Wall clock time and date at job start Mon Mar 30 2020 19:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47183 * 2 1 4 4 C 1.52998 * 109.47230 * 119.99844 * 2 1 3 5 5 N 1.46498 * 109.47509 * 175.00052 * 4 2 1 6 6 C 1.46496 * 120.00103 * 89.99504 * 5 4 2 7 7 C 1.36946 * 119.99569 * 270.00297 * 5 4 2 8 8 H 1.07997 * 119.99758 * 141.73167 * 7 5 4 9 9 C 1.38812 * 120.00085 * 321.72182 * 7 5 4 10 10 N 1.31617 * 119.99686 * 157.45329 * 9 7 5 11 11 Si 1.86799 * 120.00137 * 337.45635 * 9 7 5 12 12 H 1.48504 * 109.47197 * 95.65925 * 11 9 7 13 13 H 1.48501 * 109.47360 * 215.66344 * 11 9 7 14 14 H 1.48505 * 109.47015 * 335.66440 * 11 9 7 15 15 N 1.46502 * 109.47033 * 239.99530 * 2 1 3 16 16 C 1.34778 * 119.99547 * 85.00107 * 15 2 1 17 17 O 1.21280 * 120.00053 * 0.02562 * 16 15 2 18 18 C 1.50701 * 119.99743 * 180.02562 * 16 15 2 19 19 H 1.08997 * 115.55436 * 34.32674 * 18 16 15 20 20 C 1.53003 * 117.49629 * 248.62308 * 18 16 15 21 21 C 1.53005 * 117.49943 * 180.02562 * 18 16 15 22 22 H 1.09003 * 117.49370 * 359.97438 * 21 18 16 23 23 C 1.52998 * 117.49885 * 215.00002 * 21 18 16 24 24 C 1.52997 * 117.49863 * 128.74519 * 23 21 18 25 25 C 1.53004 * 117.49798 * 60.08660 * 23 21 18 26 26 H 1.08995 * 109.47319 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46681 * 300.00134 * 1 2 3 28 28 H 1.08997 * 109.47033 * 59.99776 * 1 2 3 29 29 H 1.09003 * 109.47372 * 54.99896 * 4 2 1 30 30 H 1.09001 * 109.47423 * 295.00238 * 4 2 1 31 31 H 1.09003 * 109.46598 * 85.64330 * 6 5 4 32 32 H 1.09000 * 109.47183 * 205.63370 * 6 5 4 33 33 H 1.08995 * 109.47246 * 325.64156 * 6 5 4 34 34 H 0.97001 * 119.99864 * 180.02562 * 10 9 7 35 35 H 0.96997 * 120.00465 * 264.99996 * 15 2 1 36 36 H 1.09000 * 117.50296 * 359.97438 * 20 18 16 37 37 H 1.08999 * 117.50151 * 145.01777 * 20 18 16 38 38 H 1.08996 * 115.54993 * 274.41691 * 23 21 18 39 39 H 1.09010 * 117.49709 * 0.02562 * 24 23 21 40 40 H 1.08998 * 117.50294 * 145.01681 * 24 23 21 41 41 H 1.08991 * 117.49775 * 214.98059 * 25 23 21 42 42 H 1.08999 * 117.49647 * 359.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5001 -0.8264 1.1906 6 6 4.3343 0.2341 1.7612 7 6 4.0850 -1.9159 0.6023 8 1 4.9789 -1.7942 0.0087 9 6 3.5289 -3.1768 0.7691 10 7 3.7828 -4.1287 -0.1037 11 14 2.4204 -3.5227 2.2323 12 1 1.0012 -3.3544 1.8289 13 1 2.6399 -4.9144 2.7017 14 1 2.7388 -2.5741 3.3297 15 7 2.0184 -0.6907 -1.1961 16 6 2.1470 -0.0184 -2.3571 17 8 1.8591 1.1585 -2.4115 18 6 2.6488 -0.7290 -3.5877 19 1 2.3510 -1.7732 -3.6819 20 6 4.0307 -0.3377 -4.1153 21 6 2.7734 0.0892 -4.8746 22 1 2.4920 1.1414 -4.8311 23 6 2.4698 -0.6208 -6.1954 24 6 1.4787 0.0516 -7.1474 25 6 1.0677 -1.2057 -6.3770 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.6054 -1.7198 1.2952 30 1 1.7517 -0.1583 2.1370 31 1 4.4782 0.0499 2.8259 32 1 5.3024 0.2441 1.2602 33 1 3.8433 1.1972 1.6222 34 1 3.3940 -5.0097 0.0127 35 1 2.2491 -1.6318 -1.1526 36 1 4.5767 0.4340 -3.5726 37 1 4.6423 -1.1246 -4.5566 38 1 3.3035 -1.1651 -6.6389 39 1 1.0432 1.0001 -6.8329 40 1 1.6601 -0.0506 -8.2173 41 1 0.9790 -2.1345 -6.9404 42 1 0.3617 -1.0850 -5.5553 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268749650.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:25:41 Heat of formation + Delta-G solvation = 13.450329 kcal Electronic energy + Delta-G solvation = -21128.979483 eV Core-core repulsion = 18110.577716 eV Total energy + Delta-G solvation = -3018.401768 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.06684 -39.15264 -38.07956 -35.87080 -35.43408 -33.68305 -31.92211 -28.34121 -27.45467 -26.07020 -24.35126 -23.30452 -23.16042 -22.08619 -21.15310 -20.58232 -18.95305 -18.09405 -17.57680 -16.76390 -16.51618 -16.00127 -15.69465 -15.61494 -15.01781 -14.95275 -14.83660 -14.15399 -14.02228 -13.73133 -13.49624 -13.32084 -13.13933 -12.83138 -12.61761 -12.50223 -12.44284 -12.28986 -12.19486 -11.85297 -11.80662 -11.76631 -11.49568 -10.98421 -10.78417 -10.61449 -10.49173 -9.85936 -8.74271 -8.15883 -5.53296 1.31246 1.45625 1.54208 1.61745 2.30540 2.43356 2.78479 3.05540 3.08494 3.42790 3.65067 3.83227 3.87937 3.99415 4.11499 4.17635 4.24312 4.31158 4.39232 4.44029 4.52518 4.57341 4.68987 4.74170 4.80512 4.81735 4.81980 4.97062 5.03139 5.04359 5.07263 5.10026 5.21572 5.27965 5.30191 5.35628 5.73544 5.96816 6.20739 6.76697 6.98609 7.39175 7.62976 8.08370 9.01870 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.021068 B = 0.005795 C = 0.005423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.704362 B = 4830.502492 C = 5161.713900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.123 3.877 3 H 0.066 0.934 4 C 0.126 3.874 5 N -0.623 5.623 6 C 0.124 3.876 7 C -0.247 4.247 8 H 0.041 0.959 9 C -0.005 4.005 10 N -0.932 5.932 11 Si 0.925 3.075 12 H -0.270 1.270 13 H -0.312 1.312 14 H -0.266 1.266 15 N -0.692 5.692 16 C 0.538 3.462 17 O -0.595 6.595 18 C -0.192 4.192 19 H 0.123 0.877 20 C -0.135 4.135 21 C -0.078 4.078 22 H 0.101 0.899 23 C -0.133 4.133 24 C -0.165 4.165 25 C -0.180 4.180 26 H 0.054 0.946 27 H 0.087 0.913 28 H 0.049 0.951 29 H 0.045 0.955 30 H 0.082 0.918 31 H 0.018 0.982 32 H 0.037 0.963 33 H 0.048 0.952 34 H 0.263 0.737 35 H 0.409 0.591 36 H 0.086 0.914 37 H 0.120 0.880 38 H 0.122 0.878 39 H 0.089 0.911 40 H 0.115 0.885 41 H 0.109 0.891 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.458 6.069 -7.717 11.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.016 3.984 3 H 0.084 0.916 4 C 0.000 4.000 5 N -0.347 5.347 6 C -0.020 4.020 7 C -0.377 4.377 8 H 0.059 0.941 9 C -0.203 4.203 10 N -0.576 5.576 11 Si 0.754 3.246 12 H -0.197 1.197 13 H -0.241 1.241 14 H -0.191 1.191 15 N -0.340 5.340 16 C 0.326 3.674 17 O -0.479 6.479 18 C -0.213 4.213 19 H 0.141 0.859 20 C -0.172 4.172 21 C -0.097 4.097 22 H 0.119 0.881 23 C -0.151 4.151 24 C -0.202 4.202 25 C -0.217 4.217 26 H 0.073 0.927 27 H 0.106 0.894 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.100 0.900 31 H 0.037 0.963 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.245 0.755 36 H 0.104 0.896 37 H 0.139 0.861 38 H 0.140 0.860 39 H 0.108 0.892 40 H 0.133 0.867 41 H 0.128 0.872 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.653 6.737 -7.722 11.704 hybrid contribution -0.150 -1.030 0.984 1.433 sum -5.803 5.707 -6.738 10.566 Atomic orbital electron populations 1.22086 0.94360 1.02056 1.02733 1.21632 0.94066 0.96712 0.86011 0.91623 1.21622 0.84108 0.98668 0.95630 1.44135 1.00899 1.21737 1.67914 1.21144 0.94607 0.90418 0.95865 1.18500 1.10748 0.84914 1.23571 0.94141 1.25874 1.00296 0.95313 0.98811 1.69960 1.48001 1.04358 1.35243 0.86156 0.79401 0.75800 0.83231 1.19689 1.24076 1.19100 1.46006 1.64432 1.14869 1.08699 1.19989 0.76521 0.86206 0.84691 1.90564 1.53811 1.17343 1.86140 1.22236 1.04608 1.00954 0.93522 0.85860 1.23005 0.89363 1.03228 1.01647 1.21748 1.00550 0.98224 0.89177 0.88117 1.21799 0.94455 1.03899 0.94939 1.23067 1.02168 0.96657 0.98272 1.23010 0.97091 0.98454 1.03144 0.92670 0.89424 0.93228 0.93671 0.90005 0.96328 0.94391 0.93309 0.92759 0.75496 0.89594 0.86144 0.85996 0.89244 0.86680 0.87249 0.90139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.82 9.48 71.98 0.68 -4.14 16 2 C 0.12 4.63 2.88 44.99 0.13 4.76 16 3 H 0.07 2.61 7.58 -2.39 -0.02 2.59 16 4 C 0.13 4.93 4.18 86.38 0.36 5.29 16 5 N -0.62 -27.73 2.36 -726.95 -1.71 -29.44 16 6 C 0.12 4.76 10.70 127.77 1.37 6.13 16 7 C -0.25 -12.88 8.31 84.03 0.70 -12.18 16 8 H 0.04 2.40 8.06 -2.91 -0.02 2.37 16 9 C -0.01 -0.27 5.01 84.86 0.43 0.15 16 10 N -0.93 -52.55 13.97 21.65 0.30 -52.25 16 11 Si 0.92 42.69 25.09 68.60 1.72 44.41 16 12 H -0.27 -11.70 6.68 99.48 0.66 -11.03 16 13 H -0.31 -14.92 7.11 99.48 0.71 -14.21 16 14 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 15 N -0.69 -28.27 4.49 -442.53 -1.99 -30.25 16 16 C 0.54 21.63 7.58 87.66 0.66 22.29 16 17 O -0.60 -26.39 15.92 -3.03 -0.05 -26.44 16 18 C -0.19 -6.53 5.84 -11.54 -0.07 -6.60 16 19 H 0.12 4.09 8.14 -2.39 -0.02 4.07 16 20 C -0.13 -4.09 9.95 30.58 0.30 -3.79 16 21 C -0.08 -2.25 5.38 -10.81 -0.06 -2.30 16 22 H 0.10 3.19 7.67 -2.39 -0.02 3.17 16 23 C -0.13 -2.99 5.87 -10.79 -0.06 -3.06 16 24 C -0.16 -3.17 10.25 30.62 0.31 -2.85 16 25 C -0.18 -3.84 10.18 30.62 0.31 -3.52 16 26 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 28 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.05 1.91 3.39 -2.39 -0.01 1.90 16 30 H 0.08 2.76 8.07 -2.39 -0.02 2.74 16 31 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.04 1.48 8.00 -2.39 -0.02 1.46 16 33 H 0.05 1.64 8.10 -2.39 -0.02 1.62 16 34 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 35 H 0.41 18.22 7.17 -92.71 -0.66 17.55 16 36 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 37 H 0.12 3.18 8.14 -2.39 -0.02 3.16 16 38 H 0.12 2.40 8.14 -2.39 -0.02 2.38 16 39 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 40 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -61.23 342.39 3.63 -57.60 By element: Atomic # 1 Polarization: 35.91 SS G_CDS: 0.28 Total: 36.19 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: 5.07 Total: 0.18 kcal Atomic # 7 Polarization: -108.54 SS G_CDS: -3.40 Total: -111.94 kcal Atomic # 8 Polarization: -26.39 SS G_CDS: -0.05 Total: -26.44 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 1.72 Total: 44.41 kcal Total: -61.23 3.63 -57.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268749650.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.048 kcal (2) G-P(sol) polarization free energy of solvation -61.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds