Wall clock time and date at job start Mon Mar 30 2020 19:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47506 * 2 1 4 4 C 1.52999 * 109.46938 * 239.99886 * 2 1 3 5 5 N 1.46498 * 109.47207 * 184.99867 * 4 2 1 6 6 C 1.46501 * 120.00059 * 90.00439 * 5 4 2 7 7 C 1.36935 * 120.00038 * 270.00354 * 5 4 2 8 8 H 1.08000 * 120.00535 * 22.07637 * 7 5 4 9 9 C 1.38820 * 120.00022 * 202.07611 * 7 5 4 10 10 N 1.31621 * 119.99649 * 13.94606 * 9 7 5 11 11 Si 1.86798 * 120.00141 * 193.94412 * 9 7 5 12 12 H 1.48506 * 109.47106 * 59.99957 * 11 9 7 13 13 H 1.48499 * 109.47229 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.47096 * 300.00065 * 11 9 7 15 15 N 1.46498 * 109.47242 * 120.00264 * 2 1 3 16 16 C 1.34780 * 119.99970 * 275.00060 * 15 2 1 17 17 O 1.21285 * 119.99816 * 359.97438 * 16 15 2 18 18 C 1.50699 * 119.99900 * 179.72590 * 16 15 2 19 19 H 1.08996 * 115.55087 * 34.33125 * 18 16 15 20 20 C 1.53002 * 117.49604 * 248.61494 * 18 16 15 21 21 C 1.53000 * 117.49731 * 179.97438 * 18 16 15 22 22 H 1.09002 * 117.49671 * 0.02562 * 21 18 16 23 23 C 1.52992 * 117.50083 * 215.00214 * 21 18 16 24 24 C 1.53002 * 117.49845 * 128.75151 * 23 21 18 25 25 C 1.53001 * 117.49959 * 60.09059 * 23 21 18 26 26 H 1.09003 * 109.47146 * 299.99758 * 1 2 3 27 27 H 1.09002 * 109.47514 * 59.99819 * 1 2 3 28 28 H 1.09005 * 109.47257 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47595 * 305.00231 * 4 2 1 30 30 H 1.09004 * 109.47093 * 65.00094 * 4 2 1 31 31 H 1.08993 * 109.47342 * 95.30088 * 6 5 4 32 32 H 1.09006 * 109.47228 * 215.30677 * 6 5 4 33 33 H 1.09005 * 109.46930 * 335.29948 * 6 5 4 34 34 H 0.97003 * 119.99075 * 180.02562 * 10 9 7 35 35 H 0.97001 * 120.00590 * 94.99902 * 15 2 1 36 36 H 1.08998 * 117.49830 * 0.02562 * 20 18 16 37 37 H 1.09000 * 117.49430 * 145.01900 * 20 18 16 38 38 H 1.09000 * 115.55006 * 274.41868 * 23 21 18 39 39 H 1.09001 * 117.50095 * 359.97438 * 24 23 21 40 40 H 1.09007 * 117.49940 * 145.02360 * 24 23 21 41 41 H 1.09002 * 117.49897 * 214.98208 * 25 23 21 42 42 H 1.08996 * 117.49649 * 359.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 7 3.4999 -0.8264 -1.1906 6 6 4.1258 -1.9920 -0.5613 7 6 4.2797 0.1648 -1.7241 8 1 3.8744 1.1566 -1.8600 9 6 5.5913 -0.1051 -2.0901 10 7 6.0045 -1.3511 -2.1865 11 14 6.7697 1.2999 -2.4459 12 1 6.9028 2.1525 -1.2373 13 1 8.0997 0.7499 -2.8120 14 1 6.2437 2.1143 -3.5707 15 7 2.0183 -0.6907 1.1961 16 6 2.1470 -0.0183 2.3571 17 8 1.8590 1.1586 2.4115 18 6 2.6435 -0.7303 3.5891 19 1 3.3851 -1.5099 3.4147 20 6 1.6478 -0.9442 4.7309 21 6 2.7684 0.0880 4.8758 22 1 2.4910 1.1412 4.8314 23 6 3.9240 -0.2510 5.8193 24 6 4.8177 0.9006 6.2841 25 6 5.3461 -0.1179 5.2709 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.6053 -1.7198 -1.2952 30 1 1.7515 -0.1583 -2.1370 31 1 4.3680 -2.7309 -1.3251 32 1 5.0386 -1.6835 -0.0517 33 1 3.4362 -2.4288 0.1612 34 1 6.9211 -1.5396 -2.4420 35 1 2.2490 -1.6318 1.1526 36 1 0.6336 -0.5704 4.5908 37 1 1.7340 -1.8650 5.3078 38 1 3.7313 -1.0562 6.5283 39 1 4.5825 1.8998 5.9173 40 1 5.2133 0.8528 7.2987 41 1 6.0891 -0.8353 5.6192 42 1 5.4583 0.2108 4.2377 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268749649.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:25:38 Heat of formation + Delta-G solvation = 12.262062 kcal Electronic energy + Delta-G solvation = -20824.440330 eV Core-core repulsion = 17805.987035 eV Total energy + Delta-G solvation = -3018.453295 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.11396 -39.11950 -37.96981 -35.95846 -35.63374 -33.11856 -31.83791 -28.03363 -27.45445 -26.10129 -24.35212 -23.47808 -23.22311 -21.85827 -21.28262 -20.57285 -18.80140 -18.30858 -17.09126 -16.94715 -16.52490 -16.09022 -15.67931 -15.37745 -15.28499 -15.05806 -14.51783 -14.03506 -13.72956 -13.50140 -13.32816 -13.24123 -12.83258 -12.75412 -12.54850 -12.50560 -12.33211 -12.32549 -12.04733 -11.88732 -11.86059 -11.83955 -11.75614 -11.01099 -10.81323 -10.66937 -10.52076 -9.95528 -8.76394 -7.84872 -5.31644 1.41125 1.43849 1.49924 1.57882 2.27823 2.47863 2.70450 3.04924 3.27115 3.60350 3.68467 3.77959 3.83475 4.04589 4.13374 4.16472 4.32072 4.35240 4.37748 4.48440 4.50944 4.73986 4.76284 4.78931 4.80464 4.91806 4.97781 5.00967 5.02296 5.16269 5.21828 5.26110 5.27366 5.34954 5.40203 5.60060 5.69206 5.73805 6.30720 6.68171 7.14374 7.36629 7.86511 8.26925 9.16666 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.014978 B = 0.006027 C = 0.004844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.963717 B = 4644.887461 C = 5778.786353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.124 3.876 3 H 0.041 0.959 4 C 0.143 3.857 5 N -0.613 5.613 6 C 0.182 3.818 7 C -0.260 4.260 8 H 0.059 0.941 9 C -0.047 4.047 10 N -0.933 5.933 11 Si 0.958 3.042 12 H -0.289 1.289 13 H -0.289 1.289 14 H -0.275 1.275 15 N -0.696 5.696 16 C 0.534 3.466 17 O -0.597 6.597 18 C -0.196 4.196 19 H 0.133 0.867 20 C -0.115 4.115 21 C -0.100 4.100 22 H 0.091 0.909 23 C -0.118 4.118 24 C -0.174 4.174 25 C -0.188 4.188 26 H 0.042 0.958 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.006 0.994 32 H 0.009 0.991 33 H 0.037 0.963 34 H 0.248 0.752 35 H 0.405 0.595 36 H 0.096 0.904 37 H 0.137 0.863 38 H 0.134 0.866 39 H 0.081 0.919 40 H 0.117 0.883 41 H 0.111 0.889 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.391 -3.387 15.055 17.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.016 3.984 3 H 0.059 0.941 4 C 0.017 3.983 5 N -0.336 5.336 6 C 0.037 3.963 7 C -0.390 4.390 8 H 0.077 0.923 9 C -0.243 4.243 10 N -0.580 5.580 11 Si 0.786 3.214 12 H -0.216 1.216 13 H -0.215 1.215 14 H -0.200 1.200 15 N -0.346 5.346 16 C 0.322 3.678 17 O -0.479 6.479 18 C -0.217 4.217 19 H 0.150 0.850 20 C -0.152 4.152 21 C -0.118 4.118 22 H 0.109 0.891 23 C -0.136 4.136 24 C -0.210 4.210 25 C -0.225 4.225 26 H 0.061 0.939 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.025 0.975 32 H 0.028 0.972 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.242 0.758 36 H 0.114 0.886 37 H 0.155 0.845 38 H 0.152 0.848 39 H 0.099 0.901 40 H 0.135 0.865 41 H 0.129 0.871 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.433 -2.653 14.984 17.398 hybrid contribution 1.235 0.628 -0.771 1.586 sum -7.198 -2.025 14.213 16.060 Atomic orbital electron populations 1.21996 0.93514 1.02901 1.01963 1.21645 0.94341 0.96377 0.86012 0.94079 1.21217 0.83298 0.99156 0.94677 1.44013 1.00913 1.22280 1.66364 1.20569 0.93973 0.88205 0.93563 1.19347 0.94585 0.90449 1.34660 0.92289 1.25599 1.00050 0.97997 1.00606 1.70190 1.16623 1.18012 1.53132 0.85489 0.78613 0.79362 0.77890 1.21633 1.21516 1.20044 1.45936 1.65674 1.14122 1.08859 1.20212 0.76343 0.86284 0.84952 1.90616 1.53321 1.17906 1.86041 1.22295 1.06333 1.04871 0.88169 0.84957 1.23149 0.94153 1.01225 0.96693 1.21775 0.98334 0.97102 0.94619 0.89102 1.21833 0.89088 1.01890 1.00775 1.23066 1.03504 0.94350 1.00122 1.22988 0.97277 1.03681 0.98577 0.93859 0.90633 0.90601 0.91307 0.92162 0.97548 0.97240 0.94430 0.94240 0.75768 0.88558 0.84543 0.84783 0.90056 0.86495 0.87097 0.91342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.02 9.48 71.98 0.68 -3.34 16 2 C 0.12 4.42 2.88 44.99 0.13 4.55 16 3 H 0.04 1.82 7.58 -2.39 -0.02 1.80 16 4 C 0.14 5.48 5.29 86.38 0.46 5.93 16 5 N -0.61 -29.84 2.78 -726.92 -2.02 -31.86 16 6 C 0.18 8.48 8.52 127.77 1.09 9.57 16 7 C -0.26 -14.50 9.66 84.04 0.81 -13.69 16 8 H 0.06 3.31 7.87 -2.91 -0.02 3.29 16 9 C -0.05 -2.68 5.08 84.86 0.43 -2.25 16 10 N -0.93 -54.97 10.71 21.65 0.23 -54.74 16 11 Si 0.96 46.53 29.58 68.60 2.03 48.56 16 12 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 13 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 14 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 15 N -0.70 -23.31 4.52 -442.54 -2.00 -25.31 16 16 C 0.53 18.90 7.58 87.66 0.66 19.57 16 17 O -0.60 -25.95 15.92 -3.05 -0.05 -25.99 16 18 C -0.20 -5.19 5.83 -11.54 -0.07 -5.26 16 19 H 0.13 3.23 8.14 -2.39 -0.02 3.21 16 20 C -0.12 -2.24 9.96 30.61 0.30 -1.93 16 21 C -0.10 -2.44 5.38 -10.78 -0.06 -2.49 16 22 H 0.09 2.72 7.67 -2.39 -0.02 2.70 16 23 C -0.12 -2.34 5.87 -10.80 -0.06 -2.40 16 24 C -0.17 -3.46 10.25 30.62 0.31 -3.15 16 25 C -0.19 -4.22 10.18 30.62 0.31 -3.91 16 26 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 29 H 0.07 2.27 8.07 -2.39 -0.02 2.25 16 30 H 0.06 2.33 8.04 -2.38 -0.02 2.31 16 31 H 0.01 0.32 7.35 -2.39 -0.02 0.31 16 32 H 0.01 0.47 7.32 -2.38 -0.02 0.45 16 33 H 0.04 1.38 5.77 -2.38 -0.01 1.36 16 34 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 35 H 0.41 12.02 6.21 -92.71 -0.58 11.44 16 36 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.14 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.13 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.12 1.76 8.14 -2.38 -0.02 1.74 16 41 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -69.95 344.52 3.61 -66.34 By element: Atomic # 1 Polarization: 21.40 SS G_CDS: 0.41 Total: 21.82 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: 5.01 Total: 1.19 kcal Atomic # 7 Polarization: -108.12 SS G_CDS: -3.79 Total: -111.91 kcal Atomic # 8 Polarization: -25.95 SS G_CDS: -0.05 Total: -25.99 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.56 kcal Total: -69.95 3.61 -66.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268749649.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.598 kcal (2) G-P(sol) polarization free energy of solvation -69.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds