Wall clock time and date at job start Mon Mar 30 2020 19:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47506 * 2 1 4 4 C 1.52999 * 109.46938 * 239.99886 * 2 1 3 5 5 N 1.46498 * 109.47207 * 184.99867 * 4 2 1 6 6 C 1.46501 * 120.00059 * 90.00439 * 5 4 2 7 7 C 1.36935 * 120.00038 * 270.00354 * 5 4 2 8 8 H 1.08000 * 120.00535 * 22.07637 * 7 5 4 9 9 C 1.38820 * 120.00022 * 202.07611 * 7 5 4 10 10 N 1.31621 * 119.99649 * 13.94606 * 9 7 5 11 11 Si 1.86798 * 120.00141 * 193.94412 * 9 7 5 12 12 H 1.48506 * 109.47106 * 59.99957 * 11 9 7 13 13 H 1.48499 * 109.47229 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.47096 * 300.00065 * 11 9 7 15 15 N 1.46498 * 109.47242 * 120.00264 * 2 1 3 16 16 C 1.34780 * 119.99970 * 275.00060 * 15 2 1 17 17 O 1.21285 * 119.99816 * 359.97438 * 16 15 2 18 18 C 1.50699 * 119.99900 * 179.72590 * 16 15 2 19 19 H 1.08996 * 115.55087 * 34.33125 * 18 16 15 20 20 C 1.53002 * 117.49604 * 248.61494 * 18 16 15 21 21 C 1.53000 * 117.49731 * 179.97438 * 18 16 15 22 22 H 1.09002 * 117.49671 * 0.02562 * 21 18 16 23 23 C 1.52992 * 117.50083 * 215.00214 * 21 18 16 24 24 C 1.53002 * 117.49845 * 128.75151 * 23 21 18 25 25 C 1.53001 * 117.49959 * 60.09059 * 23 21 18 26 26 H 1.09003 * 109.47146 * 299.99758 * 1 2 3 27 27 H 1.09002 * 109.47514 * 59.99819 * 1 2 3 28 28 H 1.09005 * 109.47257 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47595 * 305.00231 * 4 2 1 30 30 H 1.09004 * 109.47093 * 65.00094 * 4 2 1 31 31 H 1.08993 * 109.47342 * 95.30088 * 6 5 4 32 32 H 1.09006 * 109.47228 * 215.30677 * 6 5 4 33 33 H 1.09005 * 109.46930 * 335.29948 * 6 5 4 34 34 H 0.97003 * 119.99075 * 180.02562 * 10 9 7 35 35 H 0.97001 * 120.00590 * 94.99902 * 15 2 1 36 36 H 1.08998 * 117.49830 * 0.02562 * 20 18 16 37 37 H 1.09000 * 117.49430 * 145.01900 * 20 18 16 38 38 H 1.09000 * 115.55006 * 274.41868 * 23 21 18 39 39 H 1.09001 * 117.50095 * 359.97438 * 24 23 21 40 40 H 1.09007 * 117.49940 * 145.02360 * 24 23 21 41 41 H 1.09002 * 117.49897 * 214.98208 * 25 23 21 42 42 H 1.08996 * 117.49649 * 359.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 7 3.4999 -0.8264 -1.1906 6 6 4.1258 -1.9920 -0.5613 7 6 4.2797 0.1648 -1.7241 8 1 3.8744 1.1566 -1.8600 9 6 5.5913 -0.1051 -2.0901 10 7 6.0045 -1.3511 -2.1865 11 14 6.7697 1.2999 -2.4459 12 1 6.9028 2.1525 -1.2373 13 1 8.0997 0.7499 -2.8120 14 1 6.2437 2.1143 -3.5707 15 7 2.0183 -0.6907 1.1961 16 6 2.1470 -0.0183 2.3571 17 8 1.8590 1.1586 2.4115 18 6 2.6435 -0.7303 3.5891 19 1 3.3851 -1.5099 3.4147 20 6 1.6478 -0.9442 4.7309 21 6 2.7684 0.0880 4.8758 22 1 2.4910 1.1412 4.8314 23 6 3.9240 -0.2510 5.8193 24 6 4.8177 0.9006 6.2841 25 6 5.3461 -0.1179 5.2709 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.6053 -1.7198 -1.2952 30 1 1.7515 -0.1583 -2.1370 31 1 4.3680 -2.7309 -1.3251 32 1 5.0386 -1.6835 -0.0517 33 1 3.4362 -2.4288 0.1612 34 1 6.9211 -1.5396 -2.4420 35 1 2.2490 -1.6318 1.1526 36 1 0.6336 -0.5704 4.5908 37 1 1.7340 -1.8650 5.3078 38 1 3.7313 -1.0562 6.5283 39 1 4.5825 1.8998 5.9173 40 1 5.2133 0.8528 7.2987 41 1 6.0891 -0.8353 5.6192 42 1 5.4583 0.2108 4.2377 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268749649.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:25:38 Heat of formation + Delta-G solvation = 30.390211 kcal Electronic energy + Delta-G solvation = -20823.654234 eV Core-core repulsion = 17805.987035 eV Total energy + Delta-G solvation = -3017.667199 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.80640 -37.98161 -36.37724 -34.79677 -34.00131 -31.27251 -30.23957 -26.19638 -25.65961 -24.89464 -23.36716 -22.39913 -21.69890 -20.42540 -19.97843 -19.42033 -17.03711 -16.79942 -15.82678 -15.36509 -15.02037 -14.86837 -14.21804 -14.00191 -13.67407 -13.28672 -12.98441 -12.84333 -12.32437 -12.08271 -11.99166 -11.65175 -11.47598 -11.39331 -11.30251 -10.93432 -10.86811 -10.80048 -10.64578 -10.60257 -10.18263 -10.05397 -10.00293 -9.85890 -9.68569 -9.31088 -8.62592 -8.41575 -6.74764 -5.72423 -3.17892 2.87589 3.40533 3.45405 3.48239 3.51074 3.77058 4.01343 4.51165 4.58558 4.78081 4.86161 5.02991 5.06817 5.27324 5.30963 5.39731 5.42935 5.47378 5.61488 5.63279 5.68107 5.81399 5.89307 5.95964 5.98715 6.09743 6.09975 6.15658 6.20335 6.30238 6.46005 6.54898 6.61577 6.81367 7.12458 7.31330 7.67358 7.81180 8.06280 8.38645 8.74656 9.23234 9.86106 10.33768 11.32297 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.014978 B = 0.006027 C = 0.004844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.963717 B = 4644.887461 C = 5778.786353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.116 3.884 3 H 0.083 0.917 4 C 0.143 3.857 5 N -0.598 5.598 6 C 0.168 3.832 7 C -0.253 4.253 8 H 0.067 0.933 9 C 0.003 3.997 10 N -0.909 5.909 11 Si 0.903 3.097 12 H -0.285 1.285 13 H -0.291 1.291 14 H -0.283 1.283 15 N -0.699 5.699 16 C 0.542 3.458 17 O -0.554 6.554 18 C -0.181 4.181 19 H 0.122 0.878 20 C -0.147 4.147 21 C -0.091 4.091 22 H 0.117 0.883 23 C -0.127 4.127 24 C -0.176 4.176 25 C -0.176 4.176 26 H 0.051 0.949 27 H 0.061 0.939 28 H 0.050 0.950 29 H 0.040 0.960 30 H 0.062 0.938 31 H 0.031 0.969 32 H 0.040 0.960 33 H -0.008 1.008 34 H 0.252 0.748 35 H 0.397 0.603 36 H 0.097 0.903 37 H 0.101 0.899 38 H 0.106 0.894 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.322 -2.147 13.542 15.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.008 3.992 3 H 0.101 0.899 4 C 0.015 3.985 5 N -0.320 5.320 6 C 0.023 3.977 7 C -0.382 4.382 8 H 0.085 0.915 9 C -0.195 4.195 10 N -0.554 5.554 11 Si 0.733 3.267 12 H -0.211 1.211 13 H -0.216 1.216 14 H -0.209 1.209 15 N -0.349 5.349 16 C 0.328 3.672 17 O -0.433 6.433 18 C -0.202 4.202 19 H 0.140 0.860 20 C -0.185 4.185 21 C -0.109 4.109 22 H 0.135 0.865 23 C -0.145 4.145 24 C -0.213 4.213 25 C -0.213 4.213 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.059 0.941 30 H 0.081 0.919 31 H 0.049 0.951 32 H 0.059 0.941 33 H 0.011 0.989 34 H 0.062 0.938 35 H 0.233 0.767 36 H 0.116 0.884 37 H 0.120 0.880 38 H 0.124 0.876 39 H 0.114 0.886 40 H 0.111 0.889 41 H 0.112 0.888 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -7.331 -1.401 13.476 15.405 hybrid contribution 0.968 0.202 -0.300 1.033 sum -6.363 -1.199 13.176 14.681 Atomic orbital electron populations 1.22120 0.96607 1.01239 1.01693 1.21910 0.92082 0.98904 0.86254 0.89909 1.21052 0.85872 0.97511 0.94100 1.43806 0.99074 1.22774 1.66363 1.20814 0.94063 0.89071 0.93770 1.19122 0.93864 0.89833 1.35391 0.91550 1.24962 0.98687 0.96062 0.99834 1.70055 1.16734 1.16717 1.51909 0.86361 0.80381 0.81756 0.78239 1.21116 1.21646 1.20898 1.45956 1.65886 1.13868 1.09170 1.19529 0.77195 0.86629 0.83889 1.90639 1.51386 1.15982 1.85299 1.22335 1.04367 1.04233 0.89244 0.85981 1.23007 0.95181 1.00833 0.99443 1.21773 0.96421 0.97945 0.94798 0.86473 1.21751 0.90501 1.01145 1.01112 1.22988 1.03845 0.95150 0.99302 1.23021 0.95930 1.02473 0.99864 0.93010 0.91978 0.93056 0.94144 0.91938 0.95068 0.94081 0.98930 0.93758 0.76708 0.88408 0.88046 0.87603 0.88632 0.88927 0.88821 0.88239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.33 9.48 37.16 0.35 -1.98 16 2 C 0.12 2.10 2.88 -67.93 -0.20 1.91 16 3 H 0.08 1.78 7.58 -51.93 -0.39 1.39 16 4 C 0.14 2.81 5.29 -4.04 -0.02 2.79 16 5 N -0.60 -14.56 2.78 -181.11 -0.50 -15.06 16 6 C 0.17 3.92 8.52 59.85 0.51 4.43 16 7 C -0.25 -6.95 9.66 -15.06 -0.15 -7.09 16 8 H 0.07 1.82 7.87 -52.49 -0.41 1.41 16 9 C 0.00 0.07 5.08 -17.43 -0.09 -0.02 16 10 N -0.91 -26.36 10.71 55.49 0.59 -25.77 16 11 Si 0.90 22.28 29.58 -169.99 -5.03 17.25 16 12 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 13 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 14 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 15 N -0.70 -12.00 4.52 -53.81 -0.24 -12.25 16 16 C 0.54 9.59 7.58 -10.98 -0.08 9.51 16 17 O -0.55 -11.70 15.92 5.55 0.09 -11.61 16 18 C -0.18 -2.51 5.83 -91.77 -0.54 -3.04 16 19 H 0.12 1.60 8.14 -51.93 -0.42 1.18 16 20 C -0.15 -1.64 9.96 -26.71 -0.27 -1.91 16 21 C -0.09 -1.16 5.38 -90.60 -0.49 -1.65 16 22 H 0.12 1.71 7.67 -51.93 -0.40 1.31 16 23 C -0.13 -1.39 5.87 -90.62 -0.53 -1.92 16 24 C -0.18 -1.87 10.25 -26.69 -0.27 -2.14 16 25 C -0.18 -2.05 10.18 -26.69 -0.27 -2.32 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.04 0.72 8.07 -51.93 -0.42 0.30 16 30 H 0.06 1.23 8.04 -51.93 -0.42 0.82 16 31 H 0.03 0.80 7.35 -51.93 -0.38 0.42 16 32 H 0.04 1.05 7.32 -51.93 -0.38 0.67 16 33 H -0.01 -0.15 5.77 -51.93 -0.30 -0.45 16 34 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 35 H 0.40 6.28 6.21 -40.82 -0.25 6.03 16 36 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 42 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 344.52 15.07 5.19 5.19 Total: -1.00 -31.33 344.52 -9.08 -40.41 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -7.14 Total: 5.27 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: -2.04 Total: -3.44 kcal Atomic # 7 Polarization: -52.92 SS G_CDS: -0.15 Total: -53.08 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: 0.09 Total: -11.61 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.03 Total: 17.25 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.33 -9.08 -40.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268749649.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.796 kcal (2) G-P(sol) polarization free energy of solvation -31.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds