -0.358 5.358 15 C 0.331 3.669 16 O -0.424 6.424 17 C -0.201 4.201 18 H 0.136 0.864 19 C -0.173 4.173 20 C -0.098 4.098 21 C -0.112 4.112 22 C -0.166 4.166 23 C -0.159 4.159 24 C -0.126 4.126 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.050 0.950 29 H 0.041 0.959 30 H 0.220 0.780 31 H 0.065 0.935 32 H 0.238 0.762 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.099 0.901 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.015 1.646 -14.138 17.404 hybrid contribution 0.935 -1.017 0.736 1.565 sum -9.081 0.629 -13.402 16.201 Atomic orbital electron populations 1.22093 0.95636 1.01755 1.02038 1.21213 0.93236 0.97953 0.84691 0.89677 1.20981 0.86861 0.96922 0.93628 1.42369 0.99750 1.70273 1.25269 1.19269 0.89460 1.29404 0.99226 0.91111 1.24749 0.96427 1.01567 0.98069 1.69680 1.07158 1.50810 1.30224 0.86123 0.79914 0.78743 0.81427 1.20560 1.21872 1.21853 1.45952 1.66250 1.14516 1.09095 1.19576 0.77049 0.86605 0.83664 1.90641 1.50868 1.15913 1.84964 1.22262 1.03556 1.00245 0.94005 0.86396 1.23043 0.89183 1.03323 1.01753 1.21766 1.01023 0.96278 0.90766 1.21841 1.02733 0.92074 0.94540 1.22572 1.00746 0.96997 0.96288 1.22331 1.00112 0.94969 0.98499 1.21665 1.00413 0.97703 0.92826 0.91766 0.92483 0.92674 0.94964 0.95862 0.77959 0.93550 0.76199 0.87912 0.87962 0.90066 0.91416 0.91737 0.91804 0.91883 0.91740 0.91387 0.91643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.21 9.48 37.16 0.35 -1.85 16 2 C 0.13 2.30 2.73 -67.93 -0.19 2.12 16 3 H 0.09 1.66 7.58 -51.93 -0.39 1.27 16 4 C 0.14 2.85 5.82 -4.04 -0.02 2.82 16 5 N -0.73 -18.30 5.43 -59.91 -0.33 -18.63 16 6 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 7 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 8 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 9 N -0.93 -27.98 13.06 55.49 0.72 -27.26 16 10 Si 0.91 22.26 29.55 -169.99 -5.02 17.23 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 13 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 14 N -0.71 -11.71 4.52 -53.81 -0.24 -11.95 16 15 C 0.54 9.14 7.57 -10.98 -0.08 9.06 16 16 O -0.55 -10.44 13.37 5.56 0.07 -10.37 16 17 C -0.18 -2.48 6.05 -91.96 -0.56 -3.04 16 18 H 0.12 1.40 8.14 -51.93 -0.42 0.97 16 19 C -0.14 -1.83 9.95 -26.85 -0.27 -2.10 16 20 C -0.10 -1.24 2.45 -154.20 -0.38 -1.61 16 21 C -0.07 -1.00 4.77 -25.22 -0.12 -1.12 16 22 C -0.13 -1.35 6.91 -24.66 -0.17 -1.52 16 23 C -0.12 -1.14 6.84 -24.99 -0.17 -1.31 16 24 C -0.09 -0.90 6.55 -25.76 -0.17 -1.07 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.39 10.32 7.33 -40.82 -0.30 10.02 16 31 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 32 H 0.40 6.40 8.60 -40.82 -0.35 6.05 16 33 H 0.10 1.57 8.14 -51.93 -0.42 1.15 16 34 H 0.10 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.08 1.22 6.97 -51.93 -0.36 0.86 16 36 H 0.07 1.01 8.01 -51.93 -0.42 0.60 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 340.48 15.07 5.13 5.13 Total: -1.00 -30.98 340.48 -8.97 -39.95 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: -7.29 Total: 12.83 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: -2.02 Total: -6.94 kcal Atomic # 7 Polarization: -58.00 SS G_CDS: 0.16 Total: -57.84 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.07 Total: -10.37 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.98 -8.97 -39.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268710358.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.814 kcal (2) G-P(sol) polarization free energy of solvation -30.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds