Wall clock time and date at job start Mon Mar 30 2020 19:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47183 * 2 1 4 4 C 1.52998 * 109.47230 * 119.99844 * 2 1 3 5 5 N 1.46498 * 109.47509 * 175.00052 * 4 2 1 6 6 C 1.46496 * 120.00103 * 89.99504 * 5 4 2 7 7 C 1.36946 * 119.99569 * 270.00297 * 5 4 2 8 8 H 1.07997 * 119.99758 * 141.73167 * 7 5 4 9 9 C 1.38812 * 120.00085 * 321.72182 * 7 5 4 10 10 N 1.31617 * 119.99686 * 157.45329 * 9 7 5 11 11 Si 1.86799 * 120.00137 * 337.45635 * 9 7 5 12 12 H 1.48504 * 109.47197 * 95.65925 * 11 9 7 13 13 H 1.48501 * 109.47360 * 215.66344 * 11 9 7 14 14 H 1.48505 * 109.47015 * 335.66440 * 11 9 7 15 15 N 1.46502 * 109.47033 * 239.99530 * 2 1 3 16 16 C 1.34778 * 119.99547 * 85.00107 * 15 2 1 17 17 O 1.21280 * 120.00053 * 0.02562 * 16 15 2 18 18 C 1.50701 * 119.99743 * 180.02562 * 16 15 2 19 19 H 1.08997 * 115.55436 * 34.32674 * 18 16 15 20 20 C 1.53003 * 117.49629 * 248.62308 * 18 16 15 21 21 C 1.53005 * 117.49943 * 180.02562 * 18 16 15 22 22 H 1.09003 * 117.49370 * 359.97438 * 21 18 16 23 23 C 1.52998 * 117.49885 * 215.00002 * 21 18 16 24 24 C 1.52997 * 117.49863 * 128.74519 * 23 21 18 25 25 C 1.53004 * 117.49798 * 60.08660 * 23 21 18 26 26 H 1.08995 * 109.47319 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46681 * 300.00134 * 1 2 3 28 28 H 1.08997 * 109.47033 * 59.99776 * 1 2 3 29 29 H 1.09003 * 109.47372 * 54.99896 * 4 2 1 30 30 H 1.09001 * 109.47423 * 295.00238 * 4 2 1 31 31 H 1.09003 * 109.46598 * 85.64330 * 6 5 4 32 32 H 1.09000 * 109.47183 * 205.63370 * 6 5 4 33 33 H 1.08995 * 109.47246 * 325.64156 * 6 5 4 34 34 H 0.97001 * 119.99864 * 180.02562 * 10 9 7 35 35 H 0.96997 * 120.00465 * 264.99996 * 15 2 1 36 36 H 1.09000 * 117.50296 * 359.97438 * 20 18 16 37 37 H 1.08999 * 117.50151 * 145.01777 * 20 18 16 38 38 H 1.08996 * 115.54993 * 274.41691 * 23 21 18 39 39 H 1.09010 * 117.49709 * 0.02562 * 24 23 21 40 40 H 1.08998 * 117.50294 * 145.01681 * 24 23 21 41 41 H 1.08991 * 117.49775 * 214.98059 * 25 23 21 42 42 H 1.08999 * 117.49647 * 359.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5001 -0.8264 1.1906 6 6 4.3343 0.2341 1.7612 7 6 4.0850 -1.9159 0.6023 8 1 4.9789 -1.7942 0.0087 9 6 3.5289 -3.1768 0.7691 10 7 3.7828 -4.1287 -0.1037 11 14 2.4204 -3.5227 2.2323 12 1 1.0012 -3.3544 1.8289 13 1 2.6399 -4.9144 2.7017 14 1 2.7388 -2.5741 3.3297 15 7 2.0184 -0.6907 -1.1961 16 6 2.1470 -0.0184 -2.3571 17 8 1.8591 1.1585 -2.4115 18 6 2.6488 -0.7290 -3.5877 19 1 2.3510 -1.7732 -3.6819 20 6 4.0307 -0.3377 -4.1153 21 6 2.7734 0.0892 -4.8746 22 1 2.4920 1.1414 -4.8311 23 6 2.4698 -0.6208 -6.1954 24 6 1.4787 0.0516 -7.1474 25 6 1.0677 -1.2057 -6.3770 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.6054 -1.7198 1.2952 30 1 1.7517 -0.1583 2.1370 31 1 4.4782 0.0499 2.8259 32 1 5.3024 0.2441 1.2602 33 1 3.8433 1.1972 1.6222 34 1 3.3940 -5.0097 0.0127 35 1 2.2491 -1.6318 -1.1526 36 1 4.5767 0.4340 -3.5726 37 1 4.6423 -1.1246 -4.5566 38 1 3.3035 -1.1651 -6.6389 39 1 1.0432 1.0001 -6.8329 40 1 1.6601 -0.0506 -8.2173 41 1 0.9790 -2.1345 -6.9404 42 1 0.3617 -1.0850 -5.5553 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268749650.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:25:42 Heat of formation + Delta-G solvation = 29.490246 kcal Electronic energy + Delta-G solvation = -21128.283940 eV Core-core repulsion = 18110.577716 eV Total energy + Delta-G solvation = -3017.706225 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.58937 -37.88249 -36.49903 -34.64431 -33.77804 -31.72101 -30.36476 -26.69857 -25.67040 -24.74323 -23.15408 -22.36118 -21.49100 -20.55951 -19.78087 -19.24305 -17.17637 -16.50104 -15.89945 -15.56055 -14.91641 -14.67478 -14.23956 -14.02854 -13.42187 -13.32230 -13.14047 -12.79077 -12.45082 -12.13186 -11.95670 -11.89494 -11.61131 -11.57890 -11.28330 -11.17546 -10.89868 -10.82208 -10.72658 -10.66613 -10.44872 -9.90791 -9.86669 -9.64586 -9.50532 -9.11678 -8.62694 -8.24675 -6.87909 -6.11072 -3.50815 3.12051 3.21629 3.40258 3.45670 3.63237 4.00397 4.21730 4.42065 4.75812 4.91384 4.92998 5.02488 5.23511 5.24991 5.30466 5.46305 5.54346 5.58489 5.65172 5.65671 5.85237 5.90383 5.91029 6.03379 6.05022 6.14404 6.20025 6.21931 6.27494 6.31949 6.35335 6.47710 6.49691 6.58888 6.69041 6.79478 7.32193 7.94827 8.28244 8.41733 8.87995 9.01458 9.59692 10.03988 11.03494 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.021068 B = 0.005795 C = 0.005423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.704362 B = 4830.502492 C = 5161.713900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.124 3.876 3 H 0.076 0.924 4 C 0.127 3.873 5 N -0.610 5.610 6 C 0.125 3.875 7 C -0.262 4.262 8 H 0.079 0.921 9 C 0.033 3.967 10 N -0.896 5.896 11 Si 0.871 3.129 12 H -0.285 1.285 13 H -0.300 1.300 14 H -0.270 1.270 15 N -0.686 5.686 16 C 0.542 3.458 17 O -0.571 6.571 18 C -0.173 4.173 19 H 0.121 0.879 20 C -0.137 4.137 21 C -0.099 4.099 22 H 0.115 0.885 23 C -0.122 4.122 24 C -0.177 4.177 25 C -0.177 4.177 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.007 0.993 32 H 0.045 0.955 33 H 0.026 0.974 34 H 0.264 0.736 35 H 0.417 0.583 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.107 0.893 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.412 5.585 -7.646 10.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.016 3.984 3 H 0.094 0.906 4 C 0.000 4.000 5 N -0.334 5.334 6 C -0.020 4.020 7 C -0.390 4.390 8 H 0.097 0.903 9 C -0.167 4.167 10 N -0.538 5.538 11 Si 0.701 3.299 12 H -0.213 1.213 13 H -0.228 1.228 14 H -0.195 1.195 15 N -0.336 5.336 16 C 0.328 3.672 17 O -0.452 6.452 18 C -0.194 4.194 19 H 0.139 0.861 20 C -0.175 4.175 21 C -0.118 4.118 22 H 0.133 0.867 23 C -0.140 4.140 24 C -0.214 4.214 25 C -0.214 4.214 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.025 0.975 32 H 0.063 0.937 33 H 0.045 0.955 34 H 0.074 0.926 35 H 0.255 0.745 36 H 0.116 0.884 37 H 0.120 0.880 38 H 0.125 0.875 39 H 0.112 0.888 40 H 0.110 0.890 41 H 0.111 0.889 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.590 6.217 -7.669 10.887 hybrid contribution -0.531 -0.955 0.978 1.466 sum -5.120 5.262 -6.691 9.933 Atomic orbital electron populations 1.22167 0.96678 1.01651 1.01646 1.21622 0.92267 0.97749 0.86781 0.90599 1.21527 0.85609 0.98820 0.94006 1.44005 0.99615 1.22018 1.67767 1.21076 0.95041 0.90308 0.95581 1.18786 1.12015 0.83720 1.24517 0.90330 1.25498 0.98547 0.95508 0.97190 1.69864 1.46077 1.03982 1.33834 0.87022 0.79929 0.76819 0.86099 1.21331 1.22835 1.19481 1.45883 1.64341 1.15335 1.08020 1.19541 0.77146 0.86422 0.84071 1.90592 1.52624 1.16308 1.85657 1.22233 1.03023 1.00708 0.93448 0.86088 1.22934 0.89615 1.03098 1.01848 1.21776 1.02001 0.99121 0.88886 0.86711 1.21767 0.93447 1.02994 0.95809 1.22976 1.03857 0.97294 0.97300 1.22970 0.98140 0.97156 1.03154 0.92788 0.92236 0.92579 0.92403 0.92801 0.97487 0.93659 0.95478 0.92612 0.74483 0.88414 0.87970 0.87536 0.88767 0.89012 0.88929 0.88634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.71 9.48 37.16 0.35 -2.36 16 2 C 0.12 2.40 2.88 -67.93 -0.20 2.20 16 3 H 0.08 1.55 7.58 -51.93 -0.39 1.15 16 4 C 0.13 2.62 4.18 -4.04 -0.02 2.60 16 5 N -0.61 -13.89 2.36 -181.12 -0.43 -14.32 16 6 C 0.13 2.49 10.70 59.84 0.64 3.13 16 7 C -0.26 -6.75 8.31 -15.06 -0.13 -6.88 16 8 H 0.08 2.24 8.06 -52.49 -0.42 1.81 16 9 C 0.03 0.88 5.01 -17.43 -0.09 0.79 16 10 N -0.90 -24.90 13.97 55.49 0.78 -24.13 16 11 Si 0.87 20.97 25.09 -169.99 -4.26 16.71 16 12 H -0.29 -6.62 6.68 56.52 0.38 -6.24 16 13 H -0.30 -7.44 7.11 56.52 0.40 -7.04 16 14 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 15 N -0.69 -13.95 4.49 -53.80 -0.24 -14.19 16 16 C 0.54 10.74 7.58 -10.98 -0.08 10.66 16 17 O -0.57 -12.51 15.92 5.56 0.09 -12.42 16 18 C -0.17 -2.91 5.84 -91.77 -0.54 -3.45 16 19 H 0.12 1.98 8.14 -51.93 -0.42 1.56 16 20 C -0.14 -2.09 9.95 -26.75 -0.27 -2.35 16 21 C -0.10 -1.44 5.38 -90.64 -0.49 -1.93 16 22 H 0.11 1.81 7.67 -51.93 -0.40 1.41 16 23 C -0.12 -1.47 5.87 -90.62 -0.53 -2.01 16 24 C -0.18 -1.89 10.25 -26.69 -0.27 -2.17 16 25 C -0.18 -2.03 10.18 -26.69 -0.27 -2.30 16 26 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.06 1.29 3.39 -51.93 -0.18 1.11 16 30 H 0.05 1.00 8.07 -51.93 -0.42 0.58 16 31 H 0.01 0.14 8.14 -51.93 -0.42 -0.29 16 32 H 0.04 0.89 8.00 -51.93 -0.42 0.48 16 33 H 0.03 0.48 8.10 -51.93 -0.42 0.06 16 34 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 35 H 0.42 9.16 7.17 -40.82 -0.29 8.87 16 36 H 0.10 1.56 8.14 -51.93 -0.42 1.13 16 37 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 38 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.09 1.03 8.14 -51.92 -0.42 0.60 16 40 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 342.39 15.07 5.16 5.16 Total: -1.00 -28.66 342.39 -7.96 -36.63 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: -7.17 Total: 10.63 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: -1.88 Total: -4.05 kcal Atomic # 7 Polarization: -52.75 SS G_CDS: 0.11 Total: -52.64 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: 0.09 Total: -12.42 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.26 Total: 16.71 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -28.66 -7.96 -36.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268749650.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.116 kcal (2) G-P(sol) polarization free energy of solvation -28.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds