Wall clock time and date at job start Mon Mar 30 2020 19:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46903 * 2 1 4 4 C 1.53006 * 109.46809 * 119.99419 * 2 1 3 5 5 N 1.46500 * 109.47007 * 175.00218 * 4 2 1 6 6 C 1.36939 * 119.99949 * 180.02562 * 5 4 2 7 7 H 1.07990 * 119.99953 * 0.02562 * 6 5 4 8 8 C 1.38813 * 119.99878 * 179.97438 * 6 5 4 9 9 N 1.31626 * 120.00156 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99953 * 179.97438 * 8 6 5 11 11 H 1.48495 * 109.46986 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.46744 * 120.00535 * 10 8 6 13 13 H 1.48498 * 109.47162 * 240.00633 * 10 8 6 14 14 N 1.46493 * 109.47638 * 239.99559 * 2 1 3 15 15 C 1.34784 * 119.99864 * 84.99998 * 14 2 1 16 16 O 1.21283 * 119.99649 * 359.72839 * 15 14 2 17 17 C 1.50694 * 119.99988 * 179.72721 * 15 14 2 18 18 H 1.08996 * 115.56024 * 34.41698 * 17 15 14 19 19 C 1.53089 * 117.50921 * 248.69707 * 17 15 14 20 20 C 1.52552 * 117.51001 * 180.13807 * 17 15 14 21 21 C 1.53878 * 120.82394 * 357.25207 * 20 17 15 22 22 C 1.54992 * 104.06283 * 192.34985 * 21 20 17 23 23 C 1.54926 * 102.81862 * 37.57087 * 22 21 20 24 24 C 1.53477 * 121.09349 * 217.88045 * 20 17 15 25 25 H 1.08994 * 109.47399 * 300.00132 * 1 2 3 26 26 H 1.09003 * 109.46886 * 60.00613 * 1 2 3 27 27 H 1.09003 * 109.46903 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47199 * 295.00431 * 4 2 1 29 29 H 1.08999 * 109.46831 * 55.00659 * 4 2 1 30 30 H 0.97001 * 119.99996 * 359.97438 * 5 4 2 31 31 H 0.96990 * 120.00071 * 179.97438 * 9 8 6 32 32 H 0.97000 * 120.00740 * 264.72691 * 14 2 1 33 33 H 1.08995 * 117.50813 * 359.97438 * 19 17 15 34 34 H 1.08997 * 117.51072 * 145.09003 * 19 17 15 35 35 H 1.08997 * 110.51449 * 310.99652 * 21 20 17 36 36 H 1.08998 * 110.51118 * 73.70786 * 21 20 17 37 37 H 1.08996 * 110.74878 * 279.23937 * 22 21 20 38 38 H 1.08996 * 110.74545 * 155.90116 * 22 21 20 39 39 H 1.09006 * 110.48457 * 203.59506 * 23 22 21 40 40 H 1.08996 * 110.48132 * 80.96492 * 23 22 21 41 41 H 1.09000 * 110.07073 * 263.31581 * 24 20 17 42 42 H 1.08998 * 110.07422 * 24.79257 * 24 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2494 5 7 3.5000 -0.8263 1.1908 6 6 4.1837 -1.4387 2.2070 7 1 3.6466 -1.8445 3.0514 8 6 5.5671 -1.5387 2.1513 9 7 6.2217 -1.0445 1.1218 10 14 6.4998 -2.3734 3.5379 11 1 5.5394 -2.8398 4.5700 12 1 7.2508 -3.5360 2.9996 13 1 7.4507 -1.4085 4.1460 14 7 2.0184 -0.6906 -1.1960 15 6 2.1472 -0.0183 -2.3571 16 8 1.8540 1.1572 -2.4128 17 6 2.6555 -0.7272 -3.5859 18 1 2.3615 -1.7724 -3.6812 19 6 4.0384 -0.3312 -4.1095 20 6 2.7820 0.0889 -4.8685 21 6 2.3430 1.5631 -4.9116 22 6 2.3314 1.9086 -6.4225 23 6 1.7978 0.6057 -7.0689 24 6 2.4406 -0.5228 -6.2341 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.7515 -0.1582 2.1370 29 1 1.6054 -1.7197 1.2953 30 1 3.9823 -0.4628 0.4318 31 1 7.1883 -1.1141 1.0830 32 1 2.2530 -1.6308 -1.1515 33 1 4.5802 0.4424 -3.5654 34 1 4.6537 -1.1157 -4.5498 35 1 1.3461 1.6774 -4.4860 36 1 3.0597 2.1906 -4.3818 37 1 3.3384 2.1304 -6.7756 38 1 1.6586 2.7425 -6.6226 39 1 2.1152 0.5385 -8.1096 40 1 0.7111 0.5616 -6.9970 41 1 3.3481 -0.8785 -6.7221 42 1 1.7361 -1.3452 -6.1101 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268710358.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:25:07 Heat of formation + Delta-G solvation = -39.170463 kcal Electronic energy + Delta-G solvation = -20590.325071 eV Core-core repulsion = 17569.641495 eV Total energy + Delta-G solvation = -3020.683576 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.35819 -39.38407 -37.53221 -35.43446 -35.06098 -33.00222 -31.50235 -29.57543 -27.45545 -26.66782 -25.28866 -24.40355 -22.05882 -21.55970 -21.28740 -19.78537 -19.15500 -18.03215 -17.21897 -16.70034 -16.35294 -16.07769 -15.62576 -15.44855 -15.24441 -15.00285 -14.33709 -14.08523 -13.82471 -13.68215 -13.54482 -13.33872 -13.10420 -13.01921 -12.82379 -12.63540 -12.11611 -11.98499 -11.94274 -11.91754 -11.74385 -11.69780 -11.38504 -11.21893 -11.01211 -10.87216 -10.38456 -9.99137 -9.02619 -7.95300 -5.25339 1.47721 1.48500 1.57427 1.58538 2.21320 2.55423 2.84517 3.38806 3.48691 3.68596 3.76950 3.86502 3.96673 4.00124 4.12738 4.29255 4.30357 4.34499 4.51368 4.62745 4.76569 4.77555 4.80359 4.85706 4.89600 4.92415 4.93594 5.02960 5.08878 5.12140 5.13588 5.24256 5.29226 5.36627 5.47211 5.49722 5.52651 5.63829 6.25414 6.63945 7.32466 7.32894 8.05732 8.29858 9.27996 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.023566 B = 0.004416 C = 0.003915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.864616 B = 6339.539329 C = 7149.585661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.141 3.859 3 H 0.055 0.945 4 C 0.146 3.854 5 N -0.744 5.744 6 C -0.246 4.246 7 H 0.079 0.921 8 C -0.073 4.073 9 N -0.968 5.968 10 Si 0.974 3.026 11 H -0.265 1.265 12 H -0.292 1.292 13 H -0.297 1.297 14 N -0.706 5.706 15 C 0.537 3.463 16 O -0.576 6.576 17 C -0.187 4.187 18 H 0.144 0.856 19 C -0.142 4.142 20 C -0.090 4.090 21 C -0.078 4.078 22 C -0.124 4.124 23 C -0.117 4.117 24 C -0.085 4.085 25 H 0.079 0.921 26 H 0.051 0.949 27 H 0.072 0.928 28 H 0.037 0.963 29 H 0.040 0.960 30 H 0.374 0.626 31 H 0.250 0.750 32 H 0.408 0.592 33 H 0.074 0.926 34 H 0.125 0.875 35 H 0.060 0.940 36 H 0.039 0.961 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.084 0.916 40 H 0.067 0.933 41 H 0.082 0.918 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.861 -0.647 -15.004 18.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.036 3.964 3 H 0.074 0.926 4 C 0.019 3.981 5 N -0.387 5.387 6 C -0.377 4.377 7 H 0.097 0.903 8 C -0.265 4.265 9 N -0.619 5.619 10 Si 0.803 3.197 11 H -0.189 1.189 12 H -0.219 1.219 13 H -0.224 1.224 14 N -0.356 5.356 15 C 0.325 3.675 16 O -0.456 6.456 17 C -0.207 4.207 18 H 0.162 0.838 19 C -0.179 4.179 20 C -0.090 4.090 21 C -0.115 4.115 22 C -0.162 4.162 23 C -0.155 4.155 24 C -0.123 4.123 25 H 0.097 0.903 26 H 0.070 0.930 27 H 0.091 0.909 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.206 0.794 31 H 0.059 0.941 32 H 0.243 0.757 33 H 0.093 0.907 34 H 0.143 0.857 35 H 0.079 0.921 36 H 0.058 0.942 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.103 0.897 40 H 0.086 0.914 41 H 0.101 0.899 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.097 0.089 -14.836 18.527 hybrid contribution 1.203 -0.468 1.004 1.635 sum -9.894 -0.378 -13.832 17.010 Atomic orbital electron populations 1.21985 0.92712 1.03060 1.02522 1.21065 0.95313 0.95968 0.84102 0.92643 1.21126 0.84073 0.97979 0.94931 1.42552 1.01855 1.69990 1.24341 1.19683 0.89946 1.28410 0.99686 0.90301 1.25562 0.97483 1.02966 1.00513 1.69841 1.06995 1.52729 1.32301 0.85072 0.78467 0.77325 0.78856 1.18893 1.21920 1.22429 1.45955 1.66147 1.14625 1.08897 1.20146 0.76478 0.86408 0.84496 1.90628 1.52162 1.17299 1.85530 1.22351 1.03724 1.01442 0.93229 0.83846 1.23054 0.89380 1.03376 1.02094 1.21909 0.99644 0.95776 0.91718 1.21781 1.00672 0.92618 0.96474 1.22557 1.01475 0.98250 0.93894 1.22342 1.00263 0.93495 0.99371 1.21720 1.01483 0.98117 0.90945 0.90250 0.93037 0.90882 0.94542 0.94177 0.79418 0.94086 0.75701 0.90748 0.85696 0.92103 0.94208 0.91184 0.91096 0.89734 0.91420 0.89908 0.90444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.86 9.48 71.98 0.68 -3.18 16 2 C 0.14 4.84 2.73 44.99 0.12 4.96 16 3 H 0.06 2.24 7.58 -2.39 -0.02 2.22 16 4 C 0.15 5.64 5.82 86.38 0.50 6.14 16 5 N -0.74 -37.39 5.43 -343.45 -1.87 -39.26 16 6 C -0.25 -13.51 9.99 84.03 0.84 -12.67 16 7 H 0.08 4.13 7.83 -2.92 -0.02 4.11 16 8 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 9 N -0.97 -59.20 13.06 21.65 0.28 -58.91 16 10 Si 0.97 45.74 29.55 68.60 2.03 47.76 16 11 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 12 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 13 H -0.30 -14.10 7.11 99.48 0.71 -13.40 16 14 N -0.71 -23.44 4.52 -442.53 -2.00 -25.44 16 15 C 0.54 18.41 7.57 87.65 0.66 19.08 16 16 O -0.58 -23.04 13.37 -3.04 -0.04 -23.08 16 17 C -0.19 -5.08 6.05 -11.66 -0.07 -5.15 16 18 H 0.14 3.12 8.14 -2.39 -0.02 3.10 16 19 C -0.14 -3.83 9.95 30.52 0.30 -3.53 16 20 C -0.09 -2.21 2.45 -51.98 -0.13 -2.34 16 21 C -0.08 -2.14 4.77 31.57 0.15 -1.99 16 22 C -0.12 -2.48 6.91 31.93 0.22 -2.26 16 23 C -0.12 -1.89 6.84 31.72 0.22 -1.68 16 24 C -0.09 -1.51 6.55 31.23 0.20 -1.30 16 25 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 26 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.37 20.46 7.33 -92.71 -0.68 19.78 16 31 H 0.25 14.84 8.31 -92.72 -0.77 14.07 16 32 H 0.41 12.77 8.60 -92.71 -0.80 11.98 16 33 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 34 H 0.12 2.77 8.14 -2.39 -0.02 2.75 16 35 H 0.06 1.91 6.97 -2.39 -0.02 1.89 16 36 H 0.04 1.27 8.01 -2.39 -0.02 1.26 16 37 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 40 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.08 1.25 8.14 -2.39 -0.02 1.24 16 42 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -67.41 340.48 2.10 -65.30 By element: Atomic # 1 Polarization: 41.72 SS G_CDS: -0.48 Total: 41.24 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: 4.18 Total: -7.61 kcal Atomic # 7 Polarization: -120.03 SS G_CDS: -3.58 Total: -123.62 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: -0.04 Total: -23.08 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.76 kcal Total: -67.41 2.10 -65.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268710358.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.133 kcal (2) G-P(sol) polarization free energy of solvation -67.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds