Wall clock time and date at job start Mon Mar 30 2020 19:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46880 * 2 1 4 4 C 1.50690 * 109.47193 * 239.99776 * 2 1 3 5 5 O 1.21284 * 119.99968 * 239.99496 * 4 2 1 6 6 N 1.34775 * 120.00350 * 59.99934 * 4 2 1 7 7 C 1.46506 * 120.00390 * 179.97438 * 6 4 2 8 8 C 1.53002 * 109.46949 * 174.94667 * 7 6 4 9 9 N 1.46502 * 115.54907 * 80.39625 * 8 7 6 10 10 C 1.36934 * 120.00133 * 65.27450 * 9 8 7 11 11 H 1.08004 * 120.00257 * 354.96084 * 10 9 8 12 12 C 1.38810 * 120.00195 * 174.96508 * 10 9 8 13 13 N 1.31616 * 119.99546 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00314 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.47031 * 270.00097 * 14 12 10 16 16 H 1.48502 * 109.46808 * 30.00165 * 14 12 10 17 17 H 1.48493 * 109.47194 * 149.99817 * 14 12 10 18 18 C 1.52995 * 117.49615 * 226.06313 * 8 7 6 19 19 C 1.52996 * 117.49682 * 294.71967 * 8 7 6 20 20 C 1.52995 * 109.47273 * 119.99471 * 2 1 3 21 21 C 1.53780 * 113.61642 * 279.14169 * 20 2 1 22 22 C 1.53960 * 87.02251 * 220.04592 * 21 20 2 23 23 C 1.53778 * 113.61940 * 181.53062 * 20 2 1 24 24 H 1.08999 * 109.47231 * 300.00406 * 1 2 3 25 25 H 1.08998 * 109.47059 * 60.00783 * 1 2 3 26 26 H 1.08996 * 109.46754 * 180.02562 * 1 2 3 27 27 H 0.97006 * 119.99925 * 359.97438 * 6 4 2 28 28 H 1.08996 * 109.46746 * 54.94773 * 7 6 4 29 29 H 1.08994 * 109.47061 * 294.94862 * 7 6 4 30 30 H 0.96994 * 119.99519 * 245.27432 * 9 8 7 31 31 H 0.97010 * 119.99663 * 179.97438 * 13 12 10 32 32 H 1.08997 * 117.50148 * 215.00899 * 18 8 7 33 33 H 1.09002 * 117.50010 * 0.02562 * 18 8 7 34 34 H 1.08994 * 117.50449 * 359.97438 * 19 8 7 35 35 H 1.09006 * 117.49280 * 144.97656 * 19 8 7 36 36 H 1.09003 * 112.84887 * 50.33201 * 20 2 1 37 37 H 1.09007 * 113.61562 * 334.56190 * 21 20 2 38 38 H 1.08997 * 113.61710 * 105.46746 * 21 20 2 39 39 H 1.08994 * 113.53312 * 270.81075 * 22 21 20 40 40 H 1.08995 * 113.74214 * 139.94111 * 22 21 20 41 41 H 1.08991 * 113.61888 * 254.53426 * 23 20 2 42 42 H 1.09005 * 113.61031 * 25.43679 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2303 5 8 2.7297 -1.6964 -1.1190 6 7 1.7068 -0.2501 -2.4545 7 6 2.1956 -0.9404 -3.6507 8 6 1.5844 -0.2964 -4.8967 9 7 2.2283 0.9390 -5.3499 10 6 3.5176 0.9101 -5.8103 11 1 4.0872 -0.0063 -5.7639 12 6 4.0925 2.0586 -6.3368 13 7 3.3982 3.1753 -6.3938 14 14 5.8515 2.0194 -6.9643 15 1 6.7799 2.3614 -5.8569 16 1 6.1658 0.6595 -7.4716 17 1 6.0072 3.0058 -8.0633 18 6 1.0145 -1.2296 -5.9668 19 6 0.0701 -0.4127 -5.0814 20 6 2.0400 -0.7211 1.2493 21 6 2.0344 0.1560 2.5124 22 6 3.3856 -0.4897 2.8695 23 6 3.5733 -0.7442 1.3645 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.1488 0.5384 -2.5436 28 1 1.9085 -1.9910 -3.6066 29 1 3.2818 -0.8623 -3.6969 30 1 1.7413 1.7775 -5.3237 31 1 3.8001 3.9781 -6.7614 32 1 1.1186 -0.9244 -7.0080 33 1 1.0745 -2.3023 -5.7830 34 1 -0.4907 -0.9484 -4.3156 35 1 -0.4472 0.4302 -5.5398 36 1 1.5766 -1.6971 1.3934 37 1 2.1025 1.2236 2.3030 38 1 1.2342 -0.0891 3.2106 39 1 3.2899 -1.4021 3.4580 40 1 4.1094 0.2098 3.2877 41 1 4.0137 -1.7149 1.1374 42 1 4.0629 0.0768 0.8407 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269433185.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:25:52 Heat of formation + Delta-G solvation = -13.538659 kcal Electronic energy + Delta-G solvation = -20598.304629 eV Core-core repulsion = 17578.732531 eV Total energy + Delta-G solvation = -3019.572098 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.23138 -39.52833 -38.62126 -35.31316 -34.86922 -33.65193 -31.66046 -28.03347 -26.83725 -26.19840 -25.95418 -23.87032 -23.12680 -21.06239 -20.57638 -20.23203 -19.15427 -18.09461 -17.23197 -16.85123 -16.34811 -16.17006 -15.79956 -15.58548 -15.29961 -14.98930 -14.55247 -14.04572 -13.57640 -13.50397 -13.35126 -13.24348 -13.02582 -12.94515 -12.84046 -12.53848 -12.31356 -12.22969 -12.12456 -11.98847 -11.59766 -11.40655 -11.29533 -10.98148 -10.94346 -10.84692 -10.40216 -9.95111 -9.04234 -7.97813 -5.26381 1.44767 1.45538 1.53631 1.75884 2.25491 2.51621 3.09123 3.36559 3.61953 3.65944 3.75683 3.77681 3.84606 4.02135 4.10567 4.19246 4.30594 4.34137 4.45461 4.47165 4.77357 4.81286 4.88326 4.90352 4.91351 4.94287 4.98624 5.03134 5.08178 5.12883 5.17979 5.21183 5.33574 5.38118 5.43387 5.53334 5.55540 5.65546 6.25447 6.68868 7.31625 7.36027 8.04806 8.28825 9.24581 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.018716 B = 0.004826 C = 0.004235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.666014 B = 5800.404555 C = 6610.119606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.097 4.097 3 H 0.103 0.897 4 C 0.508 3.492 5 O -0.584 6.584 6 N -0.708 5.708 7 C 0.161 3.839 8 C 0.100 3.900 9 N -0.698 5.698 10 C -0.232 4.232 11 H 0.067 0.933 12 C -0.066 4.066 13 N -0.964 5.964 14 Si 0.963 3.037 15 H -0.291 1.291 16 H -0.273 1.273 17 H -0.293 1.293 18 C -0.187 4.187 19 C -0.150 4.150 20 C -0.088 4.088 21 C -0.121 4.121 22 C -0.139 4.139 23 C -0.138 4.138 24 H 0.088 0.912 25 H 0.066 0.934 26 H 0.056 0.944 27 H 0.408 0.592 28 H 0.069 0.931 29 H 0.034 0.966 30 H 0.378 0.622 31 H 0.251 0.749 32 H 0.077 0.923 33 H 0.105 0.895 34 H 0.118 0.882 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.072 0.928 41 H 0.046 0.954 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.872 -6.112 15.895 19.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.118 4.118 3 H 0.121 0.879 4 C 0.295 3.705 5 O -0.465 6.465 6 N -0.358 5.358 7 C 0.035 3.965 8 C 0.007 3.993 9 N -0.337 5.337 10 C -0.363 4.363 11 H 0.085 0.915 12 C -0.259 4.259 13 N -0.614 5.614 14 Si 0.793 3.207 15 H -0.218 1.218 16 H -0.198 1.198 17 H -0.219 1.219 18 C -0.227 4.227 19 C -0.188 4.188 20 C -0.107 4.107 21 C -0.159 4.159 22 C -0.176 4.176 23 C -0.176 4.176 24 H 0.107 0.893 25 H 0.085 0.915 26 H 0.075 0.925 27 H 0.243 0.757 28 H 0.087 0.913 29 H 0.052 0.948 30 H 0.211 0.789 31 H 0.060 0.940 32 H 0.096 0.904 33 H 0.123 0.877 34 H 0.136 0.864 35 H 0.111 0.889 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.103 0.897 39 H 0.103 0.897 40 H 0.090 0.910 41 H 0.065 0.935 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.199 -6.851 15.881 19.141 hybrid contribution 1.033 0.794 -1.028 1.660 sum -7.166 -6.057 14.852 17.568 Atomic orbital electron populations 1.21735 0.90833 1.02824 1.03971 1.21405 0.99098 1.00237 0.91061 0.87925 1.21343 0.79382 0.84318 0.85415 1.90640 1.39769 1.28629 1.87436 1.45927 1.52962 1.31929 1.05000 1.20892 0.97380 0.94951 0.83298 1.20362 0.93503 0.90899 0.94490 1.41798 1.12400 1.04175 1.75286 1.19399 0.90210 0.95597 1.31117 0.91478 1.25403 1.01819 0.95852 1.02818 1.69781 1.37804 1.00772 1.53065 0.85294 0.80732 0.77246 0.77449 1.21832 1.19814 1.21931 1.23370 1.04826 0.97798 0.96688 1.23132 0.90483 1.02478 1.02665 1.22339 0.95751 0.99274 0.93350 1.22954 0.97668 0.99291 0.95939 1.22873 0.98196 1.01337 0.95234 1.22818 0.96794 1.00652 0.97296 0.89328 0.91458 0.92467 0.75663 0.91305 0.94788 0.78878 0.93986 0.90408 0.87713 0.86386 0.88933 0.89568 0.89364 0.89683 0.89650 0.90965 0.93504 0.92066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.07 71.98 0.65 -1.55 16 2 C -0.10 -2.15 2.46 -11.54 -0.03 -2.18 16 3 H 0.10 2.16 7.98 -2.39 -0.02 2.14 16 4 C 0.51 15.85 6.97 87.65 0.61 16.46 16 5 O -0.58 -22.69 14.95 -3.04 -0.05 -22.73 16 6 N -0.71 -22.09 5.41 -463.06 -2.50 -24.60 16 7 C 0.16 5.88 5.73 86.38 0.49 6.37 16 8 C 0.10 3.73 2.15 3.60 0.01 3.73 16 9 N -0.70 -33.48 5.49 -303.35 -1.67 -35.15 16 10 C -0.23 -12.64 9.56 84.03 0.80 -11.84 16 11 H 0.07 3.66 7.77 -2.91 -0.02 3.64 16 12 C -0.07 -3.75 5.50 84.86 0.47 -3.28 16 13 N -0.96 -57.44 13.06 21.65 0.28 -57.16 16 14 Si 0.96 46.36 29.55 68.60 2.03 48.38 16 15 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 16 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 17 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 18 C -0.19 -6.20 10.11 30.61 0.31 -5.89 16 19 C -0.15 -4.37 10.14 30.61 0.31 -4.05 16 20 C -0.09 -1.91 2.68 -10.27 -0.03 -1.93 16 21 C -0.12 -1.92 7.63 31.18 0.24 -1.68 16 22 C -0.14 -2.52 8.09 31.18 0.25 -2.27 16 23 C -0.14 -3.47 6.29 31.12 0.20 -3.28 16 24 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.07 1.02 7.56 -2.39 -0.02 1.00 16 26 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.41 11.34 7.90 -92.70 -0.73 10.61 16 28 H 0.07 2.37 7.94 -2.39 -0.02 2.35 16 29 H 0.03 1.50 7.73 -2.39 -0.02 1.48 16 30 H 0.38 19.28 8.04 -92.71 -0.75 18.53 16 31 H 0.25 14.61 8.31 -92.70 -0.77 13.84 16 32 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 33 H 0.10 3.00 8.08 -2.39 -0.02 2.98 16 34 H 0.12 2.75 8.14 -2.39 -0.02 2.73 16 35 H 0.09 2.74 8.14 -2.38 -0.02 2.72 16 36 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.09 1.29 7.99 -2.38 -0.02 1.27 16 38 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.05 1.38 8.00 -2.39 -0.02 1.36 16 42 H 0.06 1.69 8.10 -2.38 -0.02 1.67 16 Total: -1.00 -66.41 344.80 1.90 -64.50 By element: Atomic # 1 Polarization: 38.61 SS G_CDS: -0.48 Total: 38.13 kcal Atomic # 6 Polarization: -15.67 SS G_CDS: 4.29 Total: -11.39 kcal Atomic # 7 Polarization: -113.01 SS G_CDS: -3.89 Total: -116.90 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: -0.05 Total: -22.73 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.38 kcal Total: -66.41 1.90 -64.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269433185.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.966 kcal (2) G-P(sol) polarization free energy of solvation -66.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds