Wall clock time and date at job start Mon Mar 30 2020 19:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46880 * 2 1 4 4 C 1.50690 * 109.47193 * 239.99776 * 2 1 3 5 5 O 1.21284 * 119.99968 * 239.99496 * 4 2 1 6 6 N 1.34775 * 120.00350 * 59.99934 * 4 2 1 7 7 C 1.46506 * 120.00390 * 179.97438 * 6 4 2 8 8 C 1.53002 * 109.46949 * 174.94667 * 7 6 4 9 9 N 1.46502 * 115.54907 * 80.39625 * 8 7 6 10 10 C 1.36934 * 120.00133 * 65.27450 * 9 8 7 11 11 H 1.08004 * 120.00257 * 354.96084 * 10 9 8 12 12 C 1.38810 * 120.00195 * 174.96508 * 10 9 8 13 13 N 1.31616 * 119.99546 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00314 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.47031 * 270.00097 * 14 12 10 16 16 H 1.48502 * 109.46808 * 30.00165 * 14 12 10 17 17 H 1.48493 * 109.47194 * 149.99817 * 14 12 10 18 18 C 1.52995 * 117.49615 * 226.06313 * 8 7 6 19 19 C 1.52996 * 117.49682 * 294.71967 * 8 7 6 20 20 C 1.52995 * 109.47273 * 119.99471 * 2 1 3 21 21 C 1.53780 * 113.61642 * 279.14169 * 20 2 1 22 22 C 1.53960 * 87.02251 * 220.04592 * 21 20 2 23 23 C 1.53778 * 113.61940 * 181.53062 * 20 2 1 24 24 H 1.08999 * 109.47231 * 300.00406 * 1 2 3 25 25 H 1.08998 * 109.47059 * 60.00783 * 1 2 3 26 26 H 1.08996 * 109.46754 * 180.02562 * 1 2 3 27 27 H 0.97006 * 119.99925 * 359.97438 * 6 4 2 28 28 H 1.08996 * 109.46746 * 54.94773 * 7 6 4 29 29 H 1.08994 * 109.47061 * 294.94862 * 7 6 4 30 30 H 0.96994 * 119.99519 * 245.27432 * 9 8 7 31 31 H 0.97010 * 119.99663 * 179.97438 * 13 12 10 32 32 H 1.08997 * 117.50148 * 215.00899 * 18 8 7 33 33 H 1.09002 * 117.50010 * 0.02562 * 18 8 7 34 34 H 1.08994 * 117.50449 * 359.97438 * 19 8 7 35 35 H 1.09006 * 117.49280 * 144.97656 * 19 8 7 36 36 H 1.09003 * 112.84887 * 50.33201 * 20 2 1 37 37 H 1.09007 * 113.61562 * 334.56190 * 21 20 2 38 38 H 1.08997 * 113.61710 * 105.46746 * 21 20 2 39 39 H 1.08994 * 113.53312 * 270.81075 * 22 21 20 40 40 H 1.08995 * 113.74214 * 139.94111 * 22 21 20 41 41 H 1.08991 * 113.61888 * 254.53426 * 23 20 2 42 42 H 1.09005 * 113.61031 * 25.43679 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2303 5 8 2.7297 -1.6964 -1.1190 6 7 1.7068 -0.2501 -2.4545 7 6 2.1956 -0.9404 -3.6507 8 6 1.5844 -0.2964 -4.8967 9 7 2.2283 0.9390 -5.3499 10 6 3.5176 0.9101 -5.8103 11 1 4.0872 -0.0063 -5.7639 12 6 4.0925 2.0586 -6.3368 13 7 3.3982 3.1753 -6.3938 14 14 5.8515 2.0194 -6.9643 15 1 6.7799 2.3614 -5.8569 16 1 6.1658 0.6595 -7.4716 17 1 6.0072 3.0058 -8.0633 18 6 1.0145 -1.2296 -5.9668 19 6 0.0701 -0.4127 -5.0814 20 6 2.0400 -0.7211 1.2493 21 6 2.0344 0.1560 2.5124 22 6 3.3856 -0.4897 2.8695 23 6 3.5733 -0.7442 1.3645 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.1488 0.5384 -2.5436 28 1 1.9085 -1.9910 -3.6066 29 1 3.2818 -0.8623 -3.6969 30 1 1.7413 1.7775 -5.3237 31 1 3.8001 3.9781 -6.7614 32 1 1.1186 -0.9244 -7.0080 33 1 1.0745 -2.3023 -5.7830 34 1 -0.4907 -0.9484 -4.3156 35 1 -0.4472 0.4302 -5.5398 36 1 1.5766 -1.6971 1.3934 37 1 2.1025 1.2236 2.3030 38 1 1.2342 -0.0891 3.2106 39 1 3.2899 -1.4021 3.4580 40 1 4.1094 0.2098 3.2877 41 1 4.0137 -1.7149 1.1374 42 1 4.0629 0.0768 0.8407 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269433185.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:25:53 Heat of formation + Delta-G solvation = 5.322770 kcal Electronic energy + Delta-G solvation = -20597.486736 eV Core-core repulsion = 17578.732531 eV Total energy + Delta-G solvation = -3018.754205 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.07572 -38.32404 -37.26249 -33.82358 -33.07915 -32.62821 -29.70878 -26.65782 -25.97369 -25.35051 -23.91617 -22.77079 -21.79171 -19.76665 -19.48227 -18.97296 -17.16719 -16.80702 -15.85083 -15.49450 -15.31410 -14.78694 -14.42170 -14.22205 -13.77461 -13.29639 -13.10712 -12.90698 -12.67989 -12.41866 -12.21920 -11.98836 -11.88472 -11.64180 -11.22014 -11.00237 -10.95951 -10.88780 -10.55213 -10.35099 -10.30891 -10.25102 -10.08901 -9.71467 -9.47771 -9.23623 -8.84044 -8.54033 -7.07847 -5.84718 -3.15134 3.02097 3.40791 3.46677 3.47847 3.51829 4.40952 4.54652 4.59821 4.62766 4.69848 4.90053 5.04532 5.15828 5.23551 5.29058 5.31698 5.42483 5.48583 5.63952 5.65864 5.68270 5.74436 5.77681 5.82207 5.85528 5.93287 6.04887 6.09515 6.21968 6.26005 6.31906 6.43409 6.52672 6.57617 6.67266 6.78248 6.91981 7.68555 7.95730 8.33545 8.62920 9.44858 9.98234 10.33602 11.37253 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.018716 B = 0.004826 C = 0.004235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.666014 B = 5800.404555 C = 6610.119606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.103 4.103 3 H 0.095 0.905 4 C 0.513 3.487 5 O -0.547 6.547 6 N -0.712 5.712 7 C 0.148 3.852 8 C 0.128 3.872 9 N -0.689 5.689 10 C -0.238 4.238 11 H 0.072 0.928 12 C -0.009 4.009 13 N -0.932 5.932 14 Si 0.907 3.093 15 H -0.289 1.289 16 H -0.280 1.280 17 H -0.291 1.291 18 C -0.187 4.187 19 C -0.185 4.185 20 C -0.086 4.086 21 C -0.136 4.136 22 C -0.147 4.147 23 C -0.124 4.124 24 H 0.064 0.936 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.399 0.601 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.387 0.613 31 H 0.256 0.744 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.064 0.936 39 H 0.076 0.924 40 H 0.064 0.936 41 H 0.072 0.928 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.290 -5.794 14.472 17.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.125 4.125 3 H 0.113 0.887 4 C 0.299 3.701 5 O -0.425 6.425 6 N -0.362 5.362 7 C 0.022 3.978 8 C 0.034 3.966 9 N -0.329 5.329 10 C -0.368 4.368 11 H 0.090 0.910 12 C -0.205 4.205 13 N -0.580 5.580 14 Si 0.738 3.262 15 H -0.216 1.216 16 H -0.206 1.206 17 H -0.217 1.217 18 C -0.228 4.228 19 C -0.223 4.223 20 C -0.105 4.105 21 C -0.174 4.174 22 C -0.184 4.184 23 C -0.161 4.161 24 H 0.083 0.917 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.233 0.767 28 H 0.077 0.923 29 H 0.092 0.908 30 H 0.222 0.778 31 H 0.066 0.934 32 H 0.114 0.886 33 H 0.100 0.900 34 H 0.105 0.895 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.099 0.901 38 H 0.083 0.917 39 H 0.095 0.905 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.589 -6.501 14.445 17.156 hybrid contribution 0.549 0.794 -0.602 1.137 sum -6.040 -5.708 13.843 16.146 Atomic orbital electron populations 1.21733 0.93185 1.02469 1.02496 1.21364 0.97269 1.00638 0.93208 0.88660 1.20541 0.80299 0.84739 0.84553 1.90655 1.38166 1.26768 1.86905 1.45955 1.53018 1.31800 1.05453 1.21210 0.99785 0.94215 0.82540 1.20183 0.91010 0.91727 0.93715 1.41775 1.13178 1.02791 1.75120 1.19170 0.88895 0.96083 1.32697 0.90987 1.24746 0.98484 0.95853 1.01454 1.69660 1.36512 1.00430 1.51385 0.86184 0.84531 0.77204 0.78268 1.21647 1.20599 1.21733 1.23363 1.04770 0.96663 0.98006 1.23066 0.92699 1.03198 1.03331 1.22300 0.97017 0.98796 0.92344 1.23012 0.97637 0.99418 0.97290 1.22882 0.97496 1.00641 0.97386 1.22797 0.95855 1.02612 0.94878 0.91658 0.92037 0.92278 0.76652 0.92300 0.90843 0.77777 0.93428 0.88626 0.89980 0.89527 0.89040 0.89125 0.90138 0.91717 0.90525 0.91736 0.90968 0.90546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.07 37.16 0.34 -1.02 16 2 C -0.10 -1.23 2.46 -91.78 -0.23 -1.46 16 3 H 0.10 1.09 7.98 -51.93 -0.41 0.67 16 4 C 0.51 8.12 6.97 -10.99 -0.08 8.05 16 5 O -0.55 -10.45 14.95 5.55 0.08 -10.37 16 6 N -0.71 -11.38 5.41 -60.30 -0.33 -11.71 16 7 C 0.15 2.72 5.73 -4.04 -0.02 2.70 16 8 C 0.13 2.44 2.15 -131.82 -0.28 2.15 16 9 N -0.69 -16.42 5.49 -47.23 -0.26 -16.68 16 10 C -0.24 -6.41 9.56 -15.06 -0.14 -6.55 16 11 H 0.07 1.93 7.77 -52.48 -0.41 1.52 16 12 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 13 N -0.93 -27.35 13.06 55.49 0.72 -26.62 16 14 Si 0.91 22.24 29.55 -169.99 -5.02 17.22 16 15 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 18 C -0.19 -3.27 10.11 -26.70 -0.27 -3.54 16 19 C -0.19 -2.94 10.14 -26.70 -0.27 -3.21 16 20 C -0.09 -0.98 2.68 -89.81 -0.24 -1.23 16 21 C -0.14 -1.27 7.63 -25.83 -0.20 -1.47 16 22 C -0.15 -1.45 8.09 -25.82 -0.21 -1.66 16 23 C -0.12 -1.55 6.29 -25.92 -0.16 -1.72 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.56 7.56 -51.93 -0.39 0.17 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.40 5.83 7.90 -40.82 -0.32 5.51 16 28 H 0.06 1.04 7.94 -51.93 -0.41 0.62 16 29 H 0.07 1.57 7.73 -51.93 -0.40 1.17 16 30 H 0.39 9.78 8.04 -40.82 -0.33 9.46 16 31 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 32 H 0.10 1.81 8.14 -51.93 -0.42 1.39 16 33 H 0.08 1.28 8.08 -51.93 -0.42 0.86 16 34 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 36 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.08 0.72 7.99 -51.93 -0.41 0.30 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.07 1.01 8.00 -51.93 -0.42 0.60 16 42 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 LS Contribution 344.80 15.07 5.20 5.20 Total: -1.00 -30.20 344.80 -8.75 -38.95 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: -7.29 Total: 13.31 kcal Atomic # 6 Polarization: -7.43 SS G_CDS: -1.86 Total: -9.30 kcal Atomic # 7 Polarization: -55.15 SS G_CDS: 0.14 Total: -55.02 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.08 Total: -10.37 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.20 -8.75 -38.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269433185.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.274 kcal (2) G-P(sol) polarization free energy of solvation -30.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds